data_7E3D # _model_server_result.job_id Lm-LBK9icvrRAP483DxibA _model_server_result.datetime_utc '2025-01-10 16:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7E3D # _exptl.entry_id 7E3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7E3D _cell.length_a 104.931 _cell.length_b 104.931 _cell.length_c 322.566 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n C FUC 3 C 3 FUC C 3 FUC 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG 2 n D FUC 3 D 3 FUC D 3 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 69 1_555 A SG CYS 93 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 254 A CYS 257 1_555 A SG CYS 269 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 406 A CYS 409 1_555 A SG CYS 526 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 66 B CYS 69 1_555 B SG CYS 93 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 254 B CYS 257 1_555 B SG CYS 269 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 406 B CYS 409 1_555 B SG CYS 526 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 347 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 B ND2 ASN 347 B ASN 350 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale6 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C16 H34 O9' _chem_comp.formula_weight 370.436 _chem_comp.id PE8 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 PE8 sing 290 n n O1 HO1 PE8 sing 291 n n C2 C3 PE8 sing 292 n n C2 H21 PE8 sing 293 n n C2 H22 PE8 sing 294 n n C3 O4 PE8 sing 295 n n C3 H31 PE8 sing 296 n n C3 H32 PE8 sing 297 n n O4 C5 PE8 sing 298 n n C5 C6 PE8 sing 299 n n C5 H51 PE8 sing 300 n n C5 H52 PE8 sing 301 n n C6 O7 PE8 sing 302 n n C6 H61 PE8 sing 303 n n C6 H62 PE8 sing 304 n n O7 C8 PE8 sing 305 n n C8 C9 PE8 sing 306 n n C8 H81 PE8 sing 307 n n C8 H82 PE8 sing 308 n n C9 O10 PE8 sing 309 n n C9 H91 PE8 sing 310 n n C9 H92 PE8 sing 311 n n O10 C11 PE8 sing 312 n n C11 C12 PE8 sing 313 n n C11 H111 PE8 sing 314 n n C11 H112 PE8 sing 315 n n C12 O13 PE8 sing 316 n n C12 H121 PE8 sing 317 n n C12 H122 PE8 sing 318 n n O13 C14 PE8 sing 319 n n C14 C15 PE8 sing 320 n n C14 H141 PE8 sing 321 n n C14 H142 PE8 sing 322 n n C15 O16 PE8 sing 323 n n C15 H151 PE8 sing 324 n n C15 H152 PE8 sing 325 n n O16 C17 PE8 sing 326 n n C17 C18 PE8 sing 327 n n C17 H171 PE8 sing 328 n n C17 H172 PE8 sing 329 n n C18 O19 PE8 sing 330 n n C18 H181 PE8 sing 331 n n C18 H182 PE8 sing 332 n n O19 C20 PE8 sing 333 n n C20 C21 PE8 sing 334 n n C20 H201 PE8 sing 335 n n C20 H202 PE8 sing 336 n n C21 O22 PE8 sing 337 n n C21 H211 PE8 sing 338 n n C21 H212 PE8 sing 339 n n O22 C23 PE8 sing 340 n n C23 C24 PE8 sing 341 n n C23 H231 PE8 sing 342 n n C23 H232 PE8 sing 343 n n C24 O25 PE8 sing 344 n n C24 H241 PE8 sing 345 n n C24 H242 PE8 sing 346 n n O25 H25 PE8 sing 347 n n # _atom_sites.entry_id 7E3D _atom_sites.fract_transf_matrix[1][1] 0.00953 _atom_sites.fract_transf_matrix[1][2] 0.005502 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PE8 B 1 601 1 PE8 PE8 . F 4 HOH A 1 601 21 HOH HOH . F 4 HOH A 2 602 103 HOH HOH . F 4 HOH A 3 603 40 HOH HOH . F 4 HOH A 4 604 9 HOH HOH . F 4 HOH A 5 605 72 HOH HOH . F 4 HOH A 6 606 36 HOH HOH . F 4 HOH A 7 607 78 HOH HOH . F 4 HOH A 8 608 27 HOH HOH . F 4 HOH A 9 609 31 HOH HOH . F 4 HOH A 10 610 52 HOH HOH . F 4 HOH A 11 611 70 HOH HOH . F 4 HOH A 12 612 91 HOH HOH . F 4 HOH A 13 613 2 HOH HOH . F 4 HOH A 14 614 67 HOH HOH . F 4 HOH A 15 615 29 HOH HOH . F 4 HOH A 16 616 49 HOH HOH . F 4 HOH A 17 617 6 HOH HOH . F 4 HOH A 18 618 71 HOH HOH . F 4 HOH A 19 619 41 HOH HOH . F 4 HOH A 20 620 76 HOH HOH . F 4 HOH A 21 621 68 HOH HOH . F 4 HOH A 22 622 56 HOH HOH . F 4 HOH A 23 623 79 HOH HOH . F 4 HOH A 24 624 92 HOH HOH . F 4 HOH A 25 625 54 HOH HOH . F 4 HOH A 26 626 8 HOH HOH . F 4 HOH A 27 627 37 HOH HOH . F 4 HOH A 28 628 48 HOH HOH . F 4 HOH A 29 629 15 HOH HOH . F 4 HOH A 30 630 16 HOH HOH . F 4 HOH A 31 631 51 HOH HOH . F 4 HOH A 32 632 38 HOH HOH . F 4 HOH A 33 633 59 HOH HOH . F 4 HOH A 34 634 47 HOH HOH . F 4 HOH A 35 635 30 HOH HOH . F 4 HOH A 36 636 33 HOH HOH . F 4 HOH A 37 637 64 HOH HOH . F 4 HOH A 38 638 34 HOH HOH . F 4 HOH A 39 639 83 HOH HOH . F 4 HOH A 40 640 4 HOH HOH . F 4 HOH A 41 641 39 HOH HOH . F 4 HOH A 42 642 19 HOH HOH . F 4 HOH A 43 643 11 HOH HOH . F 4 HOH A 44 644 53 HOH HOH . F 4 HOH A 45 645 60 HOH HOH . F 4 HOH A 46 646 10 HOH HOH . F 4 HOH A 47 647 32 HOH HOH . F 4 HOH A 48 648 63 HOH HOH . F 4 HOH A 49 649 65 HOH HOH . F 4 HOH A 50 650 87 HOH HOH . F 4 HOH A 51 651 25 HOH HOH . F 4 HOH A 52 652 80 HOH HOH . F 4 HOH A 53 653 35 HOH HOH . F 4 HOH A 54 654 5 HOH HOH . F 4 HOH A 55 655 104 HOH HOH . F 4 HOH A 56 656 107 HOH HOH . G 4 HOH B 1 701 62 HOH HOH . G 4 HOH B 2 702 90 HOH HOH . G 4 HOH B 3 703 93 HOH HOH . G 4 HOH B 4 704 26 HOH HOH . G 4 HOH B 5 705 46 HOH HOH . G 4 HOH B 6 706 61 HOH HOH . G 4 HOH B 7 707 18 HOH HOH . G 4 HOH B 8 708 17 HOH HOH . G 4 HOH B 9 709 75 HOH HOH . G 4 HOH B 10 710 3 HOH HOH . G 4 HOH B 11 711 74 HOH HOH . G 4 HOH B 12 712 28 HOH HOH . G 4 HOH B 13 713 108 HOH HOH . G 4 HOH B 14 714 102 HOH HOH . G 4 HOH B 15 715 43 HOH HOH . G 4 HOH B 16 716 42 HOH HOH . G 4 HOH B 17 717 23 HOH HOH . G 4 HOH B 18 718 73 HOH HOH . G 4 HOH B 19 719 12 HOH HOH . G 4 HOH B 20 720 45 HOH HOH . G 4 HOH B 21 721 86 HOH HOH . G 4 HOH B 22 722 82 HOH HOH . G 4 HOH B 23 723 20 HOH HOH . G 4 HOH B 24 724 57 HOH HOH . G 4 HOH B 25 725 55 HOH HOH . G 4 HOH B 26 726 50 HOH HOH . G 4 HOH B 27 727 22 HOH HOH . G 4 HOH B 28 728 89 HOH HOH . G 4 HOH B 29 729 44 HOH HOH . G 4 HOH B 30 730 96 HOH HOH . G 4 HOH B 31 731 24 HOH HOH . G 4 HOH B 32 732 1 HOH HOH . G 4 HOH B 33 733 58 HOH HOH . G 4 HOH B 34 734 85 HOH HOH . G 4 HOH B 35 735 77 HOH HOH . G 4 HOH B 36 736 105 HOH HOH . G 4 HOH B 37 737 99 HOH HOH . G 4 HOH B 38 738 97 HOH HOH . G 4 HOH B 39 739 81 HOH HOH . G 4 HOH B 40 740 98 HOH HOH . G 4 HOH B 41 741 84 HOH HOH . G 4 HOH B 42 742 100 HOH HOH . G 4 HOH B 43 743 13 HOH HOH . G 4 HOH B 44 744 14 HOH HOH . G 4 HOH B 45 745 88 HOH HOH . G 4 HOH B 46 746 69 HOH HOH . G 4 HOH B 47 747 101 HOH HOH . G 4 HOH B 48 748 94 HOH HOH . G 4 HOH B 49 749 7 HOH HOH . G 4 HOH B 50 750 95 HOH HOH . G 4 HOH B 51 751 66 HOH HOH . G 4 HOH B 52 752 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE8 . . . E 3 23.527 127.863 21.799 1 59.36 ? O1 PE8 601 B 1 HETATM 2 C C2 PE8 . . . E 3 23.991 126.594 22.198 1 49.81 ? C2 PE8 601 B 1 HETATM 3 C C3 PE8 . . . E 3 22.841 125.583 22.217 1 43.67 ? C3 PE8 601 B 1 HETATM 4 O O4 PE8 . . . E 3 22.242 125.518 20.954 1 49.22 ? O4 PE8 601 B 1 HETATM 5 C C5 PE8 . . . E 3 20.847 125.415 20.967 1 49.51 ? C5 PE8 601 B 1 HETATM 6 C C6 PE8 . . . E 3 20.286 125.672 19.57 1 41.2 ? C6 PE8 601 B 1 HETATM 7 O O7 PE8 . . . E 3 19.345 126.717 19.595 1 44.29 ? O7 PE8 601 B 1 HETATM 8 C C8 PE8 . . . E 3 19.204 127.36 18.354 1 33.12 ? C8 PE8 601 B 1 HETATM 9 C C9 PE8 . . . E 3 18.86 128.852 18.434 1 42 ? C9 PE8 601 B 1 HETATM 10 O O10 PE8 . . . E 3 19.456 129.497 19.523 1 55.45 ? O10 PE8 601 B 1 HETATM 11 C C11 PE8 . . . E 3 19.342 130.889 19.462 1 43.49 ? C11 PE8 601 B 1 HETATM 12 C C12 PE8 . . . E 3 19.266 131.443 20.886 1 48.09 ? C12 PE8 601 B 1 HETATM 13 O O13 PE8 . . . E 3 20.309 130.946 21.684 1 54.3 ? O13 PE8 601 B 1 HETATM 14 C C14 PE8 . . . E 3 20.512 131.748 22.818 1 54.32 ? C14 PE8 601 B 1 HETATM 15 C C15 PE8 . . . E 3 21.736 131.273 23.591 1 56.73 ? C15 PE8 601 B 1 HETATM 16 O O16 PE8 . . . E 3 21.668 129.891 23.801 1 63.94 ? O16 PE8 601 B 1 HETATM 17 C C17 PE8 . . . E 3 22.253 129.52 25.015 1 47.75 ? C17 PE8 601 B 1 HETATM 18 C C18 PE8 . . . E 3 22.024 128.037 25.288 1 41.26 ? C18 PE8 601 B 1 HETATM 19 O O19 PE8 . . . E 3 21.087 127.956 26.318 1 55.36 ? O19 PE8 601 B 1 HETATM 20 C C20 PE8 . . . E 3 21.086 126.746 27.024 1 52.44 ? C20 PE8 601 B 1 HETATM 21 C C21 PE8 . . . E 3 20.08 126.851 28.161 1 46.03 ? C21 PE8 601 B 1 HETATM 22 O O22 PE8 . . . E 3 20.217 128.104 28.784 1 55.33 ? O22 PE8 601 B 1 HETATM 23 C C23 PE8 . . . E 3 20.265 128.029 30.187 1 52.01 ? C23 PE8 601 B 1 HETATM 24 C C24 PE8 . . . E 3 20.523 129.415 30.78 1 54.14 ? C24 PE8 601 B 1 HETATM 25 O O25 PE8 . . . E 3 21.532 129.321 31.747 1 57.29 ? O25 PE8 601 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #