data_7EBH # _model_server_result.job_id cTCBfJ5BWVTJ6JvaHFSAbw _model_server_result.datetime_utc '2024-11-22 17:57:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ebh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7EBH # _exptl.entry_id 7EBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EBH _cell.length_a 109.347 _cell.length_b 109.347 _cell.length_c 84.167 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 54.6735 94.69728 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 7EBH _atom_sites.fract_transf_matrix[1][1] 0.009145 _atom_sites.fract_transf_matrix[1][2] 0.00528 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 1000 CL CL . C 3 ACT A 1 502 2000 ACT ACT . D 3 ACT A 1 503 2001 ACT ACT . E 4 DMS A 1 504 2100 DMS DMS . F 4 DMS A 1 505 2101 DMS DMS . G 5 J0F A 1 506 5000 J0F MOL . H 6 HOH A 1 601 71 HOH HOH . H 6 HOH A 2 602 61 HOH HOH . H 6 HOH A 3 603 69 HOH HOH . H 6 HOH A 4 604 67 HOH HOH . H 6 HOH A 5 605 51 HOH HOH . H 6 HOH A 6 606 53 HOH HOH . H 6 HOH A 7 607 26 HOH HOH . H 6 HOH A 8 608 31 HOH HOH . H 6 HOH A 9 609 13 HOH HOH . H 6 HOH A 10 610 7 HOH HOH . H 6 HOH A 11 611 49 HOH HOH . H 6 HOH A 12 612 37 HOH HOH . H 6 HOH A 13 613 74 HOH HOH . H 6 HOH A 14 614 3 HOH HOH . H 6 HOH A 15 615 32 HOH HOH . H 6 HOH A 16 616 35 HOH HOH . H 6 HOH A 17 617 43 HOH HOH . H 6 HOH A 18 618 21 HOH HOH . H 6 HOH A 19 619 4 HOH HOH . H 6 HOH A 20 620 39 HOH HOH . H 6 HOH A 21 621 19 HOH HOH . H 6 HOH A 22 622 48 HOH HOH . H 6 HOH A 23 623 55 HOH HOH . H 6 HOH A 24 624 16 HOH HOH . H 6 HOH A 25 625 66 HOH HOH . H 6 HOH A 26 626 12 HOH HOH . H 6 HOH A 27 627 5 HOH HOH . H 6 HOH A 28 628 20 HOH HOH . H 6 HOH A 29 629 28 HOH HOH . H 6 HOH A 30 630 10 HOH HOH . H 6 HOH A 31 631 8 HOH HOH . H 6 HOH A 32 632 40 HOH HOH . H 6 HOH A 33 633 33 HOH HOH . H 6 HOH A 34 634 9 HOH HOH . H 6 HOH A 35 635 36 HOH HOH . H 6 HOH A 36 636 23 HOH HOH . H 6 HOH A 37 637 42 HOH HOH . H 6 HOH A 38 638 6 HOH HOH . H 6 HOH A 39 639 27 HOH HOH . H 6 HOH A 40 640 18 HOH HOH . H 6 HOH A 41 641 52 HOH HOH . H 6 HOH A 42 642 57 HOH HOH . H 6 HOH A 43 643 17 HOH HOH . H 6 HOH A 44 644 58 HOH HOH . H 6 HOH A 45 645 14 HOH HOH . H 6 HOH A 46 646 1 HOH HOH . H 6 HOH A 47 647 11 HOH HOH . H 6 HOH A 48 648 63 HOH HOH . H 6 HOH A 49 649 15 HOH HOH . H 6 HOH A 50 650 64 HOH HOH . H 6 HOH A 51 651 87 HOH HOH . H 6 HOH A 52 652 60 HOH HOH . H 6 HOH A 53 653 88 HOH HOH . H 6 HOH A 54 654 76 HOH HOH . H 6 HOH A 55 655 54 HOH HOH . H 6 HOH A 56 656 72 HOH HOH . H 6 HOH A 57 657 50 HOH HOH . H 6 HOH A 58 658 91 HOH HOH . H 6 HOH A 59 659 34 HOH HOH . H 6 HOH A 60 660 24 HOH HOH . H 6 HOH A 61 661 59 HOH HOH . H 6 HOH A 62 662 62 HOH HOH . H 6 HOH A 63 663 81 HOH HOH . H 6 HOH A 64 664 78 HOH HOH . H 6 HOH A 65 665 83 HOH HOH . H 6 HOH A 66 666 25 HOH HOH . H 6 HOH A 67 667 38 HOH HOH . H 6 HOH A 68 668 82 HOH HOH . H 6 HOH A 69 669 65 HOH HOH . H 6 HOH A 70 670 45 HOH HOH . H 6 HOH A 71 671 30 HOH HOH . H 6 HOH A 72 672 29 HOH HOH . H 6 HOH A 73 673 75 HOH HOH . H 6 HOH A 74 674 85 HOH HOH . H 6 HOH A 75 675 22 HOH HOH . H 6 HOH A 76 676 89 HOH HOH . H 6 HOH A 77 677 79 HOH HOH . H 6 HOH A 78 678 56 HOH HOH . H 6 HOH A 79 679 80 HOH HOH . H 6 HOH A 80 680 90 HOH HOH . H 6 HOH A 81 681 70 HOH HOH . H 6 HOH A 82 682 47 HOH HOH . H 6 HOH A 83 683 77 HOH HOH . H 6 HOH A 84 684 84 HOH HOH . H 6 HOH A 85 685 41 HOH HOH . H 6 HOH A 86 686 86 HOH HOH . H 6 HOH A 87 687 44 HOH HOH . H 6 HOH A 88 688 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 4 43.46 33.272 85.452 1 83.86 ? S DMS 505 A 1 HETATM 2 O O DMS . . . F 4 44.648 33.069 86.335 1 76.35 ? O DMS 505 A 1 HETATM 3 C C1 DMS . . . F 4 43.109 35.045 85.307 1 56.18 ? C1 DMS 505 A 1 HETATM 4 C C2 DMS . . . F 4 41.957 32.719 86.304 1 65.51 ? C2 DMS 505 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #