data_7E6T # _model_server_result.job_id o6eiGaKn8YGgKT-DuN1h-Q _model_server_result.datetime_utc '2024-11-04 22:41:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":906}' # _entry.id 7E6T # _exptl.entry_id 7E6T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E6T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 B CYS 60 1_555 A SG CYS 82 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 217 B CYS 236 1_555 A SG CYS 542 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 523 B CYS 542 1_555 A SG CYS 543 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 527 B CYS 546 1_555 A SG CYS 546 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 549 B CYS 568 1_555 A SG CYS 563 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 642 B CYS 661 1_555 A SG CYS 672 B CYS 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 217 A CYS 236 1_555 B SG CYS 542 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 339 A CYS 358 1_555 B SG CYS 376 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 523 A CYS 542 1_555 B SG CYS 543 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 527 A CYS 546 1_555 B SG CYS 546 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 642 A CYS 661 1_555 B SG CYS 672 A CYS 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 469 B ASN 488 1_555 G C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 522 B ASN 541 1_555 H C1 NAG . B NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 469 A ASN 488 1_555 N C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 522 A ASN 541 1_555 O C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A OG1 THR 81 B THR 100 1_555 F CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc2 A O PRO 169 B PRO 188 1_555 D CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc3 A OD2 ASP 215 B ASP 234 1_555 E CA CA . B CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 B OG1 THR 81 A THR 100 1_555 M CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc5 B OD2 ASP 215 A ASP 234 1_555 L CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc6 B OH TYR 470 A TYR 489 1_555 K CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7E6T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 B 1 901 1 PO4 PO4 . D 3 CA B 1 902 1 CA CA . E 3 CA B 1 903 2 CA CA . F 3 CA B 1 904 3 CA CA . G 4 NAG B 1 905 865 NAG NAG . H 4 NAG B 1 906 867 NAG NAG . I 5 TCR B 1 907 868 TCR TCR . J 2 PO4 A 1 901 2 PO4 PO4 . K 3 CA A 1 902 4 CA CA . L 3 CA A 1 903 5 CA CA . M 3 CA A 1 904 6 CA CA . N 4 NAG A 1 905 865 NAG NAG . O 4 NAG A 1 906 867 NAG NAG . P 5 TCR A 1 907 868 TCR TCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 161.373 184.704 161.713 1 75.13 ? C1 NAG 906 B 1 HETATM 2 C C2 NAG . . . H 4 160.814 185.603 162.817 1 75.13 ? C2 NAG 906 B 1 HETATM 3 C C3 NAG . . . H 4 161.238 187.052 162.584 1 75.13 ? C3 NAG 906 B 1 HETATM 4 C C4 NAG . . . H 4 162.75 187.146 162.428 1 75.13 ? C4 NAG 906 B 1 HETATM 5 C C5 NAG . . . H 4 163.229 186.188 161.341 1 75.13 ? C5 NAG 906 B 1 HETATM 6 C C6 NAG . . . H 4 164.733 186.143 161.213 1 75.13 ? C6 NAG 906 B 1 HETATM 7 C C7 NAG . . . H 4 158.676 185.685 164.021 1 75.13 ? C7 NAG 906 B 1 HETATM 8 C C8 NAG . . . H 4 157.188 185.544 163.914 1 75.13 ? C8 NAG 906 B 1 HETATM 9 N N2 NAG . . . H 4 159.366 185.501 162.89 1 75.13 ? N2 NAG 906 B 1 HETATM 10 O O3 NAG . . . H 4 160.812 187.855 163.679 1 75.13 ? O3 NAG 906 B 1 HETATM 11 O O4 NAG . . . H 4 163.121 188.475 162.079 1 75.13 ? O4 NAG 906 B 1 HETATM 12 O O5 NAG . . . H 4 162.799 184.853 161.646 1 75.13 ? O5 NAG 906 B 1 HETATM 13 O O6 NAG . . . H 4 165.323 187.383 161.578 1 75.13 ? O6 NAG 906 B 1 HETATM 14 O O7 NAG . . . H 4 159.229 185.954 165.083 1 75.13 ? O7 NAG 906 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #