data_7E8R # _model_server_result.job_id UyjTBTc7YloccUk22Dvveg _model_server_result.datetime_utc '2024-10-10 16:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7E8R # _exptl.entry_id 7E8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7E8R _cell.length_a 53.159 _cell.length_b 53.159 _cell.length_c 250 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 166.666667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 190 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 190 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 195 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 195 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.049 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 7E8R _atom_sites.fract_transf_matrix[1][1] 0.018811 _atom_sites.fract_transf_matrix[1][2] 0.010861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 2 GOL A 1 403 3 GOL GOL . E 2 GOL A 1 404 4 GOL GOL . F 2 GOL A 1 405 5 GOL GOL . G 2 GOL A 1 406 6 GOL GOL . H 2 GOL A 1 407 7 GOL GOL . I 2 GOL A 1 408 8 GOL GOL . J 2 GOL A 1 409 9 GOL GOL . K 2 GOL A 1 410 10 GOL GOL . L 3 HOH A 1 501 564 HOH HOH . L 3 HOH A 2 502 771 HOH HOH . L 3 HOH A 3 503 598 HOH HOH . L 3 HOH A 4 504 448 HOH HOH . L 3 HOH A 5 505 489 HOH HOH . L 3 HOH A 6 506 610 HOH HOH . L 3 HOH A 7 507 503 HOH HOH . L 3 HOH A 8 508 649 HOH HOH . L 3 HOH A 9 509 627 HOH HOH . L 3 HOH A 10 510 658 HOH HOH . L 3 HOH A 11 511 418 HOH HOH . L 3 HOH A 12 512 404 HOH HOH . L 3 HOH A 13 513 421 HOH HOH . L 3 HOH A 14 514 585 HOH HOH . L 3 HOH A 15 515 496 HOH HOH . L 3 HOH A 16 516 561 HOH HOH . L 3 HOH A 17 517 618 HOH HOH . L 3 HOH A 18 518 645 HOH HOH . L 3 HOH A 19 519 543 HOH HOH . L 3 HOH A 20 520 608 HOH HOH . L 3 HOH A 21 521 523 HOH HOH . L 3 HOH A 22 522 699 HOH HOH . L 3 HOH A 23 523 540 HOH HOH . L 3 HOH A 24 524 617 HOH HOH . L 3 HOH A 25 525 601 HOH HOH . L 3 HOH A 26 526 460 HOH HOH . L 3 HOH A 27 527 723 HOH HOH . L 3 HOH A 28 528 533 HOH HOH . L 3 HOH A 29 529 578 HOH HOH . L 3 HOH A 30 530 463 HOH HOH . L 3 HOH A 31 531 648 HOH HOH . L 3 HOH A 32 532 630 HOH HOH . L 3 HOH A 33 533 642 HOH HOH . L 3 HOH A 34 534 505 HOH HOH . L 3 HOH A 35 535 655 HOH HOH . L 3 HOH A 36 536 487 HOH HOH . L 3 HOH A 37 537 685 HOH HOH . L 3 HOH A 38 538 684 HOH HOH . L 3 HOH A 39 539 536 HOH HOH . L 3 HOH A 40 540 644 HOH HOH . L 3 HOH A 41 541 531 HOH HOH . L 3 HOH A 42 542 567 HOH HOH . L 3 HOH A 43 543 716 HOH HOH . L 3 HOH A 44 544 433 HOH HOH . L 3 HOH A 45 545 544 HOH HOH . L 3 HOH A 46 546 411 HOH HOH . L 3 HOH A 47 547 588 HOH HOH . L 3 HOH A 48 548 499 HOH HOH . L 3 HOH A 49 549 555 HOH HOH . L 3 HOH A 50 550 429 HOH HOH . L 3 HOH A 51 551 451 HOH HOH . L 3 HOH A 52 552 766 HOH HOH . L 3 HOH A 53 553 711 HOH HOH . L 3 HOH A 54 554 456 HOH HOH . L 3 HOH A 55 555 417 HOH HOH . L 3 HOH A 56 556 513 HOH HOH . L 3 HOH A 57 557 662 HOH HOH . L 3 HOH A 58 558 664 HOH HOH . L 3 HOH A 59 559 437 HOH HOH . L 3 HOH A 60 560 545 HOH HOH . L 3 HOH A 61 561 447 HOH HOH . L 3 HOH A 62 562 517 HOH HOH . L 3 HOH A 63 563 416 HOH HOH . L 3 HOH A 64 564 525 HOH HOH . L 3 HOH A 65 565 607 HOH HOH . L 3 HOH A 66 566 467 HOH HOH . L 3 HOH A 67 567 519 HOH HOH . L 3 HOH A 68 568 403 HOH HOH . L 3 HOH A 69 569 479 HOH HOH . L 3 HOH A 70 570 432 HOH HOH . L 3 HOH A 71 571 424 HOH HOH . L 3 HOH A 72 572 497 HOH HOH . L 3 HOH A 73 573 591 HOH HOH . L 3 HOH A 74 574 613 HOH HOH . L 3 HOH A 75 575 502 HOH HOH . L 3 HOH A 76 576 436 HOH HOH . L 3 HOH A 77 577 611 HOH HOH . L 3 HOH A 78 578 568 HOH HOH . L 3 HOH A 79 579 509 HOH HOH . L 3 HOH A 80 580 693 HOH HOH . L 3 HOH A 81 581 717 HOH HOH . L 3 HOH A 82 582 409 HOH HOH . L 3 HOH A 83 583 688 HOH HOH . L 3 HOH A 84 584 665 HOH HOH . L 3 HOH A 85 585 528 HOH HOH . L 3 HOH A 86 586 756 HOH HOH . L 3 HOH A 87 587 631 HOH HOH . L 3 HOH A 88 588 462 HOH HOH . L 3 HOH A 89 589 415 HOH HOH . L 3 HOH A 90 590 408 HOH HOH . L 3 HOH A 91 591 401 HOH HOH . L 3 HOH A 92 592 587 HOH HOH . L 3 HOH A 93 593 423 HOH HOH . L 3 HOH A 94 594 450 HOH HOH . L 3 HOH A 95 595 785 HOH HOH . L 3 HOH A 96 596 446 HOH HOH . L 3 HOH A 97 597 453 HOH HOH . L 3 HOH A 98 598 781 HOH HOH . L 3 HOH A 99 599 794 HOH HOH . L 3 HOH A 100 600 592 HOH HOH . L 3 HOH A 101 601 547 HOH HOH . L 3 HOH A 102 602 542 HOH HOH . L 3 HOH A 103 603 670 HOH HOH . L 3 HOH A 104 604 498 HOH HOH . L 3 HOH A 105 605 474 HOH HOH . L 3 HOH A 106 606 508 HOH HOH . L 3 HOH A 107 607 713 HOH HOH . L 3 HOH A 108 608 735 HOH HOH . L 3 HOH A 109 609 500 HOH HOH . L 3 HOH A 110 610 445 HOH HOH . L 3 HOH A 111 611 459 HOH HOH . L 3 HOH A 112 612 625 HOH HOH . L 3 HOH A 113 613 639 HOH HOH . L 3 HOH A 114 614 612 HOH HOH . L 3 HOH A 115 615 681 HOH HOH . L 3 HOH A 116 616 686 HOH HOH . L 3 HOH A 117 617 559 HOH HOH . L 3 HOH A 118 618 589 HOH HOH . L 3 HOH A 119 619 788 HOH HOH . L 3 HOH A 120 620 481 HOH HOH . L 3 HOH A 121 621 427 HOH HOH . L 3 HOH A 122 622 650 HOH HOH . L 3 HOH A 123 623 455 HOH HOH . L 3 HOH A 124 624 440 HOH HOH . L 3 HOH A 125 625 526 HOH HOH . L 3 HOH A 126 626 426 HOH HOH . L 3 HOH A 127 627 687 HOH HOH . L 3 HOH A 128 628 557 HOH HOH . L 3 HOH A 129 629 514 HOH HOH . L 3 HOH A 130 630 402 HOH HOH . L 3 HOH A 131 631 620 HOH HOH . L 3 HOH A 132 632 634 HOH HOH . L 3 HOH A 133 633 521 HOH HOH . L 3 HOH A 134 634 510 HOH HOH . L 3 HOH A 135 635 504 HOH HOH . L 3 HOH A 136 636 552 HOH HOH . L 3 HOH A 137 637 683 HOH HOH . L 3 HOH A 138 638 538 HOH HOH . L 3 HOH A 139 639 485 HOH HOH . L 3 HOH A 140 640 530 HOH HOH . L 3 HOH A 141 641 405 HOH HOH . L 3 HOH A 142 642 616 HOH HOH . L 3 HOH A 143 643 438 HOH HOH . L 3 HOH A 144 644 790 HOH HOH . L 3 HOH A 145 645 501 HOH HOH . L 3 HOH A 146 646 783 HOH HOH . L 3 HOH A 147 647 708 HOH HOH . L 3 HOH A 148 648 721 HOH HOH . L 3 HOH A 149 649 574 HOH HOH . L 3 HOH A 150 650 515 HOH HOH . L 3 HOH A 151 651 444 HOH HOH . L 3 HOH A 152 652 712 HOH HOH . L 3 HOH A 153 653 434 HOH HOH . L 3 HOH A 154 654 410 HOH HOH . L 3 HOH A 155 655 422 HOH HOH . L 3 HOH A 156 656 560 HOH HOH . L 3 HOH A 157 657 520 HOH HOH . L 3 HOH A 158 658 454 HOH HOH . L 3 HOH A 159 659 669 HOH HOH . L 3 HOH A 160 660 549 HOH HOH . L 3 HOH A 161 661 468 HOH HOH . L 3 HOH A 162 662 425 HOH HOH . L 3 HOH A 163 663 461 HOH HOH . L 3 HOH A 164 664 663 HOH HOH . L 3 HOH A 165 665 626 HOH HOH . L 3 HOH A 166 666 516 HOH HOH . L 3 HOH A 167 667 431 HOH HOH . L 3 HOH A 168 668 583 HOH HOH . L 3 HOH A 169 669 660 HOH HOH . L 3 HOH A 170 670 443 HOH HOH . L 3 HOH A 171 671 412 HOH HOH . L 3 HOH A 172 672 420 HOH HOH . L 3 HOH A 173 673 529 HOH HOH . L 3 HOH A 174 674 795 HOH HOH . L 3 HOH A 175 675 615 HOH HOH . L 3 HOH A 176 676 506 HOH HOH . L 3 HOH A 177 677 573 HOH HOH . L 3 HOH A 178 678 475 HOH HOH . L 3 HOH A 179 679 579 HOH HOH . L 3 HOH A 180 680 439 HOH HOH . L 3 HOH A 181 681 602 HOH HOH . L 3 HOH A 182 682 621 HOH HOH . L 3 HOH A 183 683 736 HOH HOH . L 3 HOH A 184 684 457 HOH HOH . L 3 HOH A 185 685 732 HOH HOH . L 3 HOH A 186 686 550 HOH HOH . L 3 HOH A 187 687 770 HOH HOH . L 3 HOH A 188 688 458 HOH HOH . L 3 HOH A 189 689 476 HOH HOH . L 3 HOH A 190 690 605 HOH HOH . L 3 HOH A 191 691 750 HOH HOH . L 3 HOH A 192 692 604 HOH HOH . L 3 HOH A 193 693 518 HOH HOH . L 3 HOH A 194 694 715 HOH HOH . L 3 HOH A 195 695 789 HOH HOH . L 3 HOH A 196 696 546 HOH HOH . L 3 HOH A 197 697 628 HOH HOH . L 3 HOH A 198 698 493 HOH HOH . L 3 HOH A 199 699 671 HOH HOH . L 3 HOH A 200 700 524 HOH HOH . L 3 HOH A 201 701 413 HOH HOH . L 3 HOH A 202 702 722 HOH HOH . L 3 HOH A 203 703 700 HOH HOH . L 3 HOH A 204 704 494 HOH HOH . L 3 HOH A 205 705 596 HOH HOH . L 3 HOH A 206 706 471 HOH HOH . L 3 HOH A 207 707 548 HOH HOH . L 3 HOH A 208 708 653 HOH HOH . L 3 HOH A 209 709 667 HOH HOH . L 3 HOH A 210 710 773 HOH HOH . L 3 HOH A 211 711 584 HOH HOH . L 3 HOH A 212 712 619 HOH HOH . L 3 HOH A 213 713 695 HOH HOH . L 3 HOH A 214 714 677 HOH HOH . L 3 HOH A 215 715 570 HOH HOH . L 3 HOH A 216 716 776 HOH HOH . L 3 HOH A 217 717 661 HOH HOH . L 3 HOH A 218 718 430 HOH HOH . L 3 HOH A 219 719 729 HOH HOH . L 3 HOH A 220 720 490 HOH HOH . L 3 HOH A 221 721 622 HOH HOH . L 3 HOH A 222 722 603 HOH HOH . L 3 HOH A 223 723 562 HOH HOH . L 3 HOH A 224 724 566 HOH HOH . L 3 HOH A 225 725 791 HOH HOH . L 3 HOH A 226 726 668 HOH HOH . L 3 HOH A 227 727 775 HOH HOH . L 3 HOH A 228 728 593 HOH HOH . L 3 HOH A 229 729 556 HOH HOH . L 3 HOH A 230 730 590 HOH HOH . L 3 HOH A 231 731 580 HOH HOH . L 3 HOH A 232 732 726 HOH HOH . L 3 HOH A 233 733 755 HOH HOH . L 3 HOH A 234 734 554 HOH HOH . L 3 HOH A 235 735 486 HOH HOH . L 3 HOH A 236 736 656 HOH HOH . L 3 HOH A 237 737 632 HOH HOH . L 3 HOH A 238 738 659 HOH HOH . L 3 HOH A 239 739 793 HOH HOH . L 3 HOH A 240 740 731 HOH HOH . L 3 HOH A 241 741 606 HOH HOH . L 3 HOH A 242 742 629 HOH HOH . L 3 HOH A 243 743 534 HOH HOH . L 3 HOH A 244 744 654 HOH HOH . L 3 HOH A 245 745 582 HOH HOH . L 3 HOH A 246 746 682 HOH HOH . L 3 HOH A 247 747 480 HOH HOH . L 3 HOH A 248 748 470 HOH HOH . L 3 HOH A 249 749 488 HOH HOH . L 3 HOH A 250 750 706 HOH HOH . L 3 HOH A 251 751 614 HOH HOH . L 3 HOH A 252 752 464 HOH HOH . L 3 HOH A 253 753 697 HOH HOH . L 3 HOH A 254 754 786 HOH HOH . L 3 HOH A 255 755 635 HOH HOH . L 3 HOH A 256 756 753 HOH HOH . L 3 HOH A 257 757 624 HOH HOH . L 3 HOH A 258 758 469 HOH HOH . L 3 HOH A 259 759 495 HOH HOH . L 3 HOH A 260 760 780 HOH HOH . L 3 HOH A 261 761 535 HOH HOH . L 3 HOH A 262 762 569 HOH HOH . L 3 HOH A 263 763 563 HOH HOH . L 3 HOH A 264 764 787 HOH HOH . L 3 HOH A 265 765 482 HOH HOH . L 3 HOH A 266 766 730 HOH HOH . L 3 HOH A 267 767 792 HOH HOH . L 3 HOH A 268 768 609 HOH HOH . L 3 HOH A 269 769 600 HOH HOH . L 3 HOH A 270 770 676 HOH HOH . L 3 HOH A 271 771 465 HOH HOH . L 3 HOH A 272 772 537 HOH HOH . L 3 HOH A 273 773 572 HOH HOH . L 3 HOH A 274 774 796 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 25.439 -2.386 111.965 1 42.88 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 2 26.595 -2.811 111.31 1 53.96 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 2 25.664 -2.668 113.455 1 34.87 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 2 26.976 -2.474 113.837 1 41.99 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 2 24.673 -1.759 114.187 1 29.74 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 2 24.568 -2.258 115.52 1 49.79 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 119 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #