data_7E6Y # _model_server_result.job_id SWslsOUnFwR_T3rjylBvsQ _model_server_result.datetime_utc '2024-11-28 13:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 7E6Y # _exptl.entry_id 7E6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E6Y _cell.length_a 61.8 _cell.length_b 142.2 _cell.length_c 94.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 47.35 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 E 1 NAG E 701 NAG 2 n B NAG 2 E 2 NAG E 702 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 73 1_555 A SG CYS 75 A CYS 75 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 B C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A NZ LYS 296 A LYS 296 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B O4 NAG . E NAG 1 1_555 B C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 267 n n C10 C9 OLC doub 268 n n C10 C11 OLC sing 269 n n C9 C8 OLC sing 270 n n C17 C16 OLC sing 271 z n C11 C12 OLC sing 272 n n C8 C7 OLC sing 273 n n C24 C22 OLC sing 274 n n C24 O25 OLC sing 275 n n C16 C15 OLC sing 276 n n C12 C13 OLC sing 277 n n C7 C6 OLC sing 278 n n C15 C14 OLC sing 279 n n C13 C14 OLC sing 280 n n C6 C5 OLC sing 281 n n C5 C4 OLC sing 282 n n C4 C3 OLC sing 283 n n C3 C2 OLC sing 284 n n C2 C1 OLC sing 285 n n C21 C22 OLC sing 286 n n C21 O20 OLC sing 287 n n C1 O19 OLC doub 288 n n C1 O20 OLC sing 289 n n C22 O23 OLC sing 290 n n C18 H18 OLC sing 291 n n C18 H18A OLC sing 292 n n C18 H18B OLC sing 293 n n C10 H10 OLC sing 294 n n C9 H9 OLC sing 295 n n C17 H17 OLC sing 296 n n C17 H17A OLC sing 297 n n C11 H11 OLC sing 298 n n C11 H11A OLC sing 299 n n C8 H8 OLC sing 300 n n C8 H8A OLC sing 301 n n C24 H24 OLC sing 302 n n C24 H24A OLC sing 303 n n C16 H16 OLC sing 304 n n C16 H16A OLC sing 305 n n C12 H12 OLC sing 306 n n C12 H12A OLC sing 307 n n C7 H7 OLC sing 308 n n C7 H7A OLC sing 309 n n C15 H15 OLC sing 310 n n C15 H15A OLC sing 311 n n C13 H13 OLC sing 312 n n C13 H13A OLC sing 313 n n C6 H6 OLC sing 314 n n C6 H6A OLC sing 315 n n C14 H14 OLC sing 316 n n C14 H14A OLC sing 317 n n C5 H5 OLC sing 318 n n C5 H5A OLC sing 319 n n C4 H4 OLC sing 320 n n C4 H4A OLC sing 321 n n C3 H3 OLC sing 322 n n C3 H3A OLC sing 323 n n C2 H2 OLC sing 324 n n C2 H2A OLC sing 325 n n C21 H21 OLC sing 326 n n C21 H21A OLC sing 327 n n C22 H22 OLC sing 328 n n O25 HO25 OLC sing 329 n n O23 HO23 OLC sing 330 n n # _atom_sites.entry_id 7E6Y _atom_sites.fract_transf_matrix[1][1] 0.016181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RET A 1 401 401 RET RET . D 4 OLC A 1 402 1 OLC OLC . E 4 OLC A 1 403 2 OLC OLC . F 4 OLC A 1 404 3 OLC OLC . G 4 OLC A 1 405 4 OLC OLC . H 4 OLC A 1 406 5 OLC OLC . I 4 OLC A 1 407 1 OLC OLC . J 4 OLC A 1 408 2 OLC OLC . K 4 OLC A 1 409 3 OLC OLC . L 4 OLC A 1 410 4 OLC OLC . M 5 HOH A 1 501 18 HOH HOH . M 5 HOH A 2 502 17 HOH HOH . M 5 HOH A 3 503 12 HOH HOH . M 5 HOH A 4 504 37 HOH HOH . M 5 HOH A 5 505 6 HOH HOH . M 5 HOH A 6 506 4 HOH HOH . M 5 HOH A 7 507 35 HOH HOH . M 5 HOH A 8 508 8 HOH HOH . M 5 HOH A 9 509 2 HOH HOH . M 5 HOH A 10 510 38 HOH HOH . M 5 HOH A 11 511 25 HOH HOH . M 5 HOH A 12 512 33 HOH HOH . M 5 HOH A 13 513 40 HOH HOH . M 5 HOH A 14 514 7 HOH HOH . M 5 HOH A 15 515 41 HOH HOH . M 5 HOH A 16 516 14 HOH HOH . M 5 HOH A 17 517 28 HOH HOH . M 5 HOH A 18 518 16 HOH HOH . M 5 HOH A 19 519 29 HOH HOH . M 5 HOH A 20 520 1 HOH HOH . M 5 HOH A 21 521 15 HOH HOH . M 5 HOH A 22 522 32 HOH HOH . M 5 HOH A 23 523 24 HOH HOH . M 5 HOH A 24 524 5 HOH HOH . M 5 HOH A 25 525 27 HOH HOH . M 5 HOH A 26 526 20 HOH HOH . M 5 HOH A 27 527 23 HOH HOH . M 5 HOH A 28 528 34 HOH HOH . M 5 HOH A 29 529 21 HOH HOH . M 5 HOH A 30 530 3 HOH HOH . M 5 HOH A 31 531 31 HOH HOH . M 5 HOH A 32 532 11 HOH HOH . M 5 HOH A 33 533 30 HOH HOH . M 5 HOH A 34 534 36 HOH HOH . M 5 HOH A 35 535 22 HOH HOH . M 5 HOH A 36 536 39 HOH HOH . M 5 HOH A 37 537 19 HOH HOH . M 5 HOH A 38 538 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 OLC . . . J 4 -3.505 45.694 4.35 1 54.35 ? C8 OLC 408 A 1 HETATM 2 C C7 OLC . . . J 4 -2.426 45.191 3.409 1 77 ? C7 OLC 408 A 1 HETATM 3 C C6 OLC . . . J 4 -1.274 46.177 3.185 1 73.08 ? C6 OLC 408 A 1 HETATM 4 C C5 OLC . . . J 4 -1.38 47.058 1.928 1 71.28 ? C5 OLC 408 A 1 HETATM 5 C C4 OLC . . . J 4 -2.477 48.134 1.94 1 79.92 ? C4 OLC 408 A 1 HETATM 6 C C3 OLC . . . J 4 -2.037 49.611 1.658 1 78.98 ? C3 OLC 408 A 1 HETATM 7 C C2 OLC . . . J 4 -2.873 50.621 2.419 1 73.24 ? C2 OLC 408 A 1 HETATM 8 C C1 OLC . . . J 4 -2.96 51.999 1.773 1 77.41 ? C1 OLC 408 A 1 HETATM 9 O O19 OLC . . . J 4 -2.338 52.357 0.753 1 70.48 ? O19 OLC 408 A 1 HETATM 10 O O20 OLC . . . J 4 -3.829 52.774 2.47 1 67.31 ? O20 OLC 408 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #