data_7E6Q # _model_server_result.job_id qVEVfkBrMF7xitkP08CpWA _model_server_result.datetime_utc '2024-11-22 07:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7E6Q # _exptl.entry_id 7E6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E6Q _cell.length_a 109.064 _cell.length_b 109.064 _cell.length_c 71.149 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall 'P 4' _symmetry.space_group_name_H-M 'P 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 341 A CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 103 A CYS 184 1_555 A SG CYS 150 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 152 A CYS 233 1_555 A SG CYS 157 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 198 A CYS 279 1_555 A SG CYS 211 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf6 A SG CYS 200 A CYS 281 1_555 A SG CYS 209 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 A SG CYS 237 A CYS 318 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 345 A CYS 426 1_555 A SG CYS 371 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 11 B CYS 92 1_555 B SG CYS 341 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 43 B CYS 124 1_555 B SG CYS 48 B CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 B SG CYS 103 B CYS 184 1_555 B SG CYS 150 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 152 B CYS 233 1_555 B SG CYS 157 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 B SG CYS 198 B CYS 279 1_555 B SG CYS 211 B CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf14 B SG CYS 200 B CYS 281 1_555 B SG CYS 209 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 B SG CYS 237 B CYS 318 1_555 B SG CYS 256 B CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 B SG CYS 345 B CYS 426 1_555 B SG CYS 371 B CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 12 A ASN 93 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 B ND2 ASN 65 B ASN 146 1_555 H C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A O ASP 213 A ASP 294 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A O GLY 217 A GLY 298 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A OD2 ASP 243 A ASP 324 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc4 A O TYR 268 A TYR 349 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 C CA CA . A CA 501 1_555 J O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 B O ASP 213 B ASP 294 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 B O GLY 217 B GLY 298 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc8 B OD2 ASP 243 B ASP 324 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc9 B O TYR 268 B TYR 349 1_555 G CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc10 G CA CA . B CA 501 1_555 K O HOH . B HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 297 n n C1 O1 NAG sing 298 n n C1 O5 NAG sing 299 n n C1 H1 NAG sing 300 n n C2 C3 NAG sing 301 n n C2 N2 NAG sing 302 n n C2 H2 NAG sing 303 n n C3 C4 NAG sing 304 n n C3 O3 NAG sing 305 n n C3 H3 NAG sing 306 n n C4 C5 NAG sing 307 n n C4 O4 NAG sing 308 n n C4 H4 NAG sing 309 n n C5 C6 NAG sing 310 n n C5 O5 NAG sing 311 n n C5 H5 NAG sing 312 n n C6 O6 NAG sing 313 n n C6 H61 NAG sing 314 n n C6 H62 NAG sing 315 n n C7 C8 NAG sing 316 n n C7 N2 NAG sing 317 n n C7 O7 NAG doub 318 n n C8 H81 NAG sing 319 n n C8 H82 NAG sing 320 n n C8 H83 NAG sing 321 n n N2 HN2 NAG sing 322 n n O1 HO1 NAG sing 323 n n O3 HO3 NAG sing 324 n n O4 HO4 NAG sing 325 n n O6 HO6 NAG sing 326 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7E6Q _atom_sites.fract_transf_matrix[1][1] 0.009169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 501 682 CA CA . D 3 NAG A 1 502 882 NAG NAG . E 3 NAG A 1 503 884 NAG NAG . F 4 HZF A 1 504 982 HZF DRG . G 2 CA B 1 501 682 CA CA . H 3 NAG B 1 502 884 NAG NAG . I 4 HZF B 1 503 982 HZF DRG . J 5 HOH A 1 601 35 HOH HOH . J 5 HOH A 2 602 13 HOH HOH . J 5 HOH A 3 603 67 HOH HOH . J 5 HOH A 4 604 37 HOH HOH . J 5 HOH A 5 605 38 HOH HOH . J 5 HOH A 6 606 53 HOH HOH . J 5 HOH A 7 607 85 HOH HOH . J 5 HOH A 8 608 92 HOH HOH . J 5 HOH A 9 609 4 HOH HOH . J 5 HOH A 10 610 32 HOH HOH . J 5 HOH A 11 611 73 HOH HOH . J 5 HOH A 12 612 51 HOH HOH . J 5 HOH A 13 613 111 HOH HOH . J 5 HOH A 14 614 90 HOH HOH . J 5 HOH A 15 615 43 HOH HOH . J 5 HOH A 16 616 78 HOH HOH . J 5 HOH A 17 617 65 HOH HOH . J 5 HOH A 18 618 62 HOH HOH . J 5 HOH A 19 619 91 HOH HOH . J 5 HOH A 20 620 56 HOH HOH . J 5 HOH A 21 621 74 HOH HOH . J 5 HOH A 22 622 6 HOH HOH . J 5 HOH A 23 623 27 HOH HOH . J 5 HOH A 24 624 80 HOH HOH . J 5 HOH A 25 625 12 HOH HOH . J 5 HOH A 26 626 34 HOH HOH . J 5 HOH A 27 627 21 HOH HOH . J 5 HOH A 28 628 100 HOH HOH . J 5 HOH A 29 629 61 HOH HOH . J 5 HOH A 30 630 44 HOH HOH . J 5 HOH A 31 631 41 HOH HOH . J 5 HOH A 32 632 9 HOH HOH . J 5 HOH A 33 633 102 HOH HOH . J 5 HOH A 34 634 18 HOH HOH . J 5 HOH A 35 635 97 HOH HOH . J 5 HOH A 36 636 79 HOH HOH . J 5 HOH A 37 637 20 HOH HOH . J 5 HOH A 38 638 58 HOH HOH . J 5 HOH A 39 639 16 HOH HOH . J 5 HOH A 40 640 63 HOH HOH . J 5 HOH A 41 641 48 HOH HOH . J 5 HOH A 42 642 23 HOH HOH . J 5 HOH A 43 643 66 HOH HOH . J 5 HOH A 44 644 76 HOH HOH . J 5 HOH A 45 645 33 HOH HOH . J 5 HOH A 46 646 75 HOH HOH . J 5 HOH A 47 647 83 HOH HOH . J 5 HOH A 48 648 103 HOH HOH . J 5 HOH A 49 649 110 HOH HOH . K 5 HOH B 1 601 25 HOH HOH . K 5 HOH B 2 602 71 HOH HOH . K 5 HOH B 3 603 28 HOH HOH . K 5 HOH B 4 604 86 HOH HOH . K 5 HOH B 5 605 47 HOH HOH . K 5 HOH B 6 606 55 HOH HOH . K 5 HOH B 7 607 52 HOH HOH . K 5 HOH B 8 608 30 HOH HOH . K 5 HOH B 9 609 64 HOH HOH . K 5 HOH B 10 610 105 HOH HOH . K 5 HOH B 11 611 45 HOH HOH . K 5 HOH B 12 612 5 HOH HOH . K 5 HOH B 13 613 77 HOH HOH . K 5 HOH B 14 614 72 HOH HOH . K 5 HOH B 15 615 46 HOH HOH . K 5 HOH B 16 616 98 HOH HOH . K 5 HOH B 17 617 36 HOH HOH . K 5 HOH B 18 618 70 HOH HOH . K 5 HOH B 19 619 112 HOH HOH . K 5 HOH B 20 620 108 HOH HOH . K 5 HOH B 21 621 31 HOH HOH . K 5 HOH B 22 622 57 HOH HOH . K 5 HOH B 23 623 68 HOH HOH . K 5 HOH B 24 624 54 HOH HOH . K 5 HOH B 25 625 104 HOH HOH . K 5 HOH B 26 626 101 HOH HOH . K 5 HOH B 27 627 84 HOH HOH . K 5 HOH B 28 628 93 HOH HOH . K 5 HOH B 29 629 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 125.183 98.167 3.207 1 80.04 ? C1 NAG 503 A 1 HETATM 2 C C2 NAG . . . E 3 124.038 98.352 4.204 1 83.56 ? C2 NAG 503 A 1 HETATM 3 C C3 NAG . . . E 3 124.568 98.298 5.634 1 85.17 ? C3 NAG 503 A 1 HETATM 4 C C4 NAG . . . E 3 125.354 97.012 5.857 1 86.44 ? C4 NAG 503 A 1 HETATM 5 C C5 NAG . . . E 3 126.451 96.88 4.805 1 83.81 ? C5 NAG 503 A 1 HETATM 6 C C6 NAG . . . E 3 127.208 95.574 4.897 1 85.63 ? C6 NAG 503 A 1 HETATM 7 C C7 NAG . . . E 3 122.146 99.662 3.342 1 78.65 ? C7 NAG 503 A 1 HETATM 8 C C8 NAG . . . E 3 121.553 101.031 3.189 1 75.03 ? C8 NAG 503 A 1 HETATM 9 N N2 NAG . . . E 3 123.328 99.6 3.967 1 81.68 ? N2 NAG 503 A 1 HETATM 10 O O3 NAG . . . E 3 123.481 98.367 6.549 1 88.4 ? O3 NAG 503 A 1 HETATM 11 O O4 NAG . . . E 3 125.942 97.017 7.153 1 89.27 ? O4 NAG 503 A 1 HETATM 12 O O5 NAG . . . E 3 125.876 96.937 3.491 1 82.33 ? O5 NAG 503 A 1 HETATM 13 O O6 NAG . . . E 3 126.452 94.491 4.373 1 85.35 ? O6 NAG 503 A 1 HETATM 14 O O7 NAG . . . E 3 121.58 98.658 2.918 1 77.82 ? O7 NAG 503 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #