data_7E4Y
#
_model_server_result.job_id            nWdJ7YA9UgQAe5VeE1Z8Eg 
_model_server_result.datetime_utc      '2024-12-23 06:01:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e4y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":503}' 
#
_entry.id    7E4Y 
#
_exptl.entry_id    7E4Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7E4Y 
_cell.length_a            103.991 
_cell.length_b            156.034 
_cell.length_c            182.357 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E4Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc8 G O3G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 U O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 U O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc12 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc13 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc14 K MG MG . B MG 502 1_555 V O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc15 K MG MG . B MG 502 1_555 V O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc16 C OD1 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc17 C OD2 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc18 C O THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc19 C OG1 THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc20 C O GLY 44 C GLY 44 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc21 C OE1 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc22 C OE2 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc23 M O1G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc24 M O1B GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc25 N MG MG . C MG 502 1_555 W O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc26 N MG MG . C MG 502 1_555 W O HOH . C HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc27 N MG MG . C MG 502 1_555 W O HOH . C HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc28 N MG MG . C MG 502 1_555 W O HOH . C HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc29 D OE2 GLU 69 D GLU 71 1_555 R MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc30 P O1G GTP . D GTP 501 1_555 R MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc31 P O2G GTP . D GTP 501 1_555 R MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc32 P O1B GTP . D GTP 501 1_555 R MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc33 R MG MG . D MG 503 1_555 X O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc34 R MG MG . D MG 503 1_555 X O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc35 R MG MG . D MG 503 1_555 X O HOH . D HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc36 F OE1 GLU 331 F GLU 331 1_555 S MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc37 F OE2 GLU 331 F GLU 331 1_555 S MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc38 S MG MG . F MG 401 1_555 T O2G ACP . F ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc39 S MG MG . F MG 401 1_555 T O1B ACP . F ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7E4Y 
_atom_sites.fract_transf_matrix[1][1]    0.009616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006409 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 501 GDP GDP . 
K 6 MG B 1 502 502 MG MG . 
L 9 MES B 1 503 503 MES MES . 
M 5 GTP C 1 501 501 GTP GTP . 
N 6 MG C 1 502 502 MG MG . 
O 7 CA C 1 503 503 CA CA . 
P 5 GTP D 1 501 501 GTP GTP . 
Q 10 BKU D 1 502 1111 BKU DM4 . 
R 6 MG D 1 503 1 MG MG . 
S 6 MG F 1 401 402 MG MG . 
T 11 ACP F 1 402 401 ACP ACP . 
U 12 HOH A 1 601 87 HOH HOH . 
U 12 HOH A 2 602 62 HOH HOH . 
U 12 HOH A 3 603 140 HOH HOH . 
U 12 HOH A 4 604 88 HOH HOH . 
U 12 HOH A 5 605 29 HOH HOH . 
U 12 HOH A 6 606 99 HOH HOH . 
U 12 HOH A 7 607 21 HOH HOH . 
U 12 HOH A 8 608 51 HOH HOH . 
U 12 HOH A 9 609 60 HOH HOH . 
U 12 HOH A 10 610 25 HOH HOH . 
U 12 HOH A 11 611 2 HOH HOH . 
U 12 HOH A 12 612 138 HOH HOH . 
U 12 HOH A 13 613 1 HOH HOH . 
U 12 HOH A 14 614 123 HOH HOH . 
U 12 HOH A 15 615 112 HOH HOH . 
U 12 HOH A 16 616 120 HOH HOH . 
U 12 HOH A 17 617 40 HOH HOH . 
U 12 HOH A 18 618 48 HOH HOH . 
U 12 HOH A 19 619 85 HOH HOH . 
U 12 HOH A 20 620 108 HOH HOH . 
U 12 HOH A 21 621 67 HOH HOH . 
U 12 HOH A 22 622 124 HOH HOH . 
U 12 HOH A 23 623 72 HOH HOH . 
V 12 HOH B 1 601 103 HOH HOH . 
V 12 HOH B 2 602 69 HOH HOH . 
V 12 HOH B 3 603 94 HOH HOH . 
V 12 HOH B 4 604 23 HOH HOH . 
V 12 HOH B 5 605 90 HOH HOH . 
V 12 HOH B 6 606 18 HOH HOH . 
V 12 HOH B 7 607 13 HOH HOH . 
V 12 HOH B 8 608 110 HOH HOH . 
V 12 HOH B 9 609 28 HOH HOH . 
V 12 HOH B 10 610 58 HOH HOH . 
V 12 HOH B 11 611 63 HOH HOH . 
V 12 HOH B 12 612 119 HOH HOH . 
V 12 HOH B 13 613 97 HOH HOH . 
V 12 HOH B 14 614 4 HOH HOH . 
V 12 HOH B 15 615 52 HOH HOH . 
V 12 HOH B 16 616 6 HOH HOH . 
V 12 HOH B 17 617 3 HOH HOH . 
V 12 HOH B 18 618 86 HOH HOH . 
V 12 HOH B 19 619 80 HOH HOH . 
V 12 HOH B 20 620 57 HOH HOH . 
V 12 HOH B 21 621 39 HOH HOH . 
V 12 HOH B 22 622 12 HOH HOH . 
V 12 HOH B 23 623 136 HOH HOH . 
V 12 HOH B 24 624 5 HOH HOH . 
V 12 HOH B 25 625 31 HOH HOH . 
V 12 HOH B 26 626 95 HOH HOH . 
V 12 HOH B 27 627 127 HOH HOH . 
V 12 HOH B 28 628 96 HOH HOH . 
V 12 HOH B 29 629 128 HOH HOH . 
V 12 HOH B 30 630 68 HOH HOH . 
W 12 HOH C 1 601 36 HOH HOH . 
W 12 HOH C 2 602 56 HOH HOH . 
W 12 HOH C 3 603 22 HOH HOH . 
W 12 HOH C 4 604 134 HOH HOH . 
W 12 HOH C 5 605 130 HOH HOH . 
W 12 HOH C 6 606 64 HOH HOH . 
W 12 HOH C 7 607 117 HOH HOH . 
W 12 HOH C 8 608 7 HOH HOH . 
W 12 HOH C 9 609 15 HOH HOH . 
W 12 HOH C 10 610 66 HOH HOH . 
W 12 HOH C 11 611 9 HOH HOH . 
W 12 HOH C 12 612 109 HOH HOH . 
W 12 HOH C 13 613 49 HOH HOH . 
W 12 HOH C 14 614 37 HOH HOH . 
W 12 HOH C 15 615 19 HOH HOH . 
W 12 HOH C 16 616 111 HOH HOH . 
W 12 HOH C 17 617 26 HOH HOH . 
W 12 HOH C 18 618 8 HOH HOH . 
W 12 HOH C 19 619 35 HOH HOH . 
W 12 HOH C 20 620 33 HOH HOH . 
W 12 HOH C 21 621 16 HOH HOH . 
W 12 HOH C 22 622 10 HOH HOH . 
W 12 HOH C 23 623 11 HOH HOH . 
W 12 HOH C 24 624 79 HOH HOH . 
W 12 HOH C 25 625 81 HOH HOH . 
W 12 HOH C 26 626 101 HOH HOH . 
W 12 HOH C 27 627 91 HOH HOH . 
W 12 HOH C 28 628 118 HOH HOH . 
W 12 HOH C 29 629 38 HOH HOH . 
W 12 HOH C 30 630 32 HOH HOH . 
W 12 HOH C 31 631 14 HOH HOH . 
W 12 HOH C 32 632 126 HOH HOH . 
W 12 HOH C 33 633 131 HOH HOH . 
W 12 HOH C 34 634 89 HOH HOH . 
W 12 HOH C 35 635 114 HOH HOH . 
W 12 HOH C 36 636 92 HOH HOH . 
W 12 HOH C 37 637 116 HOH HOH . 
W 12 HOH C 38 638 34 HOH HOH . 
W 12 HOH C 39 639 27 HOH HOH . 
W 12 HOH C 40 640 54 HOH HOH . 
W 12 HOH C 41 641 71 HOH HOH . 
W 12 HOH C 42 642 75 HOH HOH . 
W 12 HOH C 43 643 98 HOH HOH . 
W 12 HOH C 44 644 46 HOH HOH . 
W 12 HOH C 45 645 61 HOH HOH . 
W 12 HOH C 46 646 107 HOH HOH . 
W 12 HOH C 47 647 47 HOH HOH . 
W 12 HOH C 48 648 74 HOH HOH . 
W 12 HOH C 49 649 133 HOH HOH . 
W 12 HOH C 50 650 129 HOH HOH . 
W 12 HOH C 51 651 45 HOH HOH . 
W 12 HOH C 52 652 42 HOH HOH . 
W 12 HOH C 53 653 76 HOH HOH . 
W 12 HOH C 54 654 93 HOH HOH . 
W 12 HOH C 55 655 30 HOH HOH . 
W 12 HOH C 56 656 24 HOH HOH . 
W 12 HOH C 57 657 77 HOH HOH . 
W 12 HOH C 58 658 50 HOH HOH . 
W 12 HOH C 59 659 135 HOH HOH . 
X 12 HOH D 1 601 106 HOH HOH . 
X 12 HOH D 2 602 105 HOH HOH . 
X 12 HOH D 3 603 17 HOH HOH . 
X 12 HOH D 4 604 122 HOH HOH . 
X 12 HOH D 5 605 41 HOH HOH . 
X 12 HOH D 6 606 102 HOH HOH . 
X 12 HOH D 7 607 121 HOH HOH . 
X 12 HOH D 8 608 115 HOH HOH . 
X 12 HOH D 9 609 59 HOH HOH . 
X 12 HOH D 10 610 104 HOH HOH . 
X 12 HOH D 11 611 70 HOH HOH . 
Y 12 HOH E 1 201 44 HOH HOH . 
Y 12 HOH E 2 202 73 HOH HOH . 
Y 12 HOH E 3 203 113 HOH HOH . 
Y 12 HOH E 4 204 53 HOH HOH . 
Z 12 HOH F 1 501 137 HOH HOH . 
Z 12 HOH F 2 502 84 HOH HOH . 
Z 12 HOH F 3 503 65 HOH HOH . 
Z 12 HOH F 4 504 83 HOH HOH . 
Z 12 HOH F 5 505 20 HOH HOH . 
Z 12 HOH F 6 506 55 HOH HOH . 
Z 12 HOH F 7 507 100 HOH HOH . 
Z 12 HOH F 8 508 132 HOH HOH . 
Z 12 HOH F 9 509 78 HOH HOH . 
Z 12 HOH F 10 510 139 HOH HOH . 
Z 12 HOH F 11 511 43 HOH HOH . 
Z 12 HOH F 12 512 82 HOH HOH . 
Z 12 HOH F 13 513 125 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               14.775 
_atom_site.Cartn_y               54.599 
_atom_site.Cartn_z               -11.408 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        54.52 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#