data_7EAD # _model_server_result.job_id C3yqbcsAay3s4xv9o3BHNw _model_server_result.datetime_utc '2025-01-25 11:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ead # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7EAD # _exptl.entry_id 7EAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EAD _cell.length_a 38.83 _cell.length_b 81.225 _cell.length_c 82.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 7EAD _atom_sites.fract_transf_matrix[1][1] 0.025753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEC . C 3 HOH A 1 301 22 HOH HOH . C 3 HOH A 2 302 33 HOH HOH . C 3 HOH A 3 303 55 HOH HOH . C 3 HOH A 4 304 116 HOH HOH . C 3 HOH A 5 305 79 HOH HOH . C 3 HOH A 6 306 87 HOH HOH . C 3 HOH A 7 307 21 HOH HOH . C 3 HOH A 8 308 47 HOH HOH . C 3 HOH A 9 309 122 HOH HOH . C 3 HOH A 10 310 17 HOH HOH . C 3 HOH A 11 311 25 HOH HOH . C 3 HOH A 12 312 67 HOH HOH . C 3 HOH A 13 313 11 HOH HOH . C 3 HOH A 14 314 4 HOH HOH . C 3 HOH A 15 315 77 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 89 HOH HOH . C 3 HOH A 18 318 36 HOH HOH . C 3 HOH A 19 319 28 HOH HOH . C 3 HOH A 20 320 73 HOH HOH . C 3 HOH A 21 321 1 HOH HOH . C 3 HOH A 22 322 48 HOH HOH . C 3 HOH A 23 323 98 HOH HOH . C 3 HOH A 24 324 9 HOH HOH . C 3 HOH A 25 325 56 HOH HOH . C 3 HOH A 26 326 8 HOH HOH . C 3 HOH A 27 327 38 HOH HOH . C 3 HOH A 28 328 3 HOH HOH . C 3 HOH A 29 329 60 HOH HOH . C 3 HOH A 30 330 70 HOH HOH . C 3 HOH A 31 331 91 HOH HOH . C 3 HOH A 32 332 40 HOH HOH . C 3 HOH A 33 333 15 HOH HOH . C 3 HOH A 34 334 69 HOH HOH . C 3 HOH A 35 335 7 HOH HOH . C 3 HOH A 36 336 14 HOH HOH . C 3 HOH A 37 337 104 HOH HOH . C 3 HOH A 38 338 46 HOH HOH . C 3 HOH A 39 339 10 HOH HOH . C 3 HOH A 40 340 68 HOH HOH . C 3 HOH A 41 341 61 HOH HOH . C 3 HOH A 42 342 65 HOH HOH . C 3 HOH A 43 343 44 HOH HOH . C 3 HOH A 44 344 72 HOH HOH . C 3 HOH A 45 345 30 HOH HOH . C 3 HOH A 46 346 18 HOH HOH . C 3 HOH A 47 347 54 HOH HOH . C 3 HOH A 48 348 42 HOH HOH . C 3 HOH A 49 349 58 HOH HOH . C 3 HOH A 50 350 2 HOH HOH . C 3 HOH A 51 351 32 HOH HOH . C 3 HOH A 52 352 43 HOH HOH . C 3 HOH A 53 353 12 HOH HOH . C 3 HOH A 54 354 50 HOH HOH . C 3 HOH A 55 355 99 HOH HOH . C 3 HOH A 56 356 62 HOH HOH . C 3 HOH A 57 357 29 HOH HOH . C 3 HOH A 58 358 5 HOH HOH . C 3 HOH A 59 359 97 HOH HOH . C 3 HOH A 60 360 95 HOH HOH . C 3 HOH A 61 361 66 HOH HOH . C 3 HOH A 62 362 82 HOH HOH . C 3 HOH A 63 363 111 HOH HOH . C 3 HOH A 64 364 78 HOH HOH . C 3 HOH A 65 365 112 HOH HOH . C 3 HOH A 66 366 107 HOH HOH . C 3 HOH A 67 367 57 HOH HOH . C 3 HOH A 68 368 41 HOH HOH . C 3 HOH A 69 369 19 HOH HOH . C 3 HOH A 70 370 83 HOH HOH . C 3 HOH A 71 371 64 HOH HOH . C 3 HOH A 72 372 51 HOH HOH . C 3 HOH A 73 373 119 HOH HOH . C 3 HOH A 74 374 24 HOH HOH . C 3 HOH A 75 375 23 HOH HOH . C 3 HOH A 76 376 6 HOH HOH . C 3 HOH A 77 377 113 HOH HOH . C 3 HOH A 78 378 120 HOH HOH . C 3 HOH A 79 379 49 HOH HOH . C 3 HOH A 80 380 45 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 63 HOH HOH . C 3 HOH A 83 383 13 HOH HOH . C 3 HOH A 84 384 118 HOH HOH . C 3 HOH A 85 385 52 HOH HOH . C 3 HOH A 86 386 109 HOH HOH . C 3 HOH A 87 387 53 HOH HOH . C 3 HOH A 88 388 124 HOH HOH . C 3 HOH A 89 389 76 HOH HOH . C 3 HOH A 90 390 123 HOH HOH . C 3 HOH A 91 391 85 HOH HOH . C 3 HOH A 92 392 34 HOH HOH . C 3 HOH A 93 393 26 HOH HOH . C 3 HOH A 94 394 102 HOH HOH . C 3 HOH A 95 395 106 HOH HOH . C 3 HOH A 96 396 114 HOH HOH . C 3 HOH A 97 397 71 HOH HOH . C 3 HOH A 98 398 86 HOH HOH . C 3 HOH A 99 399 92 HOH HOH . C 3 HOH A 100 400 94 HOH HOH . C 3 HOH A 101 401 20 HOH HOH . C 3 HOH A 102 402 101 HOH HOH . C 3 HOH A 103 403 90 HOH HOH . C 3 HOH A 104 404 125 HOH HOH . C 3 HOH A 105 405 110 HOH HOH . C 3 HOH A 106 406 93 HOH HOH . C 3 HOH A 107 407 74 HOH HOH . C 3 HOH A 108 408 108 HOH HOH . C 3 HOH A 109 409 121 HOH HOH . C 3 HOH A 110 410 80 HOH HOH . C 3 HOH A 111 411 75 HOH HOH . C 3 HOH A 112 412 126 HOH HOH . C 3 HOH A 113 413 84 HOH HOH . C 3 HOH A 114 414 39 HOH HOH . C 3 HOH A 115 415 100 HOH HOH . C 3 HOH A 116 416 88 HOH HOH . C 3 HOH A 117 417 115 HOH HOH . C 3 HOH A 118 418 103 HOH HOH . C 3 HOH A 119 419 105 HOH HOH . C 3 HOH A 120 420 35 HOH HOH . C 3 HOH A 121 421 27 HOH HOH . C 3 HOH A 122 422 96 HOH HOH . C 3 HOH A 123 423 117 HOH HOH . C 3 HOH A 124 424 59 HOH HOH . C 3 HOH A 125 425 31 HOH HOH . C 3 HOH A 126 426 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 3.714 14.707 -8.534 1 16.08 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . B 2 4.523 13.099 -5.594 1 14.96 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . B 2 6.435 13.222 -10.037 1 17.55 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . B 2 2.719 15.959 -11.534 1 19 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . B 2 0.841 15.919 -7.09 1 15.98 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . B 2 5.147 13.337 -7.96 1 15.11 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . B 2 5.387 12.99 -6.648 1 14.77 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . B 2 6.716 12.444 -6.549 1 14.29 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . B 2 7.269 12.462 -7.769 1 13.67 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . B 2 6.293 13.027 -8.681 1 14.55 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . B 2 8.696 11.97 -8.132 1 17.1 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . B 2 7.343 11.957 -5.222 1 15.03 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . B 2 7.992 13.171 -4.533 1 15.12 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . B 2 6.994 14.102 -3.868 1 15.32 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . B 2 6.802 15.262 -4.329 1 15.01 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . B 2 6.397 13.704 -2.841 1 16.66 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . B 2 4.421 14.617 -10.414 1 15.4 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . B 2 5.558 13.923 -10.835 1 16.9 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . B 2 5.663 14.05 -12.274 1 17.34 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . B 2 4.637 14.811 -12.699 1 16.94 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . B 2 3.85 15.174 -11.535 1 17.03 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . B 2 6.824 13.459 -13.112 1 16.12 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . B 2 4.322 15.269 -14.147 1 18.41 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . B 2 4.219 14.107 -15.152 1 19.88 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . B 2 2.068 15.712 -9.19 1 16.36 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . B 2 1.926 16.232 -10.451 1 15.37 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . B 2 0.714 17.027 -10.498 1 15.96 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . B 2 0.22 17.105 -9.237 1 15.84 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . B 2 1.044 16.22 -8.418 1 16.02 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . B 2 0.366 17.845 -11.767 1 17.49 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . B 2 -0.988 17.927 -8.661 1 13.89 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . B 2 -2.147 18.188 -9.643 1 19.44 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . B 2 2.833 14.523 -6.652 1 14.75 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . B 2 1.62 15.111 -6.294 1 15.82 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . B 2 1.316 14.764 -4.923 1 15.64 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . B 2 2.462 13.876 -4.453 1 14.6 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . B 2 3.341 13.781 -5.589 1 16.62 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . B 2 0.096 15.185 -4.077 1 17.75 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . B 2 2.614 13.246 -3.056 1 14.27 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . B 2 2.174 11.787 -3.084 1 15.47 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . B 2 2.249 11.188 -1.701 1 20.15 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . B 2 2.343 11.948 -0.702 1 17.38 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . B 2 2.205 9.929 -1.599 1 16.29 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #