data_7E5G # _model_server_result.job_id LgxZfRq4rqiirpNhbHyq6A _model_server_result.datetime_utc '2025-01-13 20:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7E5G # _exptl.entry_id 7E5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.619 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-butoxy-3-[(pyren-1-ylcarbonylamino)methyl]phenyl]methyl]butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.161 _cell.angle_gamma 90 _cell.entry_id 7E5G _cell.length_a 44.841 _cell.length_b 61.803 _cell.length_c 53.134 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -30.9015 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H33 N O4' _chem_comp.formula_weight 507.619 _chem_comp.id HVX _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-butoxy-3-[(pyren-1-ylcarbonylamino)methyl]phenyl]methyl]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C91 C92 HVX doub 152 n y C91 C89 HVX sing 153 n y C88 C89 HVX doub 154 n y C88 C86 HVX sing 155 n y C92 C98 HVX sing 156 n y C89 C96 HVX sing 157 n y C86 C85 HVX doub 158 n y C98 C99 HVX doub 159 n y C98 C19 HVX sing 160 n y C96 C19 HVX doub 161 n y C96 C95 HVX sing 162 n y C99 C22 HVX sing 163 n y C85 C95 HVX sing 164 n y C19 C17 HVX sing 165 n y C95 C94 HVX doub 166 n y C22 C87 HVX doub 167 n y C17 C87 HVX sing 168 n y C17 C93 HVX doub 169 n y C94 C93 HVX sing 170 n y C87 C97 HVX sing 171 n n C12 C13 HVX sing 172 n n C12 O3 HVX sing 173 n n C14 C13 HVX sing 174 n n C14 C16 HVX sing 175 n n C97 N99 HVX sing 176 n n C97 O99 HVX doub 177 n n O3 C9 HVX sing 178 n n N99 C15 HVX sing 179 n n C9 C10 HVX doub 180 n y C9 C8 HVX sing 181 n y C10 C11 HVX sing 182 n y C15 C8 HVX sing 183 n n C8 C7 HVX doub 184 n y C11 C6 HVX doub 185 n y C7 C6 HVX sing 186 n y C4 C3 HVX sing 187 n n C6 C5 HVX sing 188 n n C3 C2 HVX sing 189 n n C2 C5 HVX sing 190 n n C2 C1 HVX sing 191 n n C1 O1 HVX doub 192 n n C1 O2 HVX sing 193 n n C10 H1 HVX sing 194 n n C11 H2 HVX sing 195 n n C12 H3 HVX sing 196 n n C12 H4 HVX sing 197 n n C13 H5 HVX sing 198 n n C13 H6 HVX sing 199 n n C14 H7 HVX sing 200 n n C14 H8 HVX sing 201 n n C15 H9 HVX sing 202 n n C15 H10 HVX sing 203 n n C16 H11 HVX sing 204 n n C16 H12 HVX sing 205 n n C16 H13 HVX sing 206 n n C2 H14 HVX sing 207 n n C22 H15 HVX sing 208 n n C3 H16 HVX sing 209 n n C3 H17 HVX sing 210 n n C4 H18 HVX sing 211 n n C4 H19 HVX sing 212 n n C4 H20 HVX sing 213 n n C5 H21 HVX sing 214 n n C5 H22 HVX sing 215 n n C7 H23 HVX sing 216 n n C85 H24 HVX sing 217 n n C86 H25 HVX sing 218 n n C88 H26 HVX sing 219 n n C91 H27 HVX sing 220 n n C92 H28 HVX sing 221 n n C93 H29 HVX sing 222 n n C94 H30 HVX sing 223 n n C99 H31 HVX sing 224 n n N99 H32 HVX sing 225 n n O2 H33 HVX sing 226 n n # _atom_sites.entry_id 7E5G _atom_sites.fract_transf_matrix[1][1] 0.022301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006463 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HVX A 1 501 1 HVX JJC . C 3 HOH A 1 601 76 HOH HOH . C 3 HOH A 2 602 21 HOH HOH . C 3 HOH A 3 603 87 HOH HOH . C 3 HOH A 4 604 41 HOH HOH . C 3 HOH A 5 605 49 HOH HOH . C 3 HOH A 6 606 105 HOH HOH . C 3 HOH A 7 607 30 HOH HOH . C 3 HOH A 8 608 84 HOH HOH . C 3 HOH A 9 609 58 HOH HOH . C 3 HOH A 10 610 107 HOH HOH . C 3 HOH A 11 611 36 HOH HOH . C 3 HOH A 12 612 95 HOH HOH . C 3 HOH A 13 613 70 HOH HOH . C 3 HOH A 14 614 114 HOH HOH . C 3 HOH A 15 615 52 HOH HOH . C 3 HOH A 16 616 74 HOH HOH . C 3 HOH A 17 617 31 HOH HOH . C 3 HOH A 18 618 50 HOH HOH . C 3 HOH A 19 619 10 HOH HOH . C 3 HOH A 20 620 37 HOH HOH . C 3 HOH A 21 621 32 HOH HOH . C 3 HOH A 22 622 18 HOH HOH . C 3 HOH A 23 623 2 HOH HOH . C 3 HOH A 24 624 57 HOH HOH . C 3 HOH A 25 625 79 HOH HOH . C 3 HOH A 26 626 15 HOH HOH . C 3 HOH A 27 627 4 HOH HOH . C 3 HOH A 28 628 98 HOH HOH . C 3 HOH A 29 629 68 HOH HOH . C 3 HOH A 30 630 9 HOH HOH . C 3 HOH A 31 631 28 HOH HOH . C 3 HOH A 32 632 106 HOH HOH . C 3 HOH A 33 633 92 HOH HOH . C 3 HOH A 34 634 23 HOH HOH . C 3 HOH A 35 635 3 HOH HOH . C 3 HOH A 36 636 85 HOH HOH . C 3 HOH A 37 637 48 HOH HOH . C 3 HOH A 38 638 103 HOH HOH . C 3 HOH A 39 639 42 HOH HOH . C 3 HOH A 40 640 44 HOH HOH . C 3 HOH A 41 641 78 HOH HOH . C 3 HOH A 42 642 69 HOH HOH . C 3 HOH A 43 643 54 HOH HOH . C 3 HOH A 44 644 33 HOH HOH . C 3 HOH A 45 645 7 HOH HOH . C 3 HOH A 46 646 11 HOH HOH . C 3 HOH A 47 647 12 HOH HOH . C 3 HOH A 48 648 67 HOH HOH . C 3 HOH A 49 649 38 HOH HOH . C 3 HOH A 50 650 100 HOH HOH . C 3 HOH A 51 651 65 HOH HOH . C 3 HOH A 52 652 72 HOH HOH . C 3 HOH A 53 653 1 HOH HOH . C 3 HOH A 54 654 101 HOH HOH . C 3 HOH A 55 655 35 HOH HOH . C 3 HOH A 56 656 24 HOH HOH . C 3 HOH A 57 657 66 HOH HOH . C 3 HOH A 58 658 56 HOH HOH . C 3 HOH A 59 659 26 HOH HOH . C 3 HOH A 60 660 61 HOH HOH . C 3 HOH A 61 661 104 HOH HOH . C 3 HOH A 62 662 111 HOH HOH . C 3 HOH A 63 663 88 HOH HOH . C 3 HOH A 64 664 40 HOH HOH . C 3 HOH A 65 665 47 HOH HOH . C 3 HOH A 66 666 71 HOH HOH . C 3 HOH A 67 667 8 HOH HOH . C 3 HOH A 68 668 86 HOH HOH . C 3 HOH A 69 669 80 HOH HOH . C 3 HOH A 70 670 81 HOH HOH . C 3 HOH A 71 671 14 HOH HOH . C 3 HOH A 72 672 43 HOH HOH . C 3 HOH A 73 673 55 HOH HOH . C 3 HOH A 74 674 20 HOH HOH . C 3 HOH A 75 675 75 HOH HOH . C 3 HOH A 76 676 19 HOH HOH . C 3 HOH A 77 677 39 HOH HOH . C 3 HOH A 78 678 77 HOH HOH . C 3 HOH A 79 679 89 HOH HOH . C 3 HOH A 80 680 13 HOH HOH . C 3 HOH A 81 681 82 HOH HOH . C 3 HOH A 82 682 5 HOH HOH . C 3 HOH A 83 683 46 HOH HOH . C 3 HOH A 84 684 27 HOH HOH . C 3 HOH A 85 685 59 HOH HOH . C 3 HOH A 86 686 17 HOH HOH . C 3 HOH A 87 687 29 HOH HOH . C 3 HOH A 88 688 45 HOH HOH . C 3 HOH A 89 689 83 HOH HOH . C 3 HOH A 90 690 53 HOH HOH . C 3 HOH A 91 691 93 HOH HOH . C 3 HOH A 92 692 113 HOH HOH . C 3 HOH A 93 693 102 HOH HOH . C 3 HOH A 94 694 97 HOH HOH . C 3 HOH A 95 695 25 HOH HOH . C 3 HOH A 96 696 22 HOH HOH . C 3 HOH A 97 697 91 HOH HOH . C 3 HOH A 98 698 16 HOH HOH . C 3 HOH A 99 699 108 HOH HOH . C 3 HOH A 100 700 63 HOH HOH . C 3 HOH A 101 701 99 HOH HOH . C 3 HOH A 102 702 34 HOH HOH . C 3 HOH A 103 703 109 HOH HOH . C 3 HOH A 104 704 51 HOH HOH . C 3 HOH A 105 705 112 HOH HOH . C 3 HOH A 106 706 73 HOH HOH . C 3 HOH A 107 707 110 HOH HOH . C 3 HOH A 108 708 60 HOH HOH . C 3 HOH A 109 709 94 HOH HOH . C 3 HOH A 110 710 90 HOH HOH . C 3 HOH A 111 711 62 HOH HOH . C 3 HOH A 112 712 6 HOH HOH . C 3 HOH A 113 713 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HVX . . . B 2 14.6 3.053 -1.342 1 15.61 ? C1 HVX 501 A 1 HETATM 2 C C10 HVX . . . B 2 10.955 1.44 -5.841 1 25.28 ? C10 HVX 501 A 1 HETATM 3 C C11 HVX . . . B 2 11.678 1.409 -4.665 1 16.68 ? C11 HVX 501 A 1 HETATM 4 C C12 HVX . . . B 2 9.178 1.464 -8.029 1 34.52 ? C12 HVX 501 A 1 HETATM 5 C C13 HVX . . . B 2 8.043 0.765 -7.329 1 36.07 ? C13 HVX 501 A 1 HETATM 6 C C14 HVX . . . B 2 8.084 -0.709 -7.54 1 34.49 ? C14 HVX 501 A 1 HETATM 7 C C15 HVX . . . B 2 9.328 4.854 -5.659 1 13.91 ? C15 HVX 501 A 1 HETATM 8 C C16 HVX . . . B 2 9.265 -1.16 -6.744 1 11.52 ? C16 HVX 501 A 1 HETATM 9 C C17 HVX . . . B 2 9.962 8.148 -9.346 1 20.12 ? C17 HVX 501 A 1 HETATM 10 C C19 HVX . . . B 2 10.431 8.337 -10.676 1 21.49 ? C19 HVX 501 A 1 HETATM 11 C C2 HVX . . . B 2 13.874 3.066 -2.689 1 15.18 ? C2 HVX 501 A 1 HETATM 12 C C22 HVX . . . B 2 10.169 5.748 -9.659 1 19.52 ? C22 HVX 501 A 1 HETATM 13 C C3 HVX . . . B 2 14.705 2.365 -3.778 1 16.55 ? C3 HVX 501 A 1 HETATM 14 C C4 HVX . . . B 2 15.989 3.094 -4.105 1 18.42 ? C4 HVX 501 A 1 HETATM 15 C C5 HVX . . . B 2 12.479 2.45 -2.524 1 13.3 ? C5 HVX 501 A 1 HETATM 16 C C6 HVX . . . B 2 11.669 2.481 -3.794 1 12.95 ? C6 HVX 501 A 1 HETATM 17 C C7 HVX . . . B 2 10.901 3.595 -4.127 1 14 ? C7 HVX 501 A 1 HETATM 18 C C8 HVX . . . B 2 10.144 3.647 -5.292 1 17.89 ? C8 HVX 501 A 1 HETATM 19 C C85 HVX . . . B 2 10.385 12.061 -10.943 1 23.86 ? C85 HVX 501 A 1 HETATM 20 C C86 HVX . . . B 2 10.832 12.235 -12.235 1 23.47 ? C86 HVX 501 A 1 HETATM 21 C C87 HVX . . . B 2 9.821 6.83 -8.845 1 19.62 ? C87 HVX 501 A 1 HETATM 22 C C88 HVX . . . B 2 11.153 11.148 -13.017 1 23.15 ? C88 HVX 501 A 1 HETATM 23 C C89 HVX . . . B 2 11.031 9.845 -12.528 1 22.65 ? C89 HVX 501 A 1 HETATM 24 C C9 HVX . . . B 2 10.196 2.554 -6.155 1 24.73 ? C9 HVX 501 A 1 HETATM 25 C C91 HVX . . . B 2 11.354 8.689 -13.311 1 20.88 ? C91 HVX 501 A 1 HETATM 26 C C92 HVX . . . B 2 11.231 7.445 -12.814 1 21.21 ? C92 HVX 501 A 1 HETATM 27 C C93 HVX . . . B 2 9.635 9.31 -8.564 1 20.67 ? C93 HVX 501 A 1 HETATM 28 C C94 HVX . . . B 2 9.774 10.557 -9.064 1 18.15 ? C94 HVX 501 A 1 HETATM 29 C C95 HVX . . . B 2 10.242 10.781 -10.399 1 20.38 ? C95 HVX 501 A 1 HETATM 30 C C96 HVX . . . B 2 10.568 9.654 -11.201 1 20.69 ? C96 HVX 501 A 1 HETATM 31 C C97 HVX . . . B 2 9.329 6.533 -7.45 1 18.29 ? C97 HVX 501 A 1 HETATM 32 C C98 HVX . . . B 2 10.763 7.212 -11.481 1 17.49 ? C98 HVX 501 A 1 HETATM 33 C C99 HVX . . . B 2 10.621 5.933 -10.945 1 17.7 ? C99 HVX 501 A 1 HETATM 34 N N99 HVX . . . B 2 9.818 5.417 -6.909 1 18.56 ? N99 HVX 501 A 1 HETATM 35 O O1 HVX . . . B 2 15.232 2.024 -1.019 1 15.94 ? O1 HVX 501 A 1 HETATM 36 O O2 HVX . . . B 2 14.483 4.056 -0.616 1 16.6 ? O2 HVX 501 A 1 HETATM 37 O O3 HVX . . . B 2 9.442 2.661 -7.291 1 32.98 ? O3 HVX 501 A 1 HETATM 38 O O99 HVX . . . B 2 8.468 7.223 -6.901 1 25.57 ? O99 HVX 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #