data_7E3N # _model_server_result.job_id 388PXzWahcmeIhC9Ye2dhQ _model_server_result.datetime_utc '2024-12-12 20:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7E3N # _exptl.entry_id 7E3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.04 _cell.angle_gamma 90 _cell.entry_id 7E3N _cell.length_a 105.267 _cell.length_b 89.767 _cell.length_c 62.031 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -73.281561 0 -53.148628 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 251 A ASP 251 1_555 C CA CA . A CA 502 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 A OD1 ASP 274 A ASP 274 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 C CA CA . A CA 502 1_555 D O7 ICT . A ICT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc4 C CA CA . A CA 502 1_555 D O3 ICT . A ICT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc5 C CA CA . A CA 502 1_555 E O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 C CA CA . A CA 502 1_555 E O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 C CA CA . A CA 502 1_555 E O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 257 n n PA O2A NAP sing 258 n n PA O5B NAP sing 259 n n PA O3 NAP sing 260 n n O2A HOA2 NAP sing 261 n n O5B C5B NAP sing 262 n n C5B C4B NAP sing 263 n n C5B H51A NAP sing 264 n n C5B H52A NAP sing 265 n n C4B O4B NAP sing 266 n n C4B C3B NAP sing 267 n n C4B H4B NAP sing 268 n n O4B C1B NAP sing 269 n n C3B O3B NAP sing 270 n n C3B C2B NAP sing 271 n n C3B H3B NAP sing 272 n n O3B HO3A NAP sing 273 n n C2B O2B NAP sing 274 n n C2B C1B NAP sing 275 n n C2B H2B NAP sing 276 n n O2B P2B NAP sing 277 n n C1B N9A NAP sing 278 n n C1B H1B NAP sing 279 n n N9A C8A NAP sing 280 n y N9A C4A NAP sing 281 n y C8A N7A NAP doub 282 n y C8A H8A NAP sing 283 n n N7A C5A NAP sing 284 n y C5A C6A NAP sing 285 n y C5A C4A NAP doub 286 n y C6A N6A NAP sing 287 n n C6A N1A NAP doub 288 n y N6A H61A NAP sing 289 n n N6A H62A NAP sing 290 n n N1A C2A NAP sing 291 n y C2A N3A NAP doub 292 n y C2A H2A NAP sing 293 n n N3A C4A NAP sing 294 n y O3 PN NAP sing 295 n n PN O1N NAP doub 296 n n PN O2N NAP sing 297 n n PN O5D NAP sing 298 n n O5D C5D NAP sing 299 n n C5D C4D NAP sing 300 n n C5D H51N NAP sing 301 n n C5D H52N NAP sing 302 n n C4D O4D NAP sing 303 n n C4D C3D NAP sing 304 n n C4D H4D NAP sing 305 n n O4D C1D NAP sing 306 n n C3D O3D NAP sing 307 n n C3D C2D NAP sing 308 n n C3D H3D NAP sing 309 n n O3D HO3N NAP sing 310 n n C2D O2D NAP sing 311 n n C2D C1D NAP sing 312 n n C2D H2D NAP sing 313 n n O2D HO2N NAP sing 314 n n C1D N1N NAP sing 315 n n C1D H1D NAP sing 316 n n N1N C2N NAP sing 317 n y N1N C6N NAP doub 318 n y C2N C3N NAP doub 319 n y C2N H2N NAP sing 320 n n C3N C7N NAP sing 321 n n C3N C4N NAP sing 322 n y C7N O7N NAP doub 323 n n C7N N7N NAP sing 324 n n N7N H71N NAP sing 325 n n N7N H72N NAP sing 326 n n C4N C5N NAP doub 327 n y C4N H4N NAP sing 328 n n C5N C6N NAP sing 329 n y C5N H5N NAP sing 330 n n C6N H6N NAP sing 331 n n P2B O1X NAP doub 332 n n P2B O2X NAP sing 333 n n P2B O3X NAP sing 334 n n O2X HOP2 NAP sing 335 n n O3X HOP3 NAP sing 336 n n # _atom_sites.entry_id 7E3N _atom_sites.fract_transf_matrix[1][1] 0.0095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 501 415 NAP NAP . C 3 CA A 1 502 501 CA CA . D 4 ICT A 1 503 601 ICT ICT . E 5 HOH A 1 601 30 HOH HOH . E 5 HOH A 2 602 84 HOH HOH . E 5 HOH A 3 603 53 HOH HOH . E 5 HOH A 4 604 26 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 57 HOH HOH . E 5 HOH A 7 607 46 HOH HOH . E 5 HOH A 8 608 23 HOH HOH . E 5 HOH A 9 609 39 HOH HOH . E 5 HOH A 10 610 43 HOH HOH . E 5 HOH A 11 611 34 HOH HOH . E 5 HOH A 12 612 85 HOH HOH . E 5 HOH A 13 613 12 HOH HOH . E 5 HOH A 14 614 73 HOH HOH . E 5 HOH A 15 615 2 HOH HOH . E 5 HOH A 16 616 67 HOH HOH . E 5 HOH A 17 617 50 HOH HOH . E 5 HOH A 18 618 65 HOH HOH . E 5 HOH A 19 619 27 HOH HOH . E 5 HOH A 20 620 21 HOH HOH . E 5 HOH A 21 621 14 HOH HOH . E 5 HOH A 22 622 8 HOH HOH . E 5 HOH A 23 623 64 HOH HOH . E 5 HOH A 24 624 7 HOH HOH . E 5 HOH A 25 625 31 HOH HOH . E 5 HOH A 26 626 47 HOH HOH . E 5 HOH A 27 627 25 HOH HOH . E 5 HOH A 28 628 29 HOH HOH . E 5 HOH A 29 629 1 HOH HOH . E 5 HOH A 30 630 24 HOH HOH . E 5 HOH A 31 631 11 HOH HOH . E 5 HOH A 32 632 58 HOH HOH . E 5 HOH A 33 633 9 HOH HOH . E 5 HOH A 34 634 52 HOH HOH . E 5 HOH A 35 635 80 HOH HOH . E 5 HOH A 36 636 72 HOH HOH . E 5 HOH A 37 637 87 HOH HOH . E 5 HOH A 38 638 56 HOH HOH . E 5 HOH A 39 639 49 HOH HOH . E 5 HOH A 40 640 19 HOH HOH . E 5 HOH A 41 641 51 HOH HOH . E 5 HOH A 42 642 3 HOH HOH . E 5 HOH A 43 643 48 HOH HOH . E 5 HOH A 44 644 16 HOH HOH . E 5 HOH A 45 645 69 HOH HOH . E 5 HOH A 46 646 40 HOH HOH . E 5 HOH A 47 647 77 HOH HOH . E 5 HOH A 48 648 44 HOH HOH . E 5 HOH A 49 649 22 HOH HOH . E 5 HOH A 50 650 36 HOH HOH . E 5 HOH A 51 651 59 HOH HOH . E 5 HOH A 52 652 54 HOH HOH . E 5 HOH A 53 653 82 HOH HOH . E 5 HOH A 54 654 79 HOH HOH . E 5 HOH A 55 655 33 HOH HOH . E 5 HOH A 56 656 17 HOH HOH . E 5 HOH A 57 657 62 HOH HOH . E 5 HOH A 58 658 75 HOH HOH . E 5 HOH A 59 659 18 HOH HOH . E 5 HOH A 60 660 74 HOH HOH . E 5 HOH A 61 661 41 HOH HOH . E 5 HOH A 62 662 45 HOH HOH . E 5 HOH A 63 663 13 HOH HOH . E 5 HOH A 64 664 68 HOH HOH . E 5 HOH A 65 665 6 HOH HOH . E 5 HOH A 66 666 10 HOH HOH . E 5 HOH A 67 667 20 HOH HOH . E 5 HOH A 68 668 63 HOH HOH . E 5 HOH A 69 669 76 HOH HOH . E 5 HOH A 70 670 78 HOH HOH . E 5 HOH A 71 671 15 HOH HOH . E 5 HOH A 72 672 66 HOH HOH . E 5 HOH A 73 673 71 HOH HOH . E 5 HOH A 74 674 35 HOH HOH . E 5 HOH A 75 675 83 HOH HOH . E 5 HOH A 76 676 70 HOH HOH . E 5 HOH A 77 677 4 HOH HOH . E 5 HOH A 78 678 37 HOH HOH . E 5 HOH A 79 679 38 HOH HOH . E 5 HOH A 80 680 61 HOH HOH . E 5 HOH A 81 681 28 HOH HOH . E 5 HOH A 82 682 32 HOH HOH . E 5 HOH A 83 683 55 HOH HOH . E 5 HOH A 84 684 60 HOH HOH . E 5 HOH A 85 685 81 HOH HOH . E 5 HOH A 86 686 42 HOH HOH . E 5 HOH A 87 687 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -21.988 2.546 -17.688 1 26.27 ? PA NAP 501 A 1 HETATM 2 O O1A NAP . . . B 2 -20.913 2.134 -16.748 1 24.48 ? O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . B 2 -23.381 2.919 -17.244 1 28.02 ? O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . B 2 -21.447 3.731 -18.622 1 26.9 ? O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . B 2 -21.982 4.006 -19.919 1 28.8 ? C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . B 2 -21.86 5.495 -20.219 1 29.8 ? C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . B 2 -22.983 6.22 -19.68 1 28.61 ? O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . B 2 -20.631 6.16 -19.594 1 30.4 ? C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . B 2 -19.424 5.882 -20.309 1 32.34 ? O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . B 2 -21.074 7.606 -19.536 1 30.71 ? C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . B 2 -21.046 8.264 -20.805 1 32.63 ? O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . B 2 -22.536 7.449 -19.103 1 29.13 ? C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . B 2 -22.614 7.362 -17.625 1 29.42 ? N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . B 2 -22.926 6.252 -16.894 1 28.46 ? C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . B 2 -22.901 6.525 -15.569 1 28.01 ? N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . B 2 -22.559 7.816 -15.442 1 27.21 ? C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . B 2 -22.342 8.742 -14.323 1 27.88 ? C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . B 2 -22.494 8.301 -13.052 1 27.21 ? N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . B 2 -21.985 10.021 -14.613 1 26.54 ? N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . B 2 -21.84 10.46 -15.88 1 27.07 ? C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . B 2 -22.02 9.671 -16.95 1 27.32 ? N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . B 2 -22.375 8.366 -16.793 1 28.42 ? C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . B 2 -22.244 1.363 -18.777 1 26.46 ? O3 NAP 501 A 1 HETATM 24 P PN NAP . . . B 2 -21.186 0.45 -19.583 1 26.92 ? PN NAP 501 A 1 HETATM 25 O O1N NAP . . . B 2 -22.019 -0.357 -20.586 1 25.4 ? O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . B 2 -20.053 1.328 -20.068 1 26.98 ? O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . B 2 -20.64 -0.611 -18.522 1 27.15 ? O5D NAP 501 A 1 HETATM 28 C C5D NAP . . . B 2 -19.364 -0.482 -17.919 1 27.83 ? C5D NAP 501 A 1 HETATM 29 C C4D NAP . . . B 2 -19.191 -1.571 -16.883 1 27.52 ? C4D NAP 501 A 1 HETATM 30 O O4D NAP . . . B 2 -20.249 -1.594 -15.891 1 27.17 ? O4D NAP 501 A 1 HETATM 31 C C3D NAP . . . B 2 -19.218 -2.917 -17.57 1 26.36 ? C3D NAP 501 A 1 HETATM 32 O O3D NAP . . . B 2 -18.168 -3.731 -17.041 1 26.65 ? O3D NAP 501 A 1 HETATM 33 C C2D NAP . . . B 2 -20.596 -3.488 -17.23 1 25.25 ? C2D NAP 501 A 1 HETATM 34 O O2D NAP . . . B 2 -20.566 -4.913 -17.182 1 25.39 ? O2D NAP 501 A 1 HETATM 35 C C1D NAP . . . B 2 -20.86 -2.9 -15.865 1 24.31 ? C1D NAP 501 A 1 HETATM 36 N N1N NAP . . . B 2 -22.262 -2.678 -15.455 1 24.3 ? N1N NAP 501 A 1 HETATM 37 C C2N NAP . . . B 2 -22.585 -2.895 -14.167 1 21.9 ? C2N NAP 501 A 1 HETATM 38 C C3N NAP . . . B 2 -23.876 -2.644 -13.695 1 23.98 ? C3N NAP 501 A 1 HETATM 39 C C7N NAP . . . B 2 -24.212 -2.929 -12.256 1 24.24 ? C7N NAP 501 A 1 HETATM 40 O O7N NAP . . . B 2 -23.37 -3.422 -11.505 1 25.34 ? O7N NAP 501 A 1 HETATM 41 N N7N NAP . . . B 2 -25.431 -2.632 -11.798 1 24.33 ? N7N NAP 501 A 1 HETATM 42 C C4N NAP . . . B 2 -24.822 -2.107 -14.583 1 23.85 ? C4N NAP 501 A 1 HETATM 43 C C5N NAP . . . B 2 -24.459 -1.863 -15.906 1 25.09 ? C5N NAP 501 A 1 HETATM 44 C C6N NAP . . . B 2 -23.159 -2.146 -16.317 1 23.48 ? C6N NAP 501 A 1 HETATM 45 P P2B NAP . . . B 2 -19.724 9.029 -21.362 1 34.51 ? P2B NAP 501 A 1 HETATM 46 O O1X NAP . . . B 2 -18.598 8.026 -21.376 1 36.68 ? O1X NAP 501 A 1 HETATM 47 O O2X NAP . . . B 2 -20.239 9.488 -22.703 1 34.88 ? O2X NAP 501 A 1 HETATM 48 O O3X NAP . . . B 2 -19.447 10.113 -20.371 1 32.93 ? O3X NAP 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 48 #