data_7E7I # _model_server_result.job_id 4l-UTDiuMYpnjeXEmn6dyQ _model_server_result.datetime_utc '2024-11-21 12:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2302}' # _entry.id 7E7I # _exptl.entry_id 7E7I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E7I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 D 1 NAG A 2402 NAG 2 n B NAG 2 D 2 NAG A 2403 NAG 2 n B BMA 3 D 3 BMA A 2404 BMA 2 n B BMA 4 D 4 BMA A 2405 BMA 2 n B BMA 5 D 5 BMA A 2406 BMA 2 n C NAG 1 M 1 NAG A 2411 NAG 2 n C NAG 2 M 2 NAG A 2412 NAG 2 n C BMA 3 M 3 BMA A 2413 BMA 2 n C BMA 4 M 4 BMA A 2414 BMA 2 n C BMA 5 M 5 BMA A 2415 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 54 1_555 A SG CYS 102 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 96 A CYS 75 1_555 A SG CYS 345 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 391 A CYS 370 1_555 A SG CYS 540 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 662 A CYS 641 1_555 A SG CYS 1511 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? disulf ? disulf5 A SG CYS 1465 A CYS 1444 1_555 A SG CYS 1476 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? disulf ? disulf6 A SG CYS 1509 A CYS 1488 1_555 A SG CYS 1523 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 119 A ASN 98 1_555 D C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 A ND2 ASN 436 A ASN 415 1_555 B C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 465 A ASN 444 1_555 E C1 NAG . A NAG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 A ND2 ASN 525 A ASN 504 1_555 F C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 A ND2 ASN 1478 A ASN 1457 1_555 G C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 A ND2 ASN 1490 A ASN 1469 1_555 H C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 A ND2 ASN 1550 A ASN 1529 1_555 C C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale8 A ND2 ASN 1609 A ASN 1588 1_555 I C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale9 A ND2 ASN 1683 A ASN 1662 1_555 J C1 NAG . A NAG 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 B O4 NAG . D NAG 1 1_555 B C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale11 B O4 NAG . D NAG 2 1_555 B C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 B O3 BMA . D BMA 3 1_555 B C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 B O6 BMA . D BMA 3 1_555 B C1 BMA . D BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 C O4 NAG . M NAG 1 1_555 C C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale15 C O4 NAG . M NAG 2 1_555 C C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale16 C O3 BMA . M BMA 3 1_555 C C1 BMA . M BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 C O6 BMA . M BMA 3 1_555 C C1 BMA . M BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 391 n n C1 O1 NAG sing 392 n n C1 O5 NAG sing 393 n n C1 H1 NAG sing 394 n n C2 C3 NAG sing 395 n n C2 N2 NAG sing 396 n n C2 H2 NAG sing 397 n n C3 C4 NAG sing 398 n n C3 O3 NAG sing 399 n n C3 H3 NAG sing 400 n n C4 C5 NAG sing 401 n n C4 O4 NAG sing 402 n n C4 H4 NAG sing 403 n n C5 C6 NAG sing 404 n n C5 O5 NAG sing 405 n n C5 H5 NAG sing 406 n n C6 O6 NAG sing 407 n n C6 H61 NAG sing 408 n n C6 H62 NAG sing 409 n n C7 C8 NAG sing 410 n n C7 N2 NAG sing 411 n n C7 O7 NAG doub 412 n n C8 H81 NAG sing 413 n n C8 H82 NAG sing 414 n n C8 H83 NAG sing 415 n n N2 HN2 NAG sing 416 n n O1 HO1 NAG sing 417 n n O3 HO3 NAG sing 418 n n O4 HO4 NAG sing 419 n n O6 HO6 NAG sing 420 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7E7I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 2301 2401 NAG NAG . E 3 NAG A 1 2302 2407 NAG NAG . F 3 NAG A 1 2303 2408 NAG NAG . G 3 NAG A 1 2304 2409 NAG NAG . H 3 NAG A 1 2305 2410 NAG NAG . I 3 NAG A 1 2306 2416 NAG NAG . J 3 NAG A 1 2307 2418 NAG NAG . K 4 3PE A 1 2308 1 3PE PEH . L 4 3PE A 1 2309 2 3PE PEH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 173.442 164.634 69.092 1 98.15 ? C1 NAG 2302 A 1 HETATM 2 C C2 NAG . . . E 3 173.395 165.57 67.868 1 98.15 ? C2 NAG 2302 A 1 HETATM 3 C C3 NAG . . . E 3 174.772 166.163 67.591 1 98.15 ? C3 NAG 2302 A 1 HETATM 4 C C4 NAG . . . E 3 175.545 166.322 68.891 1 98.15 ? C4 NAG 2302 A 1 HETATM 5 C C5 NAG . . . E 3 175.881 164.94 69.435 1 98.15 ? C5 NAG 2302 A 1 HETATM 6 C C6 NAG . . . E 3 176.158 164.936 70.918 1 98.15 ? C6 NAG 2302 A 1 HETATM 7 C C7 NAG . . . E 3 171.903 165.324 65.933 1 98.15 ? C7 NAG 2302 A 1 HETATM 8 C C8 NAG . . . E 3 171.519 164.463 64.768 1 98.15 ? C8 NAG 2302 A 1 HETATM 9 N N2 NAG . . . E 3 172.898 164.864 66.698 1 98.15 ? N2 NAG 2302 A 1 HETATM 10 O O3 NAG . . . E 3 174.628 167.426 66.953 1 98.15 ? O3 NAG 2302 A 1 HETATM 11 O O4 NAG . . . E 3 176.746 167.047 68.66 1 98.15 ? O4 NAG 2302 A 1 HETATM 12 O O5 NAG . . . E 3 174.786 164.034 69.215 1 98.15 ? O5 NAG 2302 A 1 HETATM 13 O O6 NAG . . . E 3 176.012 163.632 71.463 1 98.15 ? O6 NAG 2302 A 1 HETATM 14 O O7 NAG . . . E 3 171.339 166.387 66.17 1 98.15 ? O7 NAG 2302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #