data_7E3H # _model_server_result.job_id Htt2UYgYGjiY8ItPTvBXcw _model_server_result.datetime_utc '2024-11-15 04:34:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7E3H # _exptl.entry_id 7E3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.492 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-BENZYL-4-[(5,6-DIMETHOXY-1-INDANON-2-YL)METHYL]PIPERIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7E3H _cell.length_a 105.105 _cell.length_b 105.105 _cell.length_c 322.15 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n C FUC 3 C 3 FUC C 3 FUC 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG 2 n D FUC 3 D 3 FUC D 3 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 69 1_555 A SG CYS 93 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 254 A CYS 257 1_555 A SG CYS 269 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf3 A SG CYS 406 A CYS 409 1_555 A SG CYS 526 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 66 B CYS 69 1_555 B SG CYS 93 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf5 B SG CYS 254 B CYS 257 1_555 B SG CYS 269 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf6 B SG CYS 406 B CYS 409 1_555 B SG CYS 526 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 347 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 B ND2 ASN 347 B ASN 350 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale6 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C24 H29 N O3' _chem_comp.formula_weight 379.492 _chem_comp.id E20 _chem_comp.mon_nstd_flag . _chem_comp.name 1-BENZYL-4-[(5,6-DIMETHOXY-1-INDANON-2-YL)METHYL]PIPERIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms E2020 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 E20 doub 83 n y C1 C6 E20 sing 84 n y C1 O25 E20 sing 85 n n C2 C3 E20 sing 86 n y C2 O27 E20 sing 87 n n C3 C4 E20 doub 88 n y C3 H3 E20 sing 89 n n C4 C5 E20 sing 90 n y C4 C9 E20 sing 91 n n C5 C6 E20 doub 92 n y C5 C7 E20 sing 93 n n C6 H6 E20 sing 94 n n C7 C8 E20 sing 95 n n C7 O24 E20 doub 96 n n C8 C9 E20 sing 97 n n C8 C10 E20 sing 98 n n C8 H8 E20 sing 99 n n C9 H91 E20 sing 100 n n C9 H92 E20 sing 101 n n C10 C11 E20 sing 102 n n C10 H101 E20 sing 103 n n C10 H102 E20 sing 104 n n C11 C12 E20 sing 105 n n C11 C16 E20 sing 106 n n C11 H11 E20 sing 107 n n C12 C13 E20 sing 108 n n C12 H121 E20 sing 109 n n C12 H122 E20 sing 110 n n C13 N14 E20 sing 111 n n C13 H131 E20 sing 112 n n C13 H132 E20 sing 113 n n N14 C15 E20 sing 114 n n N14 C17 E20 sing 115 n n C15 C16 E20 sing 116 n n C15 H151 E20 sing 117 n n C15 H152 E20 sing 118 n n C16 H161 E20 sing 119 n n C16 H162 E20 sing 120 n n C17 C18 E20 sing 121 n n C17 H171 E20 sing 122 n n C17 H172 E20 sing 123 n n C18 C19 E20 doub 124 n y C18 C23 E20 sing 125 n y C19 C20 E20 sing 126 n y C19 H19 E20 sing 127 n n C20 C21 E20 doub 128 n y C20 H20 E20 sing 129 n n C21 C22 E20 sing 130 n y C21 H21 E20 sing 131 n n C22 C23 E20 doub 132 n y C22 H22 E20 sing 133 n n C23 H23 E20 sing 134 n n O25 C26 E20 sing 135 n n C26 H261 E20 sing 136 n n C26 H262 E20 sing 137 n n C26 H263 E20 sing 138 n n O27 C28 E20 sing 139 n n C28 H281 E20 sing 140 n n C28 H282 E20 sing 141 n n C28 H283 E20 sing 142 n n # _atom_sites.entry_id 7E3H _atom_sites.fract_transf_matrix[1][1] 0.009514 _atom_sites.fract_transf_matrix[1][2] 0.005493 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 E20 A 1 601 2 E20 E20 . F 3 E20 B 1 601 3 E20 E20 . G 4 HOH A 1 701 14 HOH HOH . G 4 HOH A 2 702 48 HOH HOH . G 4 HOH A 3 703 44 HOH HOH . G 4 HOH A 4 704 26 HOH HOH . G 4 HOH A 5 705 54 HOH HOH . G 4 HOH A 6 706 40 HOH HOH . G 4 HOH A 7 707 22 HOH HOH . G 4 HOH A 8 708 42 HOH HOH . G 4 HOH A 9 709 23 HOH HOH . G 4 HOH A 10 710 49 HOH HOH . G 4 HOH A 11 711 17 HOH HOH . G 4 HOH A 12 712 3 HOH HOH . G 4 HOH A 13 713 57 HOH HOH . G 4 HOH A 14 714 37 HOH HOH . G 4 HOH A 15 715 27 HOH HOH . G 4 HOH A 16 716 50 HOH HOH . G 4 HOH A 17 717 53 HOH HOH . G 4 HOH A 18 718 58 HOH HOH . G 4 HOH A 19 719 31 HOH HOH . G 4 HOH A 20 720 51 HOH HOH . G 4 HOH A 21 721 8 HOH HOH . G 4 HOH A 22 722 32 HOH HOH . G 4 HOH A 23 723 56 HOH HOH . G 4 HOH A 24 724 47 HOH HOH . G 4 HOH A 25 725 2 HOH HOH . H 4 HOH B 1 701 34 HOH HOH . H 4 HOH B 2 702 19 HOH HOH . H 4 HOH B 3 703 59 HOH HOH . H 4 HOH B 4 704 33 HOH HOH . H 4 HOH B 5 705 18 HOH HOH . H 4 HOH B 6 706 52 HOH HOH . H 4 HOH B 7 707 35 HOH HOH . H 4 HOH B 8 708 55 HOH HOH . H 4 HOH B 9 709 15 HOH HOH . H 4 HOH B 10 710 30 HOH HOH . H 4 HOH B 11 711 20 HOH HOH . H 4 HOH B 12 712 41 HOH HOH . H 4 HOH B 13 713 6 HOH HOH . H 4 HOH B 14 714 38 HOH HOH . H 4 HOH B 15 715 28 HOH HOH . H 4 HOH B 16 716 5 HOH HOH . H 4 HOH B 17 717 9 HOH HOH . H 4 HOH B 18 718 29 HOH HOH . H 4 HOH B 19 719 46 HOH HOH . H 4 HOH B 20 720 21 HOH HOH . H 4 HOH B 21 721 7 HOH HOH . H 4 HOH B 22 722 10 HOH HOH . H 4 HOH B 23 723 13 HOH HOH . H 4 HOH B 24 724 1 HOH HOH . H 4 HOH B 25 725 36 HOH HOH . H 4 HOH B 26 726 11 HOH HOH . H 4 HOH B 27 727 24 HOH HOH . H 4 HOH B 28 728 43 HOH HOH . H 4 HOH B 29 729 12 HOH HOH . H 4 HOH B 30 730 16 HOH HOH . H 4 HOH B 31 731 45 HOH HOH . H 4 HOH B 32 732 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E20 . . . F 3 -45.471 4.84 -77.832 1 42 ? C1 E20 601 B 1 HETATM 2 C C2 E20 . . . F 3 -45.51 4.383 -79.155 1 41.84 ? C2 E20 601 B 1 HETATM 3 C C3 E20 . . . F 3 -45.326 5.283 -80.197 1 40.14 ? C3 E20 601 B 1 HETATM 4 C C4 E20 . . . F 3 -45.102 6.637 -79.939 1 35.32 ? C4 E20 601 B 1 HETATM 5 C C5 E20 . . . F 3 -45.069 7.114 -78.616 1 37.42 ? C5 E20 601 B 1 HETATM 6 C C6 E20 . . . F 3 -45.252 6.203 -77.557 1 42.19 ? C6 E20 601 B 1 HETATM 7 C C7 E20 . . . F 3 -44.801 8.577 -78.62 1 38.58 ? C7 E20 601 B 1 HETATM 8 C C8 E20 . . . F 3 -44.695 9.012 -80.031 1 38.3 ? C8 E20 601 B 1 HETATM 9 C C9 E20 . . . F 3 -44.877 7.81 -80.894 1 31.16 ? C9 E20 601 B 1 HETATM 10 C C10 E20 . . . F 3 -45.697 10.123 -80.326 1 37.35 ? C10 E20 601 B 1 HETATM 11 C C11 E20 . . . F 3 -45.183 11.037 -81.456 1 36.74 ? C11 E20 601 B 1 HETATM 12 C C12 E20 . . . F 3 -45.369 10.385 -82.815 1 35.2 ? C12 E20 601 B 1 HETATM 13 C C13 E20 . . . F 3 -44.959 11.343 -83.945 1 31.89 ? C13 E20 601 B 1 HETATM 14 N N14 E20 . . . F 3 -45.733 12.587 -83.92 1 37.59 ? N14 E20 601 B 1 HETATM 15 C C15 E20 . . . F 3 -45.649 13.182 -82.581 1 42.06 ? C15 E20 601 B 1 HETATM 16 C C16 E20 . . . F 3 -46.03 12.231 -81.454 1 40.5 ? C16 E20 601 B 1 HETATM 17 C C17 E20 . . . F 3 -45.63 13.475 -85.115 1 45.94 ? C17 E20 601 B 1 HETATM 18 C C18 E20 . . . F 3 -44.278 14.174 -85.251 1 39.41 ? C18 E20 601 B 1 HETATM 19 C C19 E20 . . . F 3 -44.141 15.496 -84.836 1 38.85 ? C19 E20 601 B 1 HETATM 20 C C20 E20 . . . F 3 -42.914 16.141 -84.968 1 37.42 ? C20 E20 601 B 1 HETATM 21 C C21 E20 . . . F 3 -41.81 15.462 -85.528 1 37.46 ? C21 E20 601 B 1 HETATM 22 C C22 E20 . . . F 3 -41.943 14.149 -85.945 1 36.75 ? C22 E20 601 B 1 HETATM 23 C C23 E20 . . . F 3 -43.181 13.506 -85.807 1 35.49 ? C23 E20 601 B 1 HETATM 24 O O24 E20 . . . F 3 -44.648 9.276 -77.633 1 34.34 ? O24 E20 601 B 1 HETATM 25 O O25 E20 . . . F 3 -45.668 3.941 -76.802 1 46.58 ? O25 E20 601 B 1 HETATM 26 C C26 E20 . . . F 3 -45.008 4.107 -75.587 1 37.11 ? C26 E20 601 B 1 HETATM 27 O O27 E20 . . . F 3 -45.717 3.024 -79.447 1 46.3 ? O27 E20 601 B 1 HETATM 28 C C28 E20 . . . F 3 -46.13 2.676 -80.737 1 33.12 ? C28 E20 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #