data_7E71
#
_model_server_result.job_id            '_T7OoQcXjcUQ-94y7cd3DQ' 
_model_server_result.datetime_utc      '2024-11-04 22:47:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e71 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":406}' 
#
_entry.id    7E71 
#
_exptl.entry_id    7E71 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7E71 
_cell.length_a            61.8 
_cell.length_b            142.2 
_cell.length_c            94.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E71 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 47.35 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 E 1 NAG E 701 NAG 
2 n B NAG 2 E 2 NAG E 702 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 66 A CYS 66 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
disulf ? disulf2 A SG CYS 73 A CYS 73 1_555 A SG CYS 75 A CYS 75 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 B C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale2 A NZ LYS 296 A LYS 296 1_555 C C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B O4 NAG . E NAG 1 1_555 B C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 267 n n 
C10 C9 OLC doub 268 n n 
C10 C11 OLC sing 269 n n 
C9 C8 OLC sing 270 n n 
C17 C16 OLC sing 271 z n 
C11 C12 OLC sing 272 n n 
C8 C7 OLC sing 273 n n 
C24 C22 OLC sing 274 n n 
C24 O25 OLC sing 275 n n 
C16 C15 OLC sing 276 n n 
C12 C13 OLC sing 277 n n 
C7 C6 OLC sing 278 n n 
C15 C14 OLC sing 279 n n 
C13 C14 OLC sing 280 n n 
C6 C5 OLC sing 281 n n 
C5 C4 OLC sing 282 n n 
C4 C3 OLC sing 283 n n 
C3 C2 OLC sing 284 n n 
C2 C1 OLC sing 285 n n 
C21 C22 OLC sing 286 n n 
C21 O20 OLC sing 287 n n 
C1 O19 OLC doub 288 n n 
C1 O20 OLC sing 289 n n 
C22 O23 OLC sing 290 n n 
C18 H18 OLC sing 291 n n 
C18 H18A OLC sing 292 n n 
C18 H18B OLC sing 293 n n 
C10 H10 OLC sing 294 n n 
C9 H9 OLC sing 295 n n 
C17 H17 OLC sing 296 n n 
C17 H17A OLC sing 297 n n 
C11 H11 OLC sing 298 n n 
C11 H11A OLC sing 299 n n 
C8 H8 OLC sing 300 n n 
C8 H8A OLC sing 301 n n 
C24 H24 OLC sing 302 n n 
C24 H24A OLC sing 303 n n 
C16 H16 OLC sing 304 n n 
C16 H16A OLC sing 305 n n 
C12 H12 OLC sing 306 n n 
C12 H12A OLC sing 307 n n 
C7 H7 OLC sing 308 n n 
C7 H7A OLC sing 309 n n 
C15 H15 OLC sing 310 n n 
C15 H15A OLC sing 311 n n 
C13 H13 OLC sing 312 n n 
C13 H13A OLC sing 313 n n 
C6 H6 OLC sing 314 n n 
C6 H6A OLC sing 315 n n 
C14 H14 OLC sing 316 n n 
C14 H14A OLC sing 317 n n 
C5 H5 OLC sing 318 n n 
C5 H5A OLC sing 319 n n 
C4 H4 OLC sing 320 n n 
C4 H4A OLC sing 321 n n 
C3 H3 OLC sing 322 n n 
C3 H3A OLC sing 323 n n 
C2 H2 OLC sing 324 n n 
C2 H2A OLC sing 325 n n 
C21 H21 OLC sing 326 n n 
C21 H21A OLC sing 327 n n 
C22 H22 OLC sing 328 n n 
O25 HO25 OLC sing 329 n n 
O23 HO23 OLC sing 330 n n 
#
_atom_sites.entry_id                     7E71 
_atom_sites.fract_transf_matrix[1][1]    0.016181 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 RET A 1 401 401 RET RET . 
D 4 OLC A 1 402 1 OLC OLC . 
E 4 OLC A 1 403 2 OLC OLC . 
F 4 OLC A 1 404 3 OLC OLC . 
G 4 OLC A 1 405 4 OLC OLC . 
H 4 OLC A 1 406 5 OLC OLC . 
I 4 OLC A 1 407 1 OLC OLC . 
J 4 OLC A 1 408 2 OLC OLC . 
K 4 OLC A 1 409 3 OLC OLC . 
L 4 OLC A 1 410 4 OLC OLC . 
M 5 HOH A 1 501 14 HOH HOH . 
M 5 HOH A 2 502 16 HOH HOH . 
M 5 HOH A 3 503 25 HOH HOH . 
M 5 HOH A 4 504 6 HOH HOH . 
M 5 HOH A 5 505 11 HOH HOH . 
M 5 HOH A 6 506 30 HOH HOH . 
M 5 HOH A 7 507 37 HOH HOH . 
M 5 HOH A 8 508 17 HOH HOH . 
M 5 HOH A 9 509 27 HOH HOH . 
M 5 HOH A 10 510 5 HOH HOH . 
M 5 HOH A 11 511 20 HOH HOH . 
M 5 HOH A 12 512 28 HOH HOH . 
M 5 HOH A 13 513 8 HOH HOH . 
M 5 HOH A 14 514 2 HOH HOH . 
M 5 HOH A 15 515 41 HOH HOH . 
M 5 HOH A 16 516 33 HOH HOH . 
M 5 HOH A 17 517 7 HOH HOH . 
M 5 HOH A 18 518 34 HOH HOH . 
M 5 HOH A 19 519 24 HOH HOH . 
M 5 HOH A 20 520 40 HOH HOH . 
M 5 HOH A 21 521 3 HOH HOH . 
M 5 HOH A 22 522 29 HOH HOH . 
M 5 HOH A 23 523 15 HOH HOH . 
M 5 HOH A 24 524 18 HOH HOH . 
M 5 HOH A 25 525 23 HOH HOH . 
M 5 HOH A 26 526 1 HOH HOH . 
M 5 HOH A 27 527 31 HOH HOH . 
M 5 HOH A 28 528 38 HOH HOH . 
M 5 HOH A 29 529 36 HOH HOH . 
M 5 HOH A 30 530 4 HOH HOH . 
M 5 HOH A 31 531 32 HOH HOH . 
M 5 HOH A 32 532 12 HOH HOH . 
M 5 HOH A 33 533 21 HOH HOH . 
M 5 HOH A 34 534 19 HOH HOH . 
M 5 HOH A 35 535 26 HOH HOH . 
M 5 HOH A 36 536 22 HOH HOH . 
M 5 HOH A 37 537 35 HOH HOH . 
M 5 HOH A 38 538 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . H 4 -10.318 29.833 23.046 1 54.45 ? C10 OLC 406 A 1 
HETATM 2 C C9 OLC . . . H 4 -10.412 28.793 22.25 1 56.24 ? C9 OLC 406 A 1 
HETATM 3 C C11 OLC . . . H 4 -10.622 31.258 22.682 1 48.3 ? C11 OLC 406 A 1 
HETATM 4 C C8 OLC . . . H 4 -10.253 27.365 22.666 1 60.58 ? C8 OLC 406 A 1 
HETATM 5 C C24 OLC . . . H 4 -15.311 16.534 17.523 1 52.26 ? C24 OLC 406 A 1 
HETATM 6 C C7 OLC . . . H 4 -10.58 26.385 21.561 1 67.68 ? C7 OLC 406 A 1 
HETATM 7 C C6 OLC . . . H 4 -11.84 25.561 21.776 1 63.57 ? C6 OLC 406 A 1 
HETATM 8 C C5 OLC . . . H 4 -12.501 25.099 20.481 1 60.68 ? C5 OLC 406 A 1 
HETATM 9 C C4 OLC . . . H 4 -13.21 23.746 20.574 1 62.76 ? C4 OLC 406 A 1 
HETATM 10 C C3 OLC . . . H 4 -12.947 22.785 19.413 1 62.67 ? C3 OLC 406 A 1 
HETATM 11 C C2 OLC . . . H 4 -13.127 21.357 19.804 1 62.74 ? C2 OLC 406 A 1 
HETATM 12 C C21 OLC . . . H 4 -13.605 18.312 18.046 1 58.1 ? C21 OLC 406 A 1 
HETATM 13 C C1 OLC . . . H 4 -12.67 20.371 18.76 1 63.04 ? C1 OLC 406 A 1 
HETATM 14 C C22 OLC . . . H 4 -14.668 17.832 17.078 1 58.02 ? C22 OLC 406 A 1 
HETATM 15 O O19 OLC . . . H 4 -11.508 20.125 18.506 1 77.29 ? O19 OLC 406 A 1 
HETATM 16 O O25 OLC . . . H 4 -14.918 15.457 16.676 1 55.32 ? O25 OLC 406 A 1 
HETATM 17 O O23 OLC . . . H 4 -15.629 18.885 16.904 1 52.06 ? O23 OLC 406 A 1 
HETATM 18 O O20 OLC . . . H 4 -13.694 19.752 18.17 1 55.39 ? O20 OLC 406 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#