data_7E7Q # _model_server_result.job_id c2YpZpn-6AOfxsne5M5gyA _model_server_result.datetime_utc '2024-12-26 16:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e7q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2308}' # _entry.id 7E7Q # _exptl.entry_id 7E7Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E7Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 D 1 NAG A 2402 NAG 2 n B NAG 2 D 2 NAG A 2403 NAG 2 n B BMA 3 D 3 BMA A 2404 BMA 2 n B BMA 4 D 4 BMA A 2405 BMA 2 n B BMA 5 D 5 BMA A 2406 BMA 2 n C NAG 1 M 1 NAG A 2411 NAG 2 n C NAG 2 M 2 NAG A 2412 NAG 2 n C BMA 3 M 3 BMA A 2413 BMA 2 n C BMA 4 M 4 BMA A 2414 BMA 2 n C BMA 5 M 5 BMA A 2415 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 54 1_555 A SG CYS 102 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 96 A CYS 75 1_555 A SG CYS 345 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 391 A CYS 370 1_555 A SG CYS 540 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 662 A CYS 641 1_555 A SG CYS 1511 A CYS 1490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? disulf ? disulf5 A SG CYS 1465 A CYS 1444 1_555 A SG CYS 1476 A CYS 1455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 1509 A CYS 1488 1_555 A SG CYS 1523 A CYS 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 119 A ASN 98 1_555 D C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 436 A ASN 415 1_555 B C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 465 A ASN 444 1_555 E C1 NAG . A NAG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 525 A ASN 504 1_555 F C1 NAG . A NAG 2303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale5 A ND2 ASN 1478 A ASN 1457 1_555 G C1 NAG . A NAG 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 A ND2 ASN 1490 A ASN 1469 1_555 H C1 NAG . A NAG 2305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 A ND2 ASN 1550 A ASN 1529 1_555 C C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 A ND2 ASN 1609 A ASN 1588 1_555 I C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 A ND2 ASN 1683 A ASN 1662 1_555 J C1 NAG . A NAG 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 B O4 NAG . D NAG 1 1_555 B C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 B O4 NAG . D NAG 2 1_555 B C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 B O3 BMA . D BMA 3 1_555 B C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale13 B O6 BMA . D BMA 3 1_555 B C1 BMA . D BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 C O4 NAG . M NAG 1 1_555 C C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale15 C O4 NAG . M NAG 2 1_555 C C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale16 C O3 BMA . M BMA 3 1_555 C C1 BMA . M BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale17 C O6 BMA . M BMA 3 1_555 C C1 BMA . M BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A OG1 THR 991 A THR 970 1_555 M MG MG . A MG 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc2 A OE1 GLN 1031 A GLN 1010 1_555 M MG MG . A MG 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc3 A OG1 THR 2000 A THR 1979 1_555 N MG MG . A MG 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 A OE1 GLN 2040 A GLN 2019 1_555 N MG MG . A MG 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 K O3G ATP . A ATP 2308 1_555 M MG MG . A MG 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc6 K O2B ATP . A ATP 2308 1_555 M MG MG . A MG 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 L O2G ATP . A ATP 2309 1_555 N MG MG . A MG 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc8 L O2B ATP . A ATP 2309 1_555 N MG MG . A MG 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7E7Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 2301 2401 NAG NAG . E 3 NAG A 1 2302 2407 NAG NAG . F 3 NAG A 1 2303 2408 NAG NAG . G 3 NAG A 1 2304 2409 NAG NAG . H 3 NAG A 1 2305 2410 NAG NAG . I 3 NAG A 1 2306 2416 NAG NAG . J 3 NAG A 1 2307 2418 NAG NAG . K 4 ATP A 1 2308 1 ATP ATP . L 4 ATP A 1 2309 2 ATP ATP . M 5 MG A 1 2310 3 MG MG . N 5 MG A 1 2311 4 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 4 149.234 150.165 208.438 1 22.75 ? PG ATP 2308 A 1 HETATM 2 O O1G ATP . . . K 4 149.691 149.648 209.76 1 22.75 ? O1G ATP 2308 A 1 HETATM 3 O O2G ATP . . . K 4 147.83 150.672 208.437 1 22.75 ? O2G ATP 2308 A 1 HETATM 4 O O3G ATP . . . K 4 149.581 149.289 207.276 1 22.75 ? O3G ATP 2308 A 1 HETATM 5 P PB ATP . . . K 4 151.73 151.306 208.197 1 22.75 ? PB ATP 2308 A 1 HETATM 6 O O1B ATP . . . K 4 152.203 151.2 209.602 1 22.75 ? O1B ATP 2308 A 1 HETATM 7 O O2B ATP . . . K 4 152.064 150.276 207.174 1 22.75 ? O2B ATP 2308 A 1 HETATM 8 O O3B ATP . . . K 4 150.145 151.462 208.266 1 22.75 ? O3B ATP 2308 A 1 HETATM 9 P PA ATP . . . K 4 153.08 152.808 206.279 1 22.75 ? PA ATP 2308 A 1 HETATM 10 O O1A ATP . . . K 4 152.284 152.191 205.183 1 22.75 ? O1A ATP 2308 A 1 HETATM 11 O O2A ATP . . . K 4 154.498 152.42 206.492 1 22.75 ? O2A ATP 2308 A 1 HETATM 12 O O3A ATP . . . K 4 152.258 152.696 207.642 1 22.75 ? O3A ATP 2308 A 1 HETATM 13 O O5' ATP . . . K 4 153.056 154.378 206.08 1 22.75 ? O5' ATP 2308 A 1 HETATM 14 C C5' ATP . . . K 4 154.232 155.128 206.279 1 22.75 ? C5' ATP 2308 A 1 HETATM 15 C C4' ATP . . . K 4 153.947 156.571 205.913 1 22.75 ? C4' ATP 2308 A 1 HETATM 16 O O4' ATP . . . K 4 154.469 156.802 204.622 1 22.75 ? O4' ATP 2308 A 1 HETATM 17 C C3' ATP . . . K 4 152.48 156.89 205.829 1 22.75 ? C3' ATP 2308 A 1 HETATM 18 O O3' ATP . . . K 4 152.337 158.21 206.322 1 22.75 ? O3' ATP 2308 A 1 HETATM 19 C C2' ATP . . . K 4 152.156 156.965 204.368 1 22.75 ? C2' ATP 2308 A 1 HETATM 20 O O2' ATP . . . K 4 151.238 158.028 204.146 1 22.75 ? O2' ATP 2308 A 1 HETATM 21 C C1' ATP . . . K 4 153.477 157.305 203.745 1 22.75 ? C1' ATP 2308 A 1 HETATM 22 N N9 ATP . . . K 4 153.664 156.596 202.477 1 22.75 ? N9 ATP 2308 A 1 HETATM 23 C C8 ATP . . . K 4 153.544 155.28 202.3 1 22.75 ? C8 ATP 2308 A 1 HETATM 24 N N7 ATP . . . K 4 153.795 154.94 201.022 1 22.75 ? N7 ATP 2308 A 1 HETATM 25 C C5 ATP . . . K 4 154.087 156.07 200.369 1 22.75 ? C5 ATP 2308 A 1 HETATM 26 C C6 ATP . . . K 4 154.441 156.423 198.997 1 22.75 ? C6 ATP 2308 A 1 HETATM 27 N N6 ATP . . . K 4 154.533 155.472 198.057 1 22.75 ? N6 ATP 2308 A 1 HETATM 28 N N1 ATP . . . K 4 154.655 157.706 198.714 1 22.75 ? N1 ATP 2308 A 1 HETATM 29 C C2 ATP . . . K 4 154.559 158.649 199.653 1 22.75 ? C2 ATP 2308 A 1 HETATM 30 N N3 ATP . . . K 4 154.248 158.409 200.928 1 22.75 ? N3 ATP 2308 A 1 HETATM 31 C C4 ATP . . . K 4 153.999 157.155 201.334 1 22.75 ? C4 ATP 2308 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #