data_7E3M
#
_model_server_result.job_id            Z-OxCwVu75liw27SnCG6OQ 
_model_server_result.datetime_utc      '2024-11-14 13:20:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7E3M 
#
_exptl.entry_id    7E3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.731 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R,5R,6S,8R,9R,10R,12R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-[(2R)-2,6,6-trimethyloxan-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6,12-triol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7E3M 
_cell.length_a            62.446 
_cell.length_b            62.446 
_cell.length_c            159.766 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H52 O4' 
_chem_comp.formula_weight    476.731 
_chem_comp.id                HVL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R,5R,6S,8R,9R,10R,12R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-[(2R)-2,6,6-trimethyloxan-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6,12-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C7 HVL sing 152 n n 
C6 C5 HVL sing 153 n n 
O11 C5 HVL sing 154 n n 
C50 C42 HVL sing 155 n n 
C47 C33 HVL sing 156 n n 
C7 C8 HVL sing 157 n n 
C3 C4 HVL sing 158 n n 
C5 C4 HVL sing 159 n n 
C38 C39 HVL sing 160 n n 
C38 O51 HVL sing 161 n n 
C38 C34 HVL sing 162 n n 
C39 C25 HVL sing 163 n n 
C43 C42 HVL sing 164 n n 
C43 C44 HVL sing 165 n n 
C42 O41 HVL sing 166 n n 
C42 C49 HVL sing 167 n n 
C25 C8 HVL sing 168 n n 
C25 C24 HVL sing 169 n n 
O41 C40 HVL sing 170 n n 
C4 C9 HVL sing 171 n n 
C4 C10 HVL sing 172 n n 
C9 C8 HVL sing 173 n n 
C9 C22 HVL sing 174 n n 
C8 C27 HVL sing 175 n n 
C35 C34 HVL sing 176 n n 
C35 C40 HVL sing 177 n n 
C35 C36 HVL sing 178 n n 
C33 C34 HVL sing 179 n n 
C33 C24 HVL sing 180 n n 
C33 C37 HVL sing 181 n n 
C45 C44 HVL sing 182 n n 
C45 C40 HVL sing 183 n n 
C40 C46 HVL sing 184 n n 
C24 C23 HVL sing 185 n n 
C24 C48 HVL sing 186 n n 
C36 C37 HVL sing 187 n n 
C23 C22 HVL sing 188 n n 
O2 C22 HVL sing 189 n n 
C3 H1 HVL sing 190 n n 
C3 H2 HVL sing 191 n n 
C3 H3 HVL sing 192 n n 
C5 H4 HVL sing 193 n n 
C6 H5 HVL sing 194 n n 
C6 H6 HVL sing 195 n n 
C7 H7 HVL sing 196 n n 
C7 H8 HVL sing 197 n n 
C9 H9 HVL sing 198 n n 
C10 H10 HVL sing 199 n n 
C10 H11 HVL sing 200 n n 
C10 H12 HVL sing 201 n n 
O11 H13 HVL sing 202 n n 
C22 H14 HVL sing 203 n n 
C23 H15 HVL sing 204 n n 
C23 H16 HVL sing 205 n n 
C25 H17 HVL sing 206 n n 
C27 H18 HVL sing 207 n n 
C27 H19 HVL sing 208 n n 
C27 H20 HVL sing 209 n n 
C34 H21 HVL sing 210 n n 
C35 H22 HVL sing 211 n n 
C36 H23 HVL sing 212 n n 
C36 H24 HVL sing 213 n n 
C37 H25 HVL sing 214 n n 
C37 H26 HVL sing 215 n n 
C38 H27 HVL sing 216 n n 
C39 H28 HVL sing 217 n n 
C39 H29 HVL sing 218 n n 
C43 H30 HVL sing 219 n n 
C43 H31 HVL sing 220 n n 
C44 H32 HVL sing 221 n n 
C44 H33 HVL sing 222 n n 
C45 H34 HVL sing 223 n n 
C45 H35 HVL sing 224 n n 
C46 H36 HVL sing 225 n n 
C46 H37 HVL sing 226 n n 
C46 H38 HVL sing 227 n n 
C47 H39 HVL sing 228 n n 
C47 H40 HVL sing 229 n n 
C47 H41 HVL sing 230 n n 
C48 H42 HVL sing 231 n n 
C48 H43 HVL sing 232 n n 
C48 H44 HVL sing 233 n n 
C49 H45 HVL sing 234 n n 
C49 H46 HVL sing 235 n n 
C49 H47 HVL sing 236 n n 
C50 H48 HVL sing 237 n n 
C50 H49 HVL sing 238 n n 
C50 H50 HVL sing 239 n n 
O51 H51 HVL sing 240 n n 
O2 H52 HVL sing 241 n n 
#
_atom_sites.entry_id                     7E3M 
_atom_sites.fract_transf_matrix[1][1]    0.016014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HVL A 1 601 1 HVL lzh . 
D 4 HOH A 1 701 25 HOH HOH . 
D 4 HOH A 2 702 16 HOH HOH . 
D 4 HOH A 3 703 27 HOH HOH . 
D 4 HOH A 4 704 10 HOH HOH . 
D 4 HOH A 5 705 13 HOH HOH . 
D 4 HOH A 6 706 21 HOH HOH . 
D 4 HOH A 7 707 29 HOH HOH . 
D 4 HOH A 8 708 6 HOH HOH . 
D 4 HOH A 9 709 22 HOH HOH . 
D 4 HOH A 10 710 23 HOH HOH . 
D 4 HOH A 11 711 24 HOH HOH . 
D 4 HOH A 12 712 12 HOH HOH . 
D 4 HOH A 13 713 14 HOH HOH . 
D 4 HOH A 14 714 4 HOH HOH . 
D 4 HOH A 15 715 7 HOH HOH . 
D 4 HOH A 16 716 18 HOH HOH . 
D 4 HOH A 17 717 1 HOH HOH . 
D 4 HOH A 18 718 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 HVL . . . C 3 -28.178 -0.718 -25.753 1 45.69 ? C3 HVL 601 A 1 
HETATM 2 C C4 HVL . . . C 3 -27.009 -1.354 -24.991 1 45.21 ? C4 HVL 601 A 1 
HETATM 3 C C5 HVL . . . C 3 -25.659 -0.937 -25.636 1 46.61 ? C5 HVL 601 A 1 
HETATM 4 C C6 HVL . . . C 3 -25.199 -1.976 -26.638 1 46.27 ? C6 HVL 601 A 1 
HETATM 5 C C7 HVL . . . C 3 -24.904 -3.31 -25.954 1 44.4 ? C7 HVL 601 A 1 
HETATM 6 C C8 HVL . . . C 3 -25.901 -3.708 -24.862 1 42.71 ? C8 HVL 601 A 1 
HETATM 7 C C9 HVL . . . C 3 -27.218 -2.896 -24.983 1 42.51 ? C9 HVL 601 A 1 
HETATM 8 C C10 HVL . . . C 3 -27.005 -0.735 -23.583 1 44.25 ? C10 HVL 601 A 1 
HETATM 9 O O11 HVL . . . C 3 -25.675 0.334 -26.322 1 46.04 ? O11 HVL 601 A 1 
HETATM 10 C C22 HVL . . . C 3 -28.264 -3.377 -23.956 1 41.25 ? C22 HVL 601 A 1 
HETATM 11 C C23 HVL . . . C 3 -28.604 -4.864 -24.084 1 36.94 ? C23 HVL 601 A 1 
HETATM 12 C C24 HVL . . . C 3 -27.367 -5.753 -24.118 1 38.05 ? C24 HVL 601 A 1 
HETATM 13 C C25 HVL . . . C 3 -26.267 -5.202 -25.064 1 40.61 ? C25 HVL 601 A 1 
HETATM 14 C C27 HVL . . . C 3 -25.142 -3.465 -23.55 1 42.44 ? C27 HVL 601 A 1 
HETATM 15 C C33 HVL . . . C 3 -27.701 -7.157 -24.657 1 37.33 ? C33 HVL 601 A 1 
HETATM 16 C C34 HVL . . . C 3 -26.504 -8.073 -24.464 1 37.23 ? C34 HVL 601 A 1 
HETATM 17 C C35 HVL . . . C 3 -27.081 -9.472 -24.693 1 37.23 ? C35 HVL 601 A 1 
HETATM 18 C C36 HVL . . . C 3 -28.493 -9.384 -24.091 1 37.5 ? C36 HVL 601 A 1 
HETATM 19 C C37 HVL . . . C 3 -28.833 -7.901 -23.955 1 35.85 ? C37 HVL 601 A 1 
HETATM 20 C C38 HVL . . . C 3 -25.315 -7.638 -25.311 1 39.87 ? C38 HVL 601 A 1 
HETATM 21 C C39 HVL . . . C 3 -25.032 -6.139 -25.12 1 41.04 ? C39 HVL 601 A 1 
HETATM 22 C C40 HVL . . . C 3 -26.234 -10.641 -24.18 1 35.66 ? C40 HVL 601 A 1 
HETATM 23 O O41 HVL . . . C 3 -25.054 -10.708 -25.013 1 37.38 ? O41 HVL 601 A 1 
HETATM 24 C C42 HVL . . . C 3 -24.104 -11.783 -25.065 1 36.86 ? C42 HVL 601 A 1 
HETATM 25 C C43 HVL . . . C 3 -24.802 -13.132 -25.084 1 36.81 ? C43 HVL 601 A 1 
HETATM 26 C C44 HVL . . . C 3 -26.064 -13.154 -24.214 1 36.43 ? C44 HVL 601 A 1 
HETATM 27 C C45 HVL . . . C 3 -26.985 -11.934 -24.381 1 34.62 ? C45 HVL 601 A 1 
HETATM 28 C C46 HVL . . . C 3 -25.894 -10.445 -22.698 1 34.56 ? C46 HVL 601 A 1 
HETATM 29 C C47 HVL . . . C 3 -28.081 -7.148 -26.155 1 36.94 ? C47 HVL 601 A 1 
HETATM 30 C C48 HVL . . . C 3 -26.865 -5.851 -22.667 1 37.6 ? C48 HVL 601 A 1 
HETATM 31 C C49 HVL . . . C 3 -23.255 -11.606 -23.824 1 38 ? C49 HVL 601 A 1 
HETATM 32 C C50 HVL . . . C 3 -23.191 -11.716 -26.292 1 35.87 ? C50 HVL 601 A 1 
HETATM 33 O O51 HVL . . . C 3 -24.13 -8.367 -24.937 1 42.09 ? O51 HVL 601 A 1 
HETATM 34 O O2 HVL . . . C 3 -29.476 -2.607 -24.032 1 41.41 ? O2 HVL 601 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#