data_7E9S # _model_server_result.job_id KE831iY34fuYO6nqeNJ4QQ _model_server_result.datetime_utc '2025-07-15 09:27:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7e9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":910}' # _entry.id 7E9S # _exptl.entry_id 7E9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.434 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7E9S _cell.length_a 345.74 _cell.length_b 48.69 _cell.length_c 63.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7E9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 617 A CYS 617 1_555 B SG CYS 9 B CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B C TYR 3 B TYR 3 1_555 B N DAB 4 B DAB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C DAB 4 B DAB 4 1_555 B N VAL 5 B VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD2 ASP 47 A ASP 47 1_555 C MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A OD2 ASP 161 A ASP 161 1_555 C MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 A NE2 HIS 163 A HIS 163 1_555 C MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C17 H32 O4' _chem_comp.formula_weight 300.434 _chem_comp.id 7E8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-DIHYDROXYPROPYL (7Z)-TETRADEC-7-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.7 MAG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 7E8 sing 1 n n C19 C18 7E8 sing 2 n n O20 C18 7E8 sing 3 n n C17 O16 7E8 sing 4 n n C17 C18 7E8 sing 5 n n O16 C8 7E8 sing 6 n n C8 O15 7E8 doub 7 n n C8 C7 7E8 sing 8 n n C7 C6 7E8 sing 9 n n C6 C5 7E8 sing 10 n n C5 C4 7E8 sing 11 n n C4 C3 7E8 sing 12 n n C3 C2 7E8 sing 13 n n C2 C1 7E8 doub 14 n n C1 C9 7E8 sing 15 n n C9 C10 7E8 sing 16 n n C10 C11 7E8 sing 17 n n C11 C12 7E8 sing 18 n n C12 C13 7E8 sing 19 n n C13 C14 7E8 sing 20 n n O22 H22 7E8 sing 21 n n C19 H191 7E8 sing 22 n n C19 H192 7E8 sing 23 n n C18 H18 7E8 sing 24 n n O20 H20 7E8 sing 25 n n C17 H171 7E8 sing 26 n n C17 H172 7E8 sing 27 n n C7 H7 7E8 sing 28 n n C7 H8 7E8 sing 29 n n C6 H61C 7E8 sing 30 z n C6 H62C 7E8 sing 31 n n C5 H51C 7E8 sing 32 n n C5 H52C 7E8 sing 33 n n C4 H41C 7E8 sing 34 n n C4 H42C 7E8 sing 35 n n C3 H31C 7E8 sing 36 n n C3 H32C 7E8 sing 37 n n C2 H2 7E8 sing 38 n n C1 H1 7E8 sing 39 n n C9 H91C 7E8 sing 40 n n C9 H92C 7E8 sing 41 n n C10 H101 7E8 sing 42 n n C10 H102 7E8 sing 43 n n C11 H111 7E8 sing 44 n n C11 H112 7E8 sing 45 n n C12 H121 7E8 sing 46 n n C12 H122 7E8 sing 47 n n C13 H131 7E8 sing 48 n n C13 H132 7E8 sing 49 n n C14 H141 7E8 sing 50 n n C14 H142 7E8 sing 51 n n C14 H143 7E8 sing 52 n n # _atom_sites.entry_id 7E9S _atom_sites.fract_transf_matrix[1][1] 0.002892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 901 1 MN MN . D 4 J06 A 1 902 1 J06 D60 . E 5 PEG A 1 903 1 PEG PG2 . F 5 PEG A 1 904 2 PEG PG2 . G 5 PEG A 1 905 3 PEG PG2 . H 5 PEG A 1 906 4 PEG PG2 . I 5 PEG A 1 907 5 PEG PG2 . J 6 7E8 A 1 908 1 7E8 7MG . K 6 7E8 A 1 909 2 7E8 7MG . L 6 7E8 A 1 910 3 7E8 7MG . M 6 7E8 A 1 911 4 7E8 7MG . N 7 HOH A 1 1001 13 HOH HOH . N 7 HOH A 2 1002 11 HOH HOH . N 7 HOH A 3 1003 6 HOH HOH . N 7 HOH A 4 1004 14 HOH HOH . N 7 HOH A 5 1005 15 HOH HOH . N 7 HOH A 6 1006 12 HOH HOH . N 7 HOH A 7 1007 3 HOH HOH . N 7 HOH A 8 1008 5 HOH HOH . N 7 HOH A 9 1009 8 HOH HOH . N 7 HOH A 10 1010 2 HOH HOH . N 7 HOH A 11 1011 7 HOH HOH . N 7 HOH A 12 1012 1 HOH HOH . N 7 HOH A 13 1013 4 HOH HOH . N 7 HOH A 14 1014 16 HOH HOH . N 7 HOH A 15 1015 10 HOH HOH . N 7 HOH A 16 1016 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 7E8 . . . L 6 -72.434 16.565 33.244 1 91.47 ? O22 7E8 910 A 1 HETATM 2 C C19 7E8 . . . L 6 -71.128 16.325 33.847 1 80.43 ? C19 7E8 910 A 1 HETATM 3 O O20 7E8 . . . L 6 -72.212 15.3 35.775 1 108.5 ? O20 7E8 910 A 1 HETATM 4 C C17 7E8 . . . L 6 -71.792 13.817 33.895 1 90.37 ? C17 7E8 910 A 1 HETATM 5 O O16 7E8 . . . L 6 -72.025 14.225 32.515 1 84.38 ? O16 7E8 910 A 1 HETATM 6 C C8 7E8 . . . L 6 -73.04 13.493 31.83 1 78.98 ? C8 7E8 910 A 1 HETATM 7 O O15 7E8 . . . L 6 -72.782 13.094 30.684 1 76.7 ? O15 7E8 910 A 1 HETATM 8 C C7 7E8 . . . L 6 -74.404 13.222 32.512 1 81.88 ? C7 7E8 910 A 1 HETATM 9 C C6 7E8 . . . L 6 -75.589 13.077 31.489 1 77.83 ? C6 7E8 910 A 1 HETATM 10 C C5 7E8 . . . L 6 -76.708 12.05 31.903 1 70.14 ? C5 7E8 910 A 1 HETATM 11 C C4 7E8 . . . L 6 -76.765 10.771 31.001 1 74.15 ? C4 7E8 910 A 1 HETATM 12 C C3 7E8 . . . L 6 -77.944 9.781 31.292 1 76.4 ? C3 7E8 910 A 1 HETATM 13 C C2 7E8 . . . L 6 -78.195 8.81 30.151 1 72.96 ? C2 7E8 910 A 1 HETATM 14 C C1 7E8 . . . L 6 -79.019 7.72 30.246 1 84.84 ? C1 7E8 910 A 1 HETATM 15 C C9 7E8 . . . L 6 -79.796 7.357 31.505 1 86.95 ? C9 7E8 910 A 1 HETATM 16 C C10 7E8 . . . L 6 -80.992 6.377 31.224 1 87.37 ? C10 7E8 910 A 1 HETATM 17 C C11 7E8 . . . L 6 -82.332 6.753 31.946 1 91.04 ? C11 7E8 910 A 1 HETATM 18 C C12 7E8 . . . L 6 -83.402 7.416 31.003 1 91.14 ? C12 7E8 910 A 1 HETATM 19 C C13 7E8 . . . L 6 -84.437 8.331 31.731 1 87.86 ? C13 7E8 910 A 1 HETATM 20 C C14 7E8 . . . L 6 -84.426 9.807 31.252 1 77.89 ? C14 7E8 910 A 1 HETATM 21 C C18 7E8 . . . L 6 -71.24 15.042 34.729 1 87.36 ? C18 7E8 910 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #