data_7EC0 # _model_server_result.job_id qeKS0ctvhgebXi1veTEOng _model_server_result.datetime_utc '2024-10-20 19:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ec0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7EC0 # _exptl.entry_id 7EC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.5 _cell.angle_gamma 90 _cell.entry_id 7EC0 _cell.length_a 82.459 _cell.length_b 101.203 _cell.length_c 103.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,Q,R 1 1 C,F,K,L,S,V 2 1 D,E,M,N,O,P,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 320 n n N HN1 SAH sing 321 n n N HN2 SAH sing 322 n n CA CB SAH sing 323 n n CA C SAH sing 324 n n CA HA SAH sing 325 n n CB CG SAH sing 326 n n CB HB1 SAH sing 327 n n CB HB2 SAH sing 328 n n CG SD SAH sing 329 n n CG HG1 SAH sing 330 n n CG HG2 SAH sing 331 n n SD C5' SAH sing 332 n n C O SAH doub 333 n n C OXT SAH sing 334 n n OXT HXT SAH sing 335 n n C5' C4' SAH sing 336 n n C5' "H5'1" SAH sing 337 n n C5' "H5'2" SAH sing 338 n n C4' O4' SAH sing 339 n n C4' C3' SAH sing 340 n n C4' H4' SAH sing 341 n n O4' C1' SAH sing 342 n n C3' O3' SAH sing 343 n n C3' C2' SAH sing 344 n n C3' H3' SAH sing 345 n n O3' HO3' SAH sing 346 n n C2' O2' SAH sing 347 n n C2' C1' SAH sing 348 n n C2' H2' SAH sing 349 n n O2' HO2' SAH sing 350 n n C1' N9 SAH sing 351 n n C1' H1' SAH sing 352 n n N9 C8 SAH sing 353 n y N9 C4 SAH sing 354 n y C8 N7 SAH doub 355 n y C8 H8 SAH sing 356 n n N7 C5 SAH sing 357 n y C5 C6 SAH sing 358 n y C5 C4 SAH doub 359 n y C6 N6 SAH sing 360 n n C6 N1 SAH doub 361 n y N6 HN61 SAH sing 362 n n N6 HN62 SAH sing 363 n n N1 C2 SAH sing 364 n y C2 N3 SAH doub 365 n y C2 H2 SAH sing 366 n n N3 C4 SAH sing 367 n y # _atom_sites.entry_id 7EC0 _atom_sites.fract_transf_matrix[1][1] 0.012127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000742 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SAH A 1 301 1 SAH SAH . H 3 J10 A 1 302 1 J10 MeF . I 2 SAH D 1 301 1 SAH SAH . J 3 J10 D 1 302 1 J10 MeF . K 2 SAH G 1 301 1 SAH SAH . L 3 J10 G 1 302 1 J10 MeF . M 2 SAH J 1 301 1 SAH SAH . N 3 J10 J 1 302 1 J10 MeF . O 2 SAH M 1 301 1 SAH SAH . P 3 J10 M 1 302 1 J10 MeF . Q 4 HOH A 1 401 2 HOH HOH . Q 4 HOH A 2 402 12 HOH HOH . Q 4 HOH A 3 403 1 HOH HOH . Q 4 HOH A 4 404 13 HOH HOH . R 4 HOH D 1 401 3 HOH HOH . R 4 HOH D 2 402 5 HOH HOH . R 4 HOH D 3 403 7 HOH HOH . R 4 HOH D 4 404 6 HOH HOH . R 4 HOH D 5 405 4 HOH HOH . R 4 HOH D 6 406 9 HOH HOH . S 4 HOH G 1 401 15 HOH HOH . S 4 HOH G 2 402 11 HOH HOH . S 4 HOH G 3 403 8 HOH HOH . S 4 HOH G 4 404 10 HOH HOH . S 4 HOH G 5 405 14 HOH HOH . T 4 HOH J 1 401 16 HOH HOH . U 4 HOH M 1 401 17 HOH HOH . U 4 HOH M 2 402 18 HOH HOH . U 4 HOH M 3 403 20 HOH HOH . U 4 HOH M 4 404 19 HOH HOH . V 4 HOH P 1 301 23 HOH HOH . V 4 HOH P 2 302 24 HOH HOH . V 4 HOH P 3 303 22 HOH HOH . V 4 HOH P 4 304 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 2 31.532 3.278 46.183 0.5 60.91 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . G 2 32.307 2.013 46.147 0.5 60.98 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . G 2 32.215 1.284 47.487 0.5 60.81 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . G 2 33.511 1.238 48.24 0.5 60.63 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . G 2 33.544 -0.1 49.43 0.5 59.65 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . G 2 31.73 1.109 45.059 0.5 61.56 ? C SAH 301 A 1 HETATM 7 O O SAH . . . G 2 31.136 1.661 44.13 0.5 62.65 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . G 2 31.891 -0.112 45.195 0.5 61.86 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . G 2 32.779 0.627 50.89 0.5 60.13 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . G 2 33.505 1.833 51.427 0.5 60.11 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . G 2 32.805 2.332 52.585 0.5 59.61 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . G 2 34.944 1.575 51.88 0.5 60.18 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . G 2 35.858 2.446 51.23 0.5 60.9 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . G 2 34.911 1.855 53.384 0.5 59.92 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . G 2 36.108 2.453 53.819 0.5 60.76 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . G 2 33.758 2.84 53.475 0.5 59.36 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . G 2 33.172 2.949 54.803 0.5 58.75 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . G 2 33.154 1.987 55.778 0.5 58.32 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . G 2 32.59 2.384 56.888 0.5 58.07 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . G 2 32.22 3.696 56.635 0.5 57.87 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . G 2 31.583 4.673 57.422 0.5 58.06 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . G 2 31.189 4.475 58.675 0.5 56.88 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . G 2 31.375 5.886 56.865 0.5 57.34 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . G 2 31.784 6.091 55.611 0.5 58.05 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . G 2 32.388 5.254 54.779 0.5 58.37 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . G 2 32.581 4.059 55.354 0.5 58.27 ? C4 SAH 301 A 1 HETATM 27 H HN1 SAH . . . G 2 31.116 3.398 47.084 0.5 60.91 ? HN1 SAH 301 A 1 HETATM 28 H HN2 SAH . . . G 2 32.118 4.017 46.005 0.5 60.91 ? HN2 SAH 301 A 1 HETATM 29 H HA SAH . . . G 2 33.247 2.228 45.946 0.5 60.98 ? HA SAH 301 A 1 HETATM 30 H HB1 SAH . . . G 2 31.932 0.36 47.323 0.5 60.81 ? HB1 SAH 301 A 1 HETATM 31 H HB2 SAH . . . G 2 31.559 1.745 48.05 0.5 60.81 ? HB2 SAH 301 A 1 HETATM 32 H HG1 SAH . . . G 2 33.644 2.091 48.706 0.5 60.63 ? HG1 SAH 301 A 1 HETATM 33 H HG2 SAH . . . G 2 34.25 1.127 47.604 0.5 60.63 ? HG2 SAH 301 A 1 HETATM 34 H "H5'1" SAH . . . G 2 32.753 -0.032 51.58 0.5 60.13 ? "H5'1" SAH 301 A 1 HETATM 35 H "H5'2" SAH . . . G 2 31.891 0.894 50.667 0.5 60.13 ? "H5'2" SAH 301 A 1 HETATM 36 H H4' SAH . . . G 2 33.522 2.535 50.731 0.5 60.11 ? H4' SAH 301 A 1 HETATM 37 H H3' SAH . . . G 2 35.196 0.629 51.72 0.5 60.18 ? H3' SAH 301 A 1 HETATM 38 H HO3' SAH . . . G 2 35.651 3.248 51.418 0 60.9 ? HO3' SAH 301 A 1 HETATM 39 H H2' SAH . . . G 2 34.704 1.025 53.89 0.5 59.92 ? H2' SAH 301 A 1 HETATM 40 H HO2' SAH . . . G 2 36.06 2.596 54.655 0 60.76 ? HO2' SAH 301 A 1 HETATM 41 H H1' SAH . . . G 2 34.069 3.726 53.181 0.5 59.36 ? H1' SAH 301 A 1 HETATM 42 H H8 SAH . . . G 2 33.513 1.124 55.66 0.5 58.32 ? H8 SAH 301 A 1 HETATM 43 H HN61 SAH . . . G 2 30.804 5.127 59.118 0 56.88 ? HN61 SAH 301 A 1 HETATM 44 H HN62 SAH . . . G 2 31.316 3.694 59.052 0 56.88 ? HN62 SAH 301 A 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 121 _model_server_stats.create_model_time_ms 190 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #