data_7EC0 # _model_server_result.job_id od1r-p_WSrmK-38zHy_w7w _model_server_result.datetime_utc '2024-10-20 19:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ec0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 7EC0 # _exptl.entry_id 7EC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.5 _cell.angle_gamma 90 _cell.entry_id 7EC0 _cell.length_a 82.459 _cell.length_b 101.203 _cell.length_c 103.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,Q,R 1 1 C,F,K,L,S,V 2 1 D,E,M,N,O,P,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 320 n n N HN1 SAH sing 321 n n N HN2 SAH sing 322 n n CA CB SAH sing 323 n n CA C SAH sing 324 n n CA HA SAH sing 325 n n CB CG SAH sing 326 n n CB HB1 SAH sing 327 n n CB HB2 SAH sing 328 n n CG SD SAH sing 329 n n CG HG1 SAH sing 330 n n CG HG2 SAH sing 331 n n SD C5' SAH sing 332 n n C O SAH doub 333 n n C OXT SAH sing 334 n n OXT HXT SAH sing 335 n n C5' C4' SAH sing 336 n n C5' "H5'1" SAH sing 337 n n C5' "H5'2" SAH sing 338 n n C4' O4' SAH sing 339 n n C4' C3' SAH sing 340 n n C4' H4' SAH sing 341 n n O4' C1' SAH sing 342 n n C3' O3' SAH sing 343 n n C3' C2' SAH sing 344 n n C3' H3' SAH sing 345 n n O3' HO3' SAH sing 346 n n C2' O2' SAH sing 347 n n C2' C1' SAH sing 348 n n C2' H2' SAH sing 349 n n O2' HO2' SAH sing 350 n n C1' N9 SAH sing 351 n n C1' H1' SAH sing 352 n n N9 C8 SAH sing 353 n y N9 C4 SAH sing 354 n y C8 N7 SAH doub 355 n y C8 H8 SAH sing 356 n n N7 C5 SAH sing 357 n y C5 C6 SAH sing 358 n y C5 C4 SAH doub 359 n y C6 N6 SAH sing 360 n n C6 N1 SAH doub 361 n y N6 HN61 SAH sing 362 n n N6 HN62 SAH sing 363 n n N1 C2 SAH sing 364 n y C2 N3 SAH doub 365 n y C2 H2 SAH sing 366 n n N3 C4 SAH sing 367 n y # _atom_sites.entry_id 7EC0 _atom_sites.fract_transf_matrix[1][1] 0.012127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000742 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SAH A 1 301 1 SAH SAH . H 3 J10 A 1 302 1 J10 MeF . I 2 SAH D 1 301 1 SAH SAH . J 3 J10 D 1 302 1 J10 MeF . K 2 SAH G 1 301 1 SAH SAH . L 3 J10 G 1 302 1 J10 MeF . M 2 SAH J 1 301 1 SAH SAH . N 3 J10 J 1 302 1 J10 MeF . O 2 SAH M 1 301 1 SAH SAH . P 3 J10 M 1 302 1 J10 MeF . Q 4 HOH A 1 401 2 HOH HOH . Q 4 HOH A 2 402 12 HOH HOH . Q 4 HOH A 3 403 1 HOH HOH . Q 4 HOH A 4 404 13 HOH HOH . R 4 HOH D 1 401 3 HOH HOH . R 4 HOH D 2 402 5 HOH HOH . R 4 HOH D 3 403 7 HOH HOH . R 4 HOH D 4 404 6 HOH HOH . R 4 HOH D 5 405 4 HOH HOH . R 4 HOH D 6 406 9 HOH HOH . S 4 HOH G 1 401 15 HOH HOH . S 4 HOH G 2 402 11 HOH HOH . S 4 HOH G 3 403 8 HOH HOH . S 4 HOH G 4 404 10 HOH HOH . S 4 HOH G 5 405 14 HOH HOH . T 4 HOH J 1 401 16 HOH HOH . U 4 HOH M 1 401 17 HOH HOH . U 4 HOH M 2 402 18 HOH HOH . U 4 HOH M 3 403 20 HOH HOH . U 4 HOH M 4 404 19 HOH HOH . V 4 HOH P 1 301 23 HOH HOH . V 4 HOH P 2 302 24 HOH HOH . V 4 HOH P 3 303 22 HOH HOH . V 4 HOH P 4 304 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 2 -0.046 -23.427 44.851 1 66.27 ? N SAH 301 D 1 HETATM 2 C CA SAH . . . I 2 0.601 -24.221 45.926 1 66.44 ? CA SAH 301 D 1 HETATM 3 C CB SAH . . . I 2 1.494 -25.323 45.351 1 64.98 ? CB SAH 301 D 1 HETATM 4 C CG SAH . . . I 2 2.723 -24.828 44.645 1 63.41 ? CG SAH 301 D 1 HETATM 5 S SD SAH . . . I 2 3.597 -26.149 43.819 1 62.21 ? SD SAH 301 D 1 HETATM 6 C C SAH . . . I 2 1.422 -23.29 46.816 1 66.77 ? C SAH 301 D 1 HETATM 7 O O SAH . . . I 2 1.244 -22.095 46.679 1 65.84 ? O SAH 301 D 1 HETATM 8 O OXT SAH . . . I 2 2.185 -23.804 47.616 1 69.04 ? OXT SAH 301 D 1 HETATM 9 C C5' SAH . . . I 2 3.38 -25.772 42.079 1 61.36 ? C5' SAH 301 D 1 HETATM 10 C C4' SAH . . . I 2 2.252 -26.542 41.462 1 61.31 ? C4' SAH 301 D 1 HETATM 11 O O4' SAH . . . I 2 2.018 -26.052 40.13 1 60.79 ? O4' SAH 301 D 1 HETATM 12 C C3' SAH . . . I 2 2.501 -28.04 41.327 1 61.35 ? C3' SAH 301 D 1 HETATM 13 O O3' SAH . . . I 2 1.36 -28.764 41.747 1 62.48 ? O3' SAH 301 D 1 HETATM 14 C C2' SAH . . . I 2 2.662 -28.233 39.824 1 61.53 ? C2' SAH 301 D 1 HETATM 15 O O2' SAH . . . I 2 2.264 -29.518 39.414 1 61.73 ? O2' SAH 301 D 1 HETATM 16 C C1' SAH . . . I 2 1.739 -27.147 39.306 1 60.81 ? C1' SAH 301 D 1 HETATM 17 N N9 SAH . . . I 2 2.016 -26.785 37.928 1 60.92 ? N9 SAH 301 D 1 HETATM 18 C C8 SAH . . . I 2 3.216 -26.922 37.29 1 61.58 ? C8 SAH 301 D 1 HETATM 19 N N7 SAH . . . I 2 3.187 -26.546 36.044 1 61.91 ? N7 SAH 301 D 1 HETATM 20 C C5 SAH . . . I 2 1.885 -26.134 35.844 1 61.03 ? C5 SAH 301 D 1 HETATM 21 C C6 SAH . . . I 2 1.223 -25.624 34.719 1 61.27 ? C6 SAH 301 D 1 HETATM 22 N N6 SAH . . . I 2 1.803 -25.442 33.541 1 59.77 ? N6 SAH 301 D 1 HETATM 23 N N1 SAH . . . I 2 -0.082 -25.315 34.852 1 61.05 ? N1 SAH 301 D 1 HETATM 24 C C2 SAH . . . I 2 -0.666 -25.503 36.035 1 60.47 ? C2 SAH 301 D 1 HETATM 25 N N3 SAH . . . I 2 -0.146 -25.981 37.154 1 61.88 ? N3 SAH 301 D 1 HETATM 26 C C4 SAH . . . I 2 1.15 -26.279 36.996 1 60.87 ? C4 SAH 301 D 1 HETATM 27 H HN1 SAH . . . I 2 0.258 -23.752 43.956 1 66.27 ? HN1 SAH 301 D 1 HETATM 28 H HN2 SAH . . . I 2 -0.999 -23.52 44.914 1 66.27 ? HN2 SAH 301 D 1 HETATM 29 H HA SAH . . . I 2 -0.103 -24.66 46.457 1 66.44 ? HA SAH 301 D 1 HETATM 30 H HB1 SAH . . . I 2 0.974 -25.841 44.702 1 64.98 ? HB1 SAH 301 D 1 HETATM 31 H HB2 SAH . . . I 2 1.792 -25.9 46.085 1 64.98 ? HB2 SAH 301 D 1 HETATM 32 H HG1 SAH . . . I 2 3.32 -24.402 45.296 1 63.41 ? HG1 SAH 301 D 1 HETATM 33 H HG2 SAH . . . I 2 2.465 -24.148 43.987 1 63.41 ? HG2 SAH 301 D 1 HETATM 34 H "H5'1" SAH . . . I 2 4.187 -25.989 41.618 1 61.36 ? "H5'1" SAH 301 D 1 HETATM 35 H "H5'2" SAH . . . I 2 3.199 -24.84 41.99 1 61.36 ? "H5'2" SAH 301 D 1 HETATM 36 H H4' SAH . . . I 2 1.436 -26.409 42.005 1 61.31 ? H4' SAH 301 D 1 HETATM 37 H H3' SAH . . . I 2 3.336 -28.299 41.795 1 61.35 ? H3' SAH 301 D 1 HETATM 38 H HO3' SAH . . . I 2 0.701 -28.541 41.26 0 62.48 ? HO3' SAH 301 D 1 HETATM 39 H H2' SAH . . . I 2 3.602 -28.063 39.548 1 61.53 ? H2' SAH 301 D 1 HETATM 40 H HO2' SAH . . . I 2 2.368 -29.586 38.574 0 61.73 ? HO2' SAH 301 D 1 HETATM 41 H H1' SAH . . . I 2 0.807 -27.449 39.396 1 60.81 ? H1' SAH 301 D 1 HETATM 42 H H8 SAH . . . I 2 3.989 -27.256 37.712 1 61.58 ? H8 SAH 301 D 1 HETATM 43 H HN61 SAH . . . I 2 1.335 -25.126 32.87 0 59.77 ? HN61 SAH 301 D 1 HETATM 44 H HN62 SAH . . . I 2 2.652 -25.639 33.439 0 59.77 ? HN62 SAH 301 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #