data_7E4G # _model_server_result.job_id doipFl7ysMNvmLWATpR8zQ _model_server_result.datetime_utc '2025-08-31 14:23:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":303}' # _entry.id 7E4G # _exptl.entry_id 7E4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.35 _cell.angle_gamma 90 _cell.entry_id 7E4G _cell.length_a 106 _cell.length_b 61.14 _cell.length_c 98.75 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 W N N ? 4 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 188 A LYS 188 1_555 J C15 RET . A RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 B NZ LYS 188 B LYS 188 1_555 W C15 RET . B RET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 C NZ LYS 188 C LYS 188 1_555 LA C15 RET . C RET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 D ZN ZN . A ZN 301 1_555 WA O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc2 D ZN ZN . A ZN 301 1_555 YA O HOH . C HOH 404 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 F ZN ZN . A ZN 303 1_555 G S SO4 . A SO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc4 F ZN ZN . A ZN 303 1_555 G O4 SO4 . A SO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc5 F ZN ZN . A ZN 303 1_555 WA O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 U ZN ZN . B ZN 301 1_555 XA O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc7 U ZN ZN . B ZN 301 1_555 XA O HOH . B HOH 426 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc8 JA ZN ZN . C ZN 301 1_555 YA O HOH . C HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 341 n n C1 C6 RET sing 342 n n C1 C16 RET sing 343 n n C1 C17 RET sing 344 n n C2 C3 RET sing 345 n n C2 H21 RET sing 346 n n C2 H22 RET sing 347 n n C3 C4 RET sing 348 n n C3 H31 RET sing 349 n n C3 H32 RET sing 350 n n C4 C5 RET sing 351 n n C4 H41 RET sing 352 n n C4 H42 RET sing 353 n n C5 C6 RET doub 354 n n C5 C18 RET sing 355 n n C6 C7 RET sing 356 n n C7 C8 RET doub 357 e n C7 H7 RET sing 358 n n C8 C9 RET sing 359 n n C8 H8 RET sing 360 n n C9 C10 RET doub 361 e n C9 C19 RET sing 362 n n C10 C11 RET sing 363 n n C10 H10 RET sing 364 n n C11 C12 RET doub 365 e n C11 H11 RET sing 366 n n C12 C13 RET sing 367 n n C12 H12 RET sing 368 n n C13 C14 RET doub 369 e n C13 C20 RET sing 370 n n C14 C15 RET sing 371 n n C14 H14 RET sing 372 n n C15 O1 RET doub 373 n n C15 H15 RET sing 374 n n C16 H161 RET sing 375 n n C16 H162 RET sing 376 n n C16 H163 RET sing 377 n n C17 H171 RET sing 378 n n C17 H172 RET sing 379 n n C17 H173 RET sing 380 n n C18 H181 RET sing 381 n n C18 H182 RET sing 382 n n C18 H183 RET sing 383 n n C19 H191 RET sing 384 n n C19 H192 RET sing 385 n n C19 H193 RET sing 386 n n C20 H201 RET sing 387 n n C20 H202 RET sing 388 n n C20 H203 RET sing 389 n n # _atom_sites.entry_id 7E4G _atom_sites.fract_transf_matrix[1][1] 0.009434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001554 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 301 201 ZN ZN . E 2 ZN A 1 302 202 ZN ZN . F 2 ZN A 1 303 203 ZN ZN . G 3 SO4 A 1 304 204 SO4 SO4 . H 3 SO4 A 1 305 205 SO4 SO4 . I 3 SO4 A 1 306 206 SO4 SO4 . J 4 RET A 1 307 207 RET RET . K 5 OLC A 1 308 208 OLC OLC . L 5 OLC A 1 309 209 OLC OLC . M 5 OLC A 1 310 210 OLC OLC . N 5 OLC A 1 311 211 OLC OLC . O 5 OLC A 1 312 212 OLC OLC . P 5 OLC A 1 313 213 OLC OLC . Q 5 OLC A 1 314 214 OLC OLC . R 5 OLC A 1 315 215 OLC OLC . S 5 OLC A 1 316 216 OLC OLC . T 5 OLC A 1 317 218 OLC OLC . U 2 ZN B 1 301 201 ZN ZN . V 2 ZN B 1 302 202 ZN ZN . W 4 RET B 1 303 203 RET RET . X 5 OLC B 1 304 204 OLC OLC . Y 5 OLC B 1 305 205 OLC OLC . Z 5 OLC B 1 306 206 OLC OLC . AA 5 OLC B 1 307 207 OLC OLC . BA 5 OLC B 1 308 208 OLC OLC . CA 5 OLC B 1 309 209 OLC OLC . DA 5 OLC B 1 310 210 OLC OLC . EA 5 OLC B 1 311 211 OLC OLC . FA 5 OLC B 1 312 212 OLC OLC . GA 5 OLC B 1 313 213 OLC OLC . HA 5 OLC B 1 314 214 OLC OLC . IA 5 OLC B 1 315 215 OLC OLC . JA 2 ZN C 1 301 201 ZN ZN . KA 3 SO4 C 1 302 202 SO4 SO4 . LA 4 RET C 1 303 203 RET RET . MA 5 OLC C 1 304 204 OLC OLC . NA 5 OLC C 1 305 205 OLC OLC . OA 5 OLC C 1 306 206 OLC OLC . PA 5 OLC C 1 307 207 OLC OLC . QA 5 OLC C 1 308 208 OLC OLC . RA 5 OLC C 1 309 209 OLC OLC . SA 5 OLC C 1 310 210 OLC OLC . TA 5 OLC C 1 311 211 OLC OLC . UA 5 OLC C 1 312 212 OLC OLC . VA 5 OLC C 1 313 213 OLC OLC . WA 6 HOH A 1 401 331 HOH HOH . WA 6 HOH A 2 402 321 HOH HOH . WA 6 HOH A 3 403 323 HOH HOH . WA 6 HOH A 4 404 308 HOH HOH . WA 6 HOH A 5 405 316 HOH HOH . WA 6 HOH A 6 406 349 HOH HOH . WA 6 HOH A 7 407 347 HOH HOH . WA 6 HOH A 8 408 341 HOH HOH . WA 6 HOH A 9 409 309 HOH HOH . WA 6 HOH A 10 410 335 HOH HOH . WA 6 HOH A 11 411 307 HOH HOH . WA 6 HOH A 12 412 304 HOH HOH . WA 6 HOH A 13 413 325 HOH HOH . WA 6 HOH A 14 414 311 HOH HOH . WA 6 HOH A 15 415 302 HOH HOH . WA 6 HOH A 16 416 319 HOH HOH . WA 6 HOH A 17 417 306 HOH HOH . WA 6 HOH A 18 418 322 HOH HOH . WA 6 HOH A 19 419 327 HOH HOH . WA 6 HOH A 20 420 345 HOH HOH . WA 6 HOH A 21 421 334 HOH HOH . WA 6 HOH A 22 422 326 HOH HOH . WA 6 HOH A 23 423 337 HOH HOH . WA 6 HOH A 24 424 328 HOH HOH . WA 6 HOH A 25 425 314 HOH HOH . WA 6 HOH A 26 426 324 HOH HOH . WA 6 HOH A 27 427 318 HOH HOH . WA 6 HOH A 28 428 303 HOH HOH . WA 6 HOH A 29 429 312 HOH HOH . WA 6 HOH A 30 430 315 HOH HOH . WA 6 HOH A 31 431 313 HOH HOH . WA 6 HOH A 32 432 333 HOH HOH . WA 6 HOH A 33 433 330 HOH HOH . WA 6 HOH A 34 434 343 HOH HOH . WA 6 HOH A 35 435 317 HOH HOH . WA 6 HOH A 36 436 305 HOH HOH . WA 6 HOH A 37 437 320 HOH HOH . WA 6 HOH A 38 438 348 HOH HOH . WA 6 HOH A 39 439 344 HOH HOH . WA 6 HOH A 40 440 332 HOH HOH . WA 6 HOH A 41 441 310 HOH HOH . WA 6 HOH A 42 442 329 HOH HOH . WA 6 HOH A 43 443 346 HOH HOH . WA 6 HOH A 44 444 342 HOH HOH . WA 6 HOH A 45 445 339 HOH HOH . WA 6 HOH A 46 446 337 HOH HOH . WA 6 HOH A 47 447 340 HOH HOH . WA 6 HOH A 48 448 350 HOH HOH . WA 6 HOH A 49 449 352 HOH HOH . WA 6 HOH A 50 450 336 HOH HOH . WA 6 HOH A 51 451 338 HOH HOH . WA 6 HOH A 52 452 301 HOH HOH . WA 6 HOH A 53 453 351 HOH HOH . XA 6 HOH B 1 401 336 HOH HOH . XA 6 HOH B 2 402 338 HOH HOH . XA 6 HOH B 3 403 332 HOH HOH . XA 6 HOH B 4 404 320 HOH HOH . XA 6 HOH B 5 405 314 HOH HOH . XA 6 HOH B 6 406 309 HOH HOH . XA 6 HOH B 7 407 318 HOH HOH . XA 6 HOH B 8 408 313 HOH HOH . XA 6 HOH B 9 409 305 HOH HOH . XA 6 HOH B 10 410 337 HOH HOH . XA 6 HOH B 11 411 323 HOH HOH . XA 6 HOH B 12 412 303 HOH HOH . XA 6 HOH B 13 413 311 HOH HOH . XA 6 HOH B 14 414 304 HOH HOH . XA 6 HOH B 15 415 312 HOH HOH . XA 6 HOH B 16 416 308 HOH HOH . XA 6 HOH B 17 417 322 HOH HOH . XA 6 HOH B 18 418 307 HOH HOH . XA 6 HOH B 19 419 302 HOH HOH . XA 6 HOH B 20 420 346 HOH HOH . XA 6 HOH B 21 421 317 HOH HOH . XA 6 HOH B 22 422 306 HOH HOH . XA 6 HOH B 23 423 310 HOH HOH . XA 6 HOH B 24 424 331 HOH HOH . XA 6 HOH B 25 425 319 HOH HOH . XA 6 HOH B 26 426 333 HOH HOH . XA 6 HOH B 27 427 324 HOH HOH . XA 6 HOH B 28 428 344 HOH HOH . XA 6 HOH B 29 429 334 HOH HOH . XA 6 HOH B 30 430 326 HOH HOH . XA 6 HOH B 31 431 315 HOH HOH . XA 6 HOH B 32 432 330 HOH HOH . XA 6 HOH B 33 433 316 HOH HOH . XA 6 HOH B 34 434 325 HOH HOH . XA 6 HOH B 35 435 341 HOH HOH . XA 6 HOH B 36 436 343 HOH HOH . XA 6 HOH B 37 437 347 HOH HOH . XA 6 HOH B 38 438 339 HOH HOH . XA 6 HOH B 39 439 335 HOH HOH . XA 6 HOH B 40 440 301 HOH HOH . XA 6 HOH B 41 441 345 HOH HOH . XA 6 HOH B 42 442 328 HOH HOH . XA 6 HOH B 43 443 340 HOH HOH . XA 6 HOH B 44 444 342 HOH HOH . XA 6 HOH B 45 445 327 HOH HOH . XA 6 HOH B 46 446 321 HOH HOH . YA 6 HOH C 1 401 322 HOH HOH . YA 6 HOH C 2 402 329 HOH HOH . YA 6 HOH C 3 403 326 HOH HOH . YA 6 HOH C 4 404 335 HOH HOH . YA 6 HOH C 5 405 341 HOH HOH . YA 6 HOH C 6 406 345 HOH HOH . YA 6 HOH C 7 407 308 HOH HOH . YA 6 HOH C 8 408 314 HOH HOH . YA 6 HOH C 9 409 325 HOH HOH . YA 6 HOH C 10 410 321 HOH HOH . YA 6 HOH C 11 411 330 HOH HOH . YA 6 HOH C 12 412 328 HOH HOH . YA 6 HOH C 13 413 313 HOH HOH . YA 6 HOH C 14 414 316 HOH HOH . YA 6 HOH C 15 415 306 HOH HOH . YA 6 HOH C 16 416 303 HOH HOH . YA 6 HOH C 17 417 304 HOH HOH . YA 6 HOH C 18 418 310 HOH HOH . YA 6 HOH C 19 419 324 HOH HOH . YA 6 HOH C 20 420 309 HOH HOH . YA 6 HOH C 21 421 307 HOH HOH . YA 6 HOH C 22 422 317 HOH HOH . YA 6 HOH C 23 423 312 HOH HOH . YA 6 HOH C 24 424 336 HOH HOH . YA 6 HOH C 25 425 320 HOH HOH . YA 6 HOH C 26 426 302 HOH HOH . YA 6 HOH C 27 427 305 HOH HOH . YA 6 HOH C 28 428 327 HOH HOH . YA 6 HOH C 29 429 343 HOH HOH . YA 6 HOH C 30 430 333 HOH HOH . YA 6 HOH C 31 431 318 HOH HOH . YA 6 HOH C 32 432 342 HOH HOH . YA 6 HOH C 33 433 344 HOH HOH . YA 6 HOH C 34 434 338 HOH HOH . YA 6 HOH C 35 435 339 HOH HOH . YA 6 HOH C 36 436 311 HOH HOH . YA 6 HOH C 37 437 315 HOH HOH . YA 6 HOH C 38 438 334 HOH HOH . YA 6 HOH C 39 439 319 HOH HOH . YA 6 HOH C 40 440 323 HOH HOH . YA 6 HOH C 41 441 331 HOH HOH . YA 6 HOH C 42 442 301 HOH HOH . YA 6 HOH C 43 443 340 HOH HOH . YA 6 HOH C 44 444 332 HOH HOH . YA 6 HOH C 45 445 329 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . LA 4 -36.106 -2.777 18.769 1 20.37 ? C1 RET 303 C 1 HETATM 2 C C2 RET . . . LA 4 -36.263 -3.742 17.59 1 24.14 ? C2 RET 303 C 1 HETATM 3 C C3 RET . . . LA 4 -35.973 -5.15 17.936 1 29.87 ? C3 RET 303 C 1 HETATM 4 C C4 RET . . . LA 4 -36.946 -5.571 19.023 1 22.04 ? C4 RET 303 C 1 HETATM 5 C C5 RET . . . LA 4 -36.946 -4.635 20.197 1 22.97 ? C5 RET 303 C 1 HETATM 6 C C6 RET . . . LA 4 -36.572 -3.341 20.109 1 19.05 ? C6 RET 303 C 1 HETATM 7 C C7 RET . . . LA 4 -36.608 -2.527 21.321 1 21.4 ? C7 RET 303 C 1 HETATM 8 C C8 RET . . . LA 4 -36.269 -1.209 21.479 1 20.61 ? C8 RET 303 C 1 HETATM 9 C C9 RET . . . LA 4 -36.315 -0.431 22.637 1 24.69 ? C9 RET 303 C 1 HETATM 10 C C10 RET . . . LA 4 -35.93 0.921 22.619 1 19.01 ? C10 RET 303 C 1 HETATM 11 C C11 RET . . . LA 4 -35.9 1.846 23.648 1 25.15 ? C11 RET 303 C 1 HETATM 12 C C12 RET . . . LA 4 -35.495 3.159 23.483 1 27.04 ? C12 RET 303 C 1 HETATM 13 C C13 RET . . . LA 4 -35.41 4.214 24.411 1 25.29 ? C13 RET 303 C 1 HETATM 14 C C14 RET . . . LA 4 -34.969 5.47 23.99 1 28.15 ? C14 RET 303 C 1 HETATM 15 C C15 RET . . . LA 4 -34.792 6.626 24.739 1 27.22 ? C15 RET 303 C 1 HETATM 16 C C16 RET . . . LA 4 -36.911 -1.527 18.376 1 17.28 ? C16 RET 303 C 1 HETATM 17 C C17 RET . . . LA 4 -34.617 -2.396 18.841 1 26.13 ? C17 RET 303 C 1 HETATM 18 C C18 RET . . . LA 4 -37.418 -5.289 21.467 1 22.19 ? C18 RET 303 C 1 HETATM 19 C C19 RET . . . LA 4 -36.764 -0.995 23.934 1 22.55 ? C19 RET 303 C 1 HETATM 20 C C20 RET . . . LA 4 -35.801 3.935 25.814 1 21.62 ? C20 RET 303 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #