data_7E5F # _model_server_result.job_id nWnGot91x-gp3AgOxspSGA _model_server_result.datetime_utc '2025-01-13 14:37:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7E5F # _exptl.entry_id 7E5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.672 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}benzyl)butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.782 _cell.angle_gamma 90 _cell.entry_id 7E5F _cell.length_a 44.893 _cell.length_b 62.158 _cell.length_c 53.369 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E5F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -31.079 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H41 N O4' _chem_comp.formula_weight 503.672 _chem_comp.id S44 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}benzyl)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-2-{3-[(4-adamantan-1-ylbenzoylamino)methyl]-4-propoxybenzyl} butyric acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O33 C1 S44 sing 277 n n O34 C1 S44 doub 278 n n C1 C2 S44 sing 279 n n C2 C3 S44 sing 280 n n C2 C5 S44 sing 281 n n C3 C4 S44 sing 282 n n C5 C6 S44 sing 283 n n C6 C7 S44 doub 284 n y C6 C11 S44 sing 285 n y C7 C8 S44 sing 286 n y C8 C9 S44 doub 287 n y C8 C12 S44 sing 288 n n C9 C10 S44 sing 289 n y C9 O37 S44 sing 290 n n C10 C11 S44 doub 291 n y O37 C30 S44 sing 292 n n C30 C31 S44 sing 293 n n C31 C32 S44 sing 294 n n C12 N35 S44 sing 295 n n N35 C13 S44 sing 296 n n C13 O36 S44 doub 297 n n C13 C14 S44 sing 298 n n C14 C15 S44 doub 299 n y C14 C19 S44 sing 300 n y C15 C16 S44 sing 301 n y C16 C17 S44 doub 302 n y C17 C18 S44 sing 303 n y C17 C20 S44 sing 304 n n C18 C19 S44 doub 305 n y C20 C21 S44 sing 306 n n C20 C25 S44 sing 307 n n C20 C26 S44 sing 308 n n C21 C22 S44 sing 309 n n C22 C23 S44 sing 310 n n C22 C29 S44 sing 311 n n C23 C24 S44 sing 312 n n C24 C25 S44 sing 313 n n C24 C28 S44 sing 314 n n C26 C27 S44 sing 315 n n C27 C28 S44 sing 316 n n C27 C29 S44 sing 317 n n O33 HO33 S44 sing 318 n n C2 H2 S44 sing 319 n n C3 H3 S44 sing 320 n n C3 H3A S44 sing 321 n n C4 H4 S44 sing 322 n n C4 H4A S44 sing 323 n n C4 H4B S44 sing 324 n n C5 H5 S44 sing 325 n n C5 H5A S44 sing 326 n n C7 H7 S44 sing 327 n n C10 H10 S44 sing 328 n n C11 H11 S44 sing 329 n n C30 H30 S44 sing 330 n n C30 H30A S44 sing 331 n n C31 H31 S44 sing 332 n n C31 H31A S44 sing 333 n n C32 H32 S44 sing 334 n n C32 H32A S44 sing 335 n n C32 H32B S44 sing 336 n n C12 H12 S44 sing 337 n n C12 H12A S44 sing 338 n n N35 HN35 S44 sing 339 n n C15 H15 S44 sing 340 n n C16 H16 S44 sing 341 n n C18 H18 S44 sing 342 n n C19 H19 S44 sing 343 n n C21 H21 S44 sing 344 n n C21 H21A S44 sing 345 n n C22 H22 S44 sing 346 n n C23 H23 S44 sing 347 n n C23 H23A S44 sing 348 n n C24 H24 S44 sing 349 n n C25 H25 S44 sing 350 n n C25 H25A S44 sing 351 n n C26 H26 S44 sing 352 n n C26 H26A S44 sing 353 n n C27 H27 S44 sing 354 n n C28 H28 S44 sing 355 n n C28 H28A S44 sing 356 n n C29 H29 S44 sing 357 n n C29 H29A S44 sing 358 n n # _atom_sites.entry_id 7E5F _atom_sites.fract_transf_matrix[1][1] 0.022275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006296 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S44 A 1 501 1 S44 S44 . C 3 HOH A 1 601 5 HOH HOH . C 3 HOH A 2 602 78 HOH HOH . C 3 HOH A 3 603 94 HOH HOH . C 3 HOH A 4 604 103 HOH HOH . C 3 HOH A 5 605 82 HOH HOH . C 3 HOH A 6 606 45 HOH HOH . C 3 HOH A 7 607 16 HOH HOH . C 3 HOH A 8 608 35 HOH HOH . C 3 HOH A 9 609 95 HOH HOH . C 3 HOH A 10 610 61 HOH HOH . C 3 HOH A 11 611 48 HOH HOH . C 3 HOH A 12 612 91 HOH HOH . C 3 HOH A 13 613 37 HOH HOH . C 3 HOH A 14 614 29 HOH HOH . C 3 HOH A 15 615 71 HOH HOH . C 3 HOH A 16 616 102 HOH HOH . C 3 HOH A 17 617 52 HOH HOH . C 3 HOH A 18 618 1 HOH HOH . C 3 HOH A 19 619 105 HOH HOH . C 3 HOH A 20 620 83 HOH HOH . C 3 HOH A 21 621 51 HOH HOH . C 3 HOH A 22 622 57 HOH HOH . C 3 HOH A 23 623 15 HOH HOH . C 3 HOH A 24 624 13 HOH HOH . C 3 HOH A 25 625 44 HOH HOH . C 3 HOH A 26 626 100 HOH HOH . C 3 HOH A 27 627 20 HOH HOH . C 3 HOH A 28 628 24 HOH HOH . C 3 HOH A 29 629 43 HOH HOH . C 3 HOH A 30 630 74 HOH HOH . C 3 HOH A 31 631 25 HOH HOH . C 3 HOH A 32 632 4 HOH HOH . C 3 HOH A 33 633 7 HOH HOH . C 3 HOH A 34 634 47 HOH HOH . C 3 HOH A 35 635 90 HOH HOH . C 3 HOH A 36 636 3 HOH HOH . C 3 HOH A 37 637 27 HOH HOH . C 3 HOH A 38 638 106 HOH HOH . C 3 HOH A 39 639 81 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 2 HOH HOH . C 3 HOH A 42 642 6 HOH HOH . C 3 HOH A 43 643 17 HOH HOH . C 3 HOH A 44 644 99 HOH HOH . C 3 HOH A 45 645 66 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 19 HOH HOH . C 3 HOH A 48 648 31 HOH HOH . C 3 HOH A 49 649 60 HOH HOH . C 3 HOH A 50 650 53 HOH HOH . C 3 HOH A 51 651 49 HOH HOH . C 3 HOH A 52 652 86 HOH HOH . C 3 HOH A 53 653 55 HOH HOH . C 3 HOH A 54 654 70 HOH HOH . C 3 HOH A 55 655 84 HOH HOH . C 3 HOH A 56 656 64 HOH HOH . C 3 HOH A 57 657 39 HOH HOH . C 3 HOH A 58 658 75 HOH HOH . C 3 HOH A 59 659 76 HOH HOH . C 3 HOH A 60 660 11 HOH HOH . C 3 HOH A 61 661 21 HOH HOH . C 3 HOH A 62 662 38 HOH HOH . C 3 HOH A 63 663 63 HOH HOH . C 3 HOH A 64 664 89 HOH HOH . C 3 HOH A 65 665 58 HOH HOH . C 3 HOH A 66 666 42 HOH HOH . C 3 HOH A 67 667 104 HOH HOH . C 3 HOH A 68 668 18 HOH HOH . C 3 HOH A 69 669 79 HOH HOH . C 3 HOH A 70 670 88 HOH HOH . C 3 HOH A 71 671 72 HOH HOH . C 3 HOH A 72 672 30 HOH HOH . C 3 HOH A 73 673 59 HOH HOH . C 3 HOH A 74 674 73 HOH HOH . C 3 HOH A 75 675 50 HOH HOH . C 3 HOH A 76 676 67 HOH HOH . C 3 HOH A 77 677 28 HOH HOH . C 3 HOH A 78 678 41 HOH HOH . C 3 HOH A 79 679 33 HOH HOH . C 3 HOH A 80 680 10 HOH HOH . C 3 HOH A 81 681 23 HOH HOH . C 3 HOH A 82 682 8 HOH HOH . C 3 HOH A 83 683 97 HOH HOH . C 3 HOH A 84 684 77 HOH HOH . C 3 HOH A 85 685 80 HOH HOH . C 3 HOH A 86 686 12 HOH HOH . C 3 HOH A 87 687 69 HOH HOH . C 3 HOH A 88 688 32 HOH HOH . C 3 HOH A 89 689 98 HOH HOH . C 3 HOH A 90 690 9 HOH HOH . C 3 HOH A 91 691 62 HOH HOH . C 3 HOH A 92 692 36 HOH HOH . C 3 HOH A 93 693 68 HOH HOH . C 3 HOH A 94 694 87 HOH HOH . C 3 HOH A 95 695 107 HOH HOH . C 3 HOH A 96 696 65 HOH HOH . C 3 HOH A 97 697 54 HOH HOH . C 3 HOH A 98 698 96 HOH HOH . C 3 HOH A 99 699 56 HOH HOH . C 3 HOH A 100 700 34 HOH HOH . C 3 HOH A 101 701 22 HOH HOH . C 3 HOH A 102 702 14 HOH HOH . C 3 HOH A 103 703 26 HOH HOH . C 3 HOH A 104 704 85 HOH HOH . C 3 HOH A 105 705 101 HOH HOH . C 3 HOH A 106 706 93 HOH HOH . C 3 HOH A 107 707 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O33 S44 . . . B 2 14.548 3.745 -0.522 1 23.14 ? O33 S44 501 A 1 HETATM 2 O O34 S44 . . . B 2 15.276 1.686 -0.792 1 25.55 ? O34 S44 501 A 1 HETATM 3 C C1 S44 . . . B 2 14.628 2.689 -1.167 1 23.07 ? C1 S44 501 A 1 HETATM 4 C C2 S44 . . . B 2 13.883 2.612 -2.502 1 23.72 ? C2 S44 501 A 1 HETATM 5 C C3 S44 . . . B 2 14.777 1.985 -3.582 1 23.53 ? C3 S44 501 A 1 HETATM 6 C C4 S44 . . . B 2 15.994 2.836 -3.891 1 26.3 ? C4 S44 501 A 1 HETATM 7 C C5 S44 . . . B 2 12.564 1.853 -2.308 1 21.05 ? C5 S44 501 A 1 HETATM 8 C C6 S44 . . . B 2 11.654 1.899 -3.511 1 21.16 ? C6 S44 501 A 1 HETATM 9 C C7 S44 . . . B 2 10.857 3.017 -3.762 1 21.64 ? C7 S44 501 A 1 HETATM 10 C C8 S44 . . . B 2 10.004 3.086 -4.859 1 24.47 ? C8 S44 501 A 1 HETATM 11 C C9 S44 . . . B 2 9.957 1.994 -5.72 1 27.85 ? C9 S44 501 A 1 HETATM 12 C C10 S44 . . . B 2 10.752 0.88 -5.496 1 25.15 ? C10 S44 501 A 1 HETATM 13 C C11 S44 . . . B 2 11.588 0.839 -4.397 1 25.12 ? C11 S44 501 A 1 HETATM 14 O O37 S44 . . . B 2 9.109 2.139 -6.782 1 27.51 ? O37 S44 501 A 1 HETATM 15 C C30 S44 . . . B 2 9.147 1.168 -7.833 1 31 ? C30 S44 501 A 1 HETATM 16 C C31 S44 . . . B 2 8.366 -0.048 -7.432 1 29.79 ? C31 S44 501 A 1 HETATM 17 C C32 S44 . . . B 2 8.261 -1.023 -8.564 1 33.28 ? C32 S44 501 A 1 HETATM 18 C C12 S44 . . . B 2 9.137 4.287 -5.126 1 20.68 ? C12 S44 501 A 1 HETATM 19 N N35 S44 . . . B 2 9.55 5.047 -6.305 1 20.46 ? N35 S44 501 A 1 HETATM 20 C C13 S44 . . . B 2 9.015 6.241 -6.57 1 23.13 ? C13 S44 501 A 1 HETATM 21 O O36 S44 . . . B 2 8.171 6.756 -5.84 1 25.99 ? O36 S44 501 A 1 HETATM 22 C C14 S44 . . . B 2 9.407 6.919 -7.85 1 21.28 ? C14 S44 501 A 1 HETATM 23 C C15 S44 . . . B 2 9.177 8.281 -7.953 1 23.87 ? C15 S44 501 A 1 HETATM 24 C C16 S44 . . . B 2 9.486 8.967 -9.112 1 25.13 ? C16 S44 501 A 1 HETATM 25 C C17 S44 . . . B 2 10.023 8.303 -10.212 1 23.49 ? C17 S44 501 A 1 HETATM 26 C C18 S44 . . . B 2 10.209 6.922 -10.109 1 24.56 ? C18 S44 501 A 1 HETATM 27 C C19 S44 . . . B 2 9.901 6.237 -8.948 1 20.97 ? C19 S44 501 A 1 HETATM 28 C C20 S44 . . . B 2 10.315 9.058 -11.508 1 21.49 ? C20 S44 501 A 1 HETATM 29 C C21 S44 . . . B 2 11.489 8.429 -12.284 1 25.04 ? C21 S44 501 A 1 HETATM 30 C C22 S44 . . . B 2 11.729 9.186 -13.598 1 26.63 ? C22 S44 501 A 1 HETATM 31 C C23 S44 . . . B 2 10.469 9.115 -14.46 1 21.97 ? C23 S44 501 A 1 HETATM 32 C C24 S44 . . . B 2 9.305 9.774 -13.721 1 24.76 ? C24 S44 501 A 1 HETATM 33 C C25 S44 . . . B 2 9.063 9.018 -12.41 1 24.17 ? C25 S44 501 A 1 HETATM 34 C C26 S44 . . . B 2 10.651 10.54 -11.234 1 22.82 ? C26 S44 501 A 1 HETATM 35 C C27 S44 . . . B 2 10.897 11.295 -12.547 1 24.11 ? C27 S44 501 A 1 HETATM 36 C C28 S44 . . . B 2 9.638 11.234 -13.414 1 24.96 ? C28 S44 501 A 1 HETATM 37 C C29 S44 . . . B 2 12.062 10.649 -13.299 1 22.39 ? C29 S44 501 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #