data_7E7M
#
_model_server_result.job_id            UbeZlV3OtK0yTFrOdPl5KA 
_model_server_result.datetime_utc      '2024-11-26 17:22:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7e7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    7E7M 
#
_exptl.entry_id    7E7M 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-ribopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7E7M 
_cell.length_a            39.631 
_cell.length_b            151.22 
_cell.length_c            169.856 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7E7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RIP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-ribopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     'beta-D-ribose;D-ribose;ribose;RIBOSE(PYRANOSE FORM)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RIP sing 277 n n 
C1 O1 RIP sing 278 n n 
C1 O5 RIP sing 279 n n 
C1 H1 RIP sing 280 n n 
C2 C3 RIP sing 281 n n 
C2 O2 RIP sing 282 n n 
C2 H2 RIP sing 283 n n 
C3 C4 RIP sing 284 n n 
C3 O3 RIP sing 285 n n 
C3 H3 RIP sing 286 n n 
C4 C5 RIP sing 287 n n 
C4 O4 RIP sing 288 n n 
C4 H4 RIP sing 289 n n 
C5 O5 RIP sing 290 n n 
C5 H51 RIP sing 291 n n 
C5 H52 RIP sing 292 n n 
O1 HO1 RIP sing 293 n n 
O2 HO2 RIP sing 294 n n 
O3 HO3 RIP sing 295 n n 
O4 HO4 RIP sing 296 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
RIP b-D-ribopyranose 'COMMON NAME' GMML 1 
RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7E7M 
_atom_sites.fract_transf_matrix[1][1]    0.025233 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006613 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005887 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 RIP A 1 401 401 RIP RIP . 
F 2 RIP B 1 401 401 RIP RIP . 
G 2 RIP C 1 401 401 RIP RIP . 
H 2 RIP D 1 401 401 RIP RIP . 
I 3 HOH A 1 501 1 HOH HOH . 
I 3 HOH A 2 502 2 HOH HOH . 
J 3 HOH B 1 501 14 HOH HOH . 
J 3 HOH B 2 502 5 HOH HOH . 
J 3 HOH B 3 503 13 HOH HOH . 
K 3 HOH C 1 501 12 HOH HOH . 
K 3 HOH C 2 502 8 HOH HOH . 
L 3 HOH D 1 501 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIP . . . H 2 8.61 -0.675 -53.494 1 48.71 ? C1 RIP 401 D 1 
HETATM 2 C C2 RIP . . . H 2 9.14 -0.67 -52.06 1 48.71 ? C2 RIP 401 D 1 
HETATM 3 C C3 RIP . . . H 2 10.599 -0.396 -52.034 1 48.71 ? C3 RIP 401 D 1 
HETATM 4 C C4 RIP . . . H 2 11.365 -1.353 -52.88 1 48.71 ? C4 RIP 401 D 1 
HETATM 5 C C5 RIP . . . H 2 10.816 -1.421 -54.306 1 48.71 ? C5 RIP 401 D 1 
HETATM 6 O O1 RIP . . . H 2 7.295 -1.022 -53.497 1 48.71 ? O1 RIP 401 D 1 
HETATM 7 O O2 RIP . . . H 2 8.464 0.314 -51.258 1 48.71 ? O2 RIP 401 D 1 
HETATM 8 O O3 RIP . . . H 2 10.83 0.94 -52.548 1 48.71 ? O3 RIP 401 D 1 
HETATM 9 O O4 RIP . . . H 2 12.708 -0.892 -52.968 1 48.71 ? O4 RIP 401 D 1 
HETATM 10 O O5 RIP . . . H 2 9.36 -1.658 -54.341 1 48.71 ? O5 RIP 401 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#