data_7E4T # _model_server_result.job_id yVFwsbzGKHXBZox4O3YZPg _model_server_result.datetime_utc '2025-09-12 06:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":802}' # _entry.id 7E4T # _exptl.entry_id 7E4T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 R N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 553 A CYS 553 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 553 B CYS 553 1_555 B SG CYS 558 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 553 C CYS 553 1_555 C SG CYS 558 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 553 D CYS 553 1_555 D SG CYS 558 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A ND1 HIS 172 A HIS 172 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 A SG CYS 176 A CYS 176 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A SG CYS 178 A CYS 178 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A SG CYS 181 A CYS 181 1_555 H ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 A OE1 GLU 418 A GLU 418 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc6 A OD1 ASN 436 A ASN 436 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc7 A OD2 ASP 439 A ASP 439 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc8 B ND1 HIS 172 B HIS 172 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 B SG CYS 176 B CYS 176 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc10 B SG CYS 178 B CYS 178 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 B SG CYS 181 B CYS 181 1_555 N ZN ZN . B ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc12 B OE1 GLU 418 B GLU 418 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc13 B OD1 ASN 436 B ASN 436 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc14 B OD2 ASP 439 B ASP 439 1_555 O CA CA . B CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc15 C ND1 HIS 172 C HIS 172 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc16 C SG CYS 176 C CYS 176 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc17 C SG CYS 178 C CYS 178 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc18 C SG CYS 181 C CYS 181 1_555 T ZN ZN . C ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc19 C OE1 GLU 418 C GLU 418 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc20 C OD1 ASN 436 C ASN 436 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc21 C OD2 ASP 439 C ASP 439 1_555 U CA CA . C CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc22 D ND1 HIS 172 D HIS 172 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc23 D SG CYS 176 D CYS 176 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc24 D SG CYS 178 D CYS 178 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc25 D SG CYS 181 D CYS 181 1_555 Z ZN ZN . D ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc26 D OE1 GLU 418 D GLU 418 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc27 D OD1 ASN 436 D ASN 436 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc28 D OD2 ASP 439 D ASP 439 1_555 AA CA CA . D CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id POV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POPC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C12 POV sing 258 n n N C13 POV sing 259 n n N C14 POV sing 260 n n N C15 POV sing 261 n n P O11 POV sing 262 n n P O12 POV sing 263 n n P O13 POV sing 264 n n P O14 POV doub 265 n n C1 C2 POV sing 266 n n C1 O11 POV sing 267 n n C1 H1 POV sing 268 n n C1 H1A POV sing 269 n n C2 C3 POV sing 270 n n C2 O21 POV sing 271 n n C2 H2 POV sing 272 n n C3 O31 POV sing 273 n n C3 H3 POV sing 274 n n C3 H3A POV sing 275 n n C210 C211 POV sing 276 n n C210 C29 POV doub 277 z n C210 H210 POV sing 278 n n C310 C311 POV sing 279 n n C310 C39 POV sing 280 n n C310 H310 POV sing 281 n n C310 H31A POV sing 282 n n C11 C12 POV sing 283 n n C11 O12 POV sing 284 n n C11 H11 POV sing 285 n n C11 H11A POV sing 286 n n C211 C212 POV sing 287 n n C211 H211 POV sing 288 n n C211 H21A POV sing 289 n n C311 C312 POV sing 290 n n C311 H311 POV sing 291 n n C311 H31B POV sing 292 n n C12 H12 POV sing 293 n n C12 H12A POV sing 294 n n C212 C213 POV sing 295 n n C212 H212 POV sing 296 n n C212 H21B POV sing 297 n n C312 C313 POV sing 298 n n C312 H312 POV sing 299 n n C312 H31C POV sing 300 n n C13 H13 POV sing 301 n n C13 H13A POV sing 302 n n C13 H13B POV sing 303 n n C213 C214 POV sing 304 n n C213 H213 POV sing 305 n n C213 H21C POV sing 306 n n C313 C314 POV sing 307 n n C313 H313 POV sing 308 n n C313 H31D POV sing 309 n n C14 H14 POV sing 310 n n C14 H14A POV sing 311 n n C14 H14B POV sing 312 n n C214 C215 POV sing 313 n n C214 H214 POV sing 314 n n C214 H21D POV sing 315 n n C314 C315 POV sing 316 n n C314 H314 POV sing 317 n n C314 H31E POV sing 318 n n C15 H15 POV sing 319 n n C15 H15A POV sing 320 n n C15 H15B POV sing 321 n n C215 C216 POV sing 322 n n C215 H215 POV sing 323 n n C215 H21E POV sing 324 n n C315 C316 POV sing 325 n n C315 H315 POV sing 326 n n C315 H31F POV sing 327 n n C216 C217 POV sing 328 n n C216 H216 POV sing 329 n n C216 H21F POV sing 330 n n C316 H316 POV sing 331 n n C316 H31G POV sing 332 n n C316 H31H POV sing 333 n n C217 C218 POV sing 334 n n C217 H217 POV sing 335 n n C217 H21G POV sing 336 n n C218 H218 POV sing 337 n n C218 H21H POV sing 338 n n C218 H21J POV sing 339 n n C21 O21 POV sing 340 n n C21 C22 POV sing 341 n n C21 O22 POV doub 342 n n C22 C23 POV sing 343 n n C22 H22 POV sing 344 n n C22 H22A POV sing 345 n n C23 C24 POV sing 346 n n C23 H23 POV sing 347 n n C23 H23A POV sing 348 n n C24 C25 POV sing 349 n n C24 H24 POV sing 350 n n C24 H24A POV sing 351 n n C25 C26 POV sing 352 n n C25 H25 POV sing 353 n n C25 H25A POV sing 354 n n C26 C27 POV sing 355 n n C26 H26 POV sing 356 n n C26 H26A POV sing 357 n n C27 C28 POV sing 358 n n C27 H27 POV sing 359 n n C27 H27A POV sing 360 n n C28 C29 POV sing 361 n n C28 H28 POV sing 362 n n C28 H28A POV sing 363 n n C29 H29 POV sing 364 n n C31 O31 POV sing 365 n n C31 C32 POV sing 366 n n C31 O32 POV doub 367 n n C32 C33 POV sing 368 n n C32 H32 POV sing 369 n n C32 H32A POV sing 370 n n C33 C34 POV sing 371 n n C33 H33 POV sing 372 n n C33 H33A POV sing 373 n n C34 C35 POV sing 374 n n C34 H34 POV sing 375 n n C34 H34A POV sing 376 n n C35 C36 POV sing 377 n n C35 H35 POV sing 378 n n C35 H35A POV sing 379 n n C36 C37 POV sing 380 n n C36 H36 POV sing 381 n n C36 H36A POV sing 382 n n C37 C38 POV sing 383 n n C37 H37 POV sing 384 n n C37 H37A POV sing 385 n n C38 C39 POV sing 386 n n C38 H38 POV sing 387 n n C38 H38A POV sing 388 n n C39 H39 POV sing 389 n n C39 H39A POV sing 390 n n # _atom_sites.entry_id 7E4T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTY A 1 801 801 PTY PTY . F 3 POV A 1 802 901 POV POV . G 4 Y01 A 1 803 1001 Y01 Y01 . H 5 ZN A 1 804 1101 ZN ZN . I 6 CA A 1 805 1201 CA CA . J 7 YZY A 1 806 1301 YZY DAX . K 2 PTY B 1 801 801 PTY PTY . L 3 POV B 1 802 901 POV POV . M 4 Y01 B 1 803 1001 Y01 Y01 . N 5 ZN B 1 804 1101 ZN ZN . O 6 CA B 1 805 1201 CA CA . P 7 YZY B 1 806 1301 YZY DAX . Q 2 PTY C 1 801 801 PTY PTY . R 3 POV C 1 802 901 POV POV . S 4 Y01 C 1 803 1001 Y01 Y01 . T 5 ZN C 1 804 1101 ZN ZN . U 6 CA C 1 805 1201 CA CA . V 7 YZY C 1 806 1301 YZY DAX . W 2 PTY D 1 801 801 PTY PTY . X 3 POV D 1 802 901 POV POV . Y 4 Y01 D 1 803 1001 Y01 Y01 . Z 5 ZN D 1 804 1101 ZN ZN . AA 6 CA D 1 805 1201 CA CA . BA 7 YZY D 1 806 1301 YZY DAX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P POV . . . X 3 144.449 182.176 181.045 1 195 ? P POV 802 D 1 HETATM 2 C C1 POV . . . X 3 145.409 180.701 179.096 1 174.72 ? C1 POV 802 D 1 HETATM 3 C C2 POV . . . X 3 145.303 181.151 177.644 1 175.69 ? C2 POV 802 D 1 HETATM 4 C C3 POV . . . X 3 144.736 180.036 176.772 1 174.28 ? C3 POV 802 D 1 HETATM 5 C C210 POV . . . X 3 149.659 180.947 167.584 1 118.86 ? C210 POV 802 D 1 HETATM 6 C C310 POV . . . X 3 149.689 173.37 166.084 1 126.57 ? C310 POV 802 D 1 HETATM 7 O O11 POV . . . X 3 144.264 181.148 179.819 1 174.97 ? O11 POV 802 D 1 HETATM 8 C C211 POV . . . X 3 150.465 180.22 166.535 1 132.23 ? C211 POV 802 D 1 HETATM 9 C C311 POV . . . X 3 149.79 173.354 164.565 1 118.45 ? C311 POV 802 D 1 HETATM 10 O O12 POV . . . X 3 143.258 181.761 182.046 1 183.06 ? O12 POV 802 D 1 HETATM 11 C C212 POV . . . X 3 149.622 179.143 165.863 1 140.73 ? C212 POV 802 D 1 HETATM 12 C C312 POV . . . X 3 149.964 171.931 164.051 1 123.61 ? C312 POV 802 D 1 HETATM 13 O O13 POV . . . X 3 145.771 181.886 181.714 1 178.88 ? O13 POV 802 D 1 HETATM 14 C C213 POV . . . X 3 150.453 178.399 164.824 1 135.84 ? C213 POV 802 D 1 HETATM 15 O O14 POV . . . X 3 144.16 183.567 180.533 1 192.96 ? O14 POV 802 D 1 HETATM 16 C C214 POV . . . X 3 149.602 177.45 163.99 1 132.52 ? C214 POV 802 D 1 HETATM 17 C C215 POV . . . X 3 148.56 178.215 163.183 1 135.56 ? C215 POV 802 D 1 HETATM 18 C C216 POV . . . X 3 147.988 177.347 162.067 1 141.28 ? C216 POV 802 D 1 HETATM 19 C C217 POV . . . X 3 149.066 176.991 161.05 1 135.42 ? C217 POV 802 D 1 HETATM 20 C C21 POV . . . X 3 146.963 182.887 177.378 1 183.64 ? C21 POV 802 D 1 HETATM 21 O O21 POV . . . X 3 146.594 181.498 177.144 1 179.76 ? O21 POV 802 D 1 HETATM 22 C C22 POV . . . X 3 147.382 183.774 176.226 1 180.57 ? C22 POV 802 D 1 HETATM 23 O O22 POV . . . X 3 146.948 183.331 178.515 1 181.95 ? O22 POV 802 D 1 HETATM 24 C C23 POV . . . X 3 148.551 183.17 175.452 1 170.33 ? C23 POV 802 D 1 HETATM 25 C C24 POV . . . X 3 148.089 182.04 174.54 1 166.81 ? C24 POV 802 D 1 HETATM 26 C C25 POV . . . X 3 149.195 181.573 173.602 1 157.42 ? C25 POV 802 D 1 HETATM 27 C C26 POV . . . X 3 149.069 182.264 172.25 1 151.16 ? C26 POV 802 D 1 HETATM 28 C C27 POV . . . X 3 149.788 181.476 171.163 1 141.38 ? C27 POV 802 D 1 HETATM 29 C C28 POV . . . X 3 149.447 182.033 169.786 1 134.16 ? C28 POV 802 D 1 HETATM 30 C C29 POV . . . X 3 150.238 181.302 168.728 1 118.62 ? C29 POV 802 D 1 HETATM 31 C C31 POV . . . X 3 145.779 178.615 174.993 1 177.37 ? C31 POV 802 D 1 HETATM 32 O O31 POV . . . X 3 145.824 179.24 176.305 1 178.67 ? O31 POV 802 D 1 HETATM 33 C C32 POV . . . X 3 147.038 178.029 174.398 1 165.98 ? C32 POV 802 D 1 HETATM 34 O O32 POV . . . X 3 144.726 178.587 174.376 1 182.35 ? O32 POV 802 D 1 HETATM 35 C C33 POV . . . X 3 146.915 177.975 172.88 1 164.54 ? C33 POV 802 D 1 HETATM 36 C C34 POV . . . X 3 148.131 177.292 172.265 1 161.26 ? C34 POV 802 D 1 HETATM 37 C C35 POV . . . X 3 148.042 177.27 170.744 1 153.88 ? C35 POV 802 D 1 HETATM 38 C C36 POV . . . X 3 148.905 176.152 170.173 1 140.38 ? C36 POV 802 D 1 HETATM 39 C C37 POV . . . X 3 148.838 176.12 168.651 1 142.15 ? C37 POV 802 D 1 HETATM 40 C C38 POV . . . X 3 149.359 174.789 168.123 1 144.71 ? C38 POV 802 D 1 HETATM 41 C C39 POV . . . X 3 149.381 174.77 166.599 1 139.17 ? C39 POV 802 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #