data_7EC0
#
_model_server_result.job_id            uxLOql3PYhMS8g65zWXmcQ 
_model_server_result.datetime_utc      '2024-10-20 19:06:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ec0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    7EC0 
#
_exptl.entry_id    7EC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.5 
_cell.angle_gamma         90 
_cell.entry_id            7EC0 
_cell.length_a            82.459 
_cell.length_b            101.203 
_cell.length_c            103.363 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,Q,R 1 1 
C,F,K,L,S,V 2 1 
D,E,M,N,O,P,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 320 n n 
N HN1 SAH sing 321 n n 
N HN2 SAH sing 322 n n 
CA CB SAH sing 323 n n 
CA C SAH sing 324 n n 
CA HA SAH sing 325 n n 
CB CG SAH sing 326 n n 
CB HB1 SAH sing 327 n n 
CB HB2 SAH sing 328 n n 
CG SD SAH sing 329 n n 
CG HG1 SAH sing 330 n n 
CG HG2 SAH sing 331 n n 
SD C5' SAH sing 332 n n 
C O SAH doub 333 n n 
C OXT SAH sing 334 n n 
OXT HXT SAH sing 335 n n 
C5' C4' SAH sing 336 n n 
C5' "H5'1" SAH sing 337 n n 
C5' "H5'2" SAH sing 338 n n 
C4' O4' SAH sing 339 n n 
C4' C3' SAH sing 340 n n 
C4' H4' SAH sing 341 n n 
O4' C1' SAH sing 342 n n 
C3' O3' SAH sing 343 n n 
C3' C2' SAH sing 344 n n 
C3' H3' SAH sing 345 n n 
O3' HO3' SAH sing 346 n n 
C2' O2' SAH sing 347 n n 
C2' C1' SAH sing 348 n n 
C2' H2' SAH sing 349 n n 
O2' HO2' SAH sing 350 n n 
C1' N9 SAH sing 351 n n 
C1' H1' SAH sing 352 n n 
N9 C8 SAH sing 353 n y 
N9 C4 SAH sing 354 n y 
C8 N7 SAH doub 355 n y 
C8 H8 SAH sing 356 n n 
N7 C5 SAH sing 357 n y 
C5 C6 SAH sing 358 n y 
C5 C4 SAH doub 359 n y 
C6 N6 SAH sing 360 n n 
C6 N1 SAH doub 361 n y 
N6 HN61 SAH sing 362 n n 
N6 HN62 SAH sing 363 n n 
N1 C2 SAH sing 364 n y 
C2 N3 SAH doub 365 n y 
C2 H2 SAH sing 366 n n 
N3 C4 SAH sing 367 n y 
#
_atom_sites.entry_id                     7EC0 
_atom_sites.fract_transf_matrix[1][1]    0.012127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000742 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAH A 1 301 1 SAH SAH . 
H 3 J10 A 1 302 1 J10 MeF . 
I 2 SAH D 1 301 1 SAH SAH . 
J 3 J10 D 1 302 1 J10 MeF . 
K 2 SAH G 1 301 1 SAH SAH . 
L 3 J10 G 1 302 1 J10 MeF . 
M 2 SAH J 1 301 1 SAH SAH . 
N 3 J10 J 1 302 1 J10 MeF . 
O 2 SAH M 1 301 1 SAH SAH . 
P 3 J10 M 1 302 1 J10 MeF . 
Q 4 HOH A 1 401 2 HOH HOH . 
Q 4 HOH A 2 402 12 HOH HOH . 
Q 4 HOH A 3 403 1 HOH HOH . 
Q 4 HOH A 4 404 13 HOH HOH . 
R 4 HOH D 1 401 3 HOH HOH . 
R 4 HOH D 2 402 5 HOH HOH . 
R 4 HOH D 3 403 7 HOH HOH . 
R 4 HOH D 4 404 6 HOH HOH . 
R 4 HOH D 5 405 4 HOH HOH . 
R 4 HOH D 6 406 9 HOH HOH . 
S 4 HOH G 1 401 15 HOH HOH . 
S 4 HOH G 2 402 11 HOH HOH . 
S 4 HOH G 3 403 8 HOH HOH . 
S 4 HOH G 4 404 10 HOH HOH . 
S 4 HOH G 5 405 14 HOH HOH . 
T 4 HOH J 1 401 16 HOH HOH . 
U 4 HOH M 1 401 17 HOH HOH . 
U 4 HOH M 2 402 18 HOH HOH . 
U 4 HOH M 3 403 20 HOH HOH . 
U 4 HOH M 4 404 19 HOH HOH . 
V 4 HOH P 1 301 23 HOH HOH . 
V 4 HOH P 2 302 24 HOH HOH . 
V 4 HOH P 3 303 22 HOH HOH . 
V 4 HOH P 4 304 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . K 2 -5.847 -42.861 21.324 1 63.56 ? N SAH 301 G 1 
HETATM 2 C CA SAH . . . K 2 -4.454 -43.362 21.248 1 63.34 ? CA SAH 301 G 1 
HETATM 3 C CB SAH . . . K 2 -3.786 -43.373 22.626 1 61.98 ? CB SAH 301 G 1 
HETATM 4 C CG SAH . . . K 2 -4.004 -44.629 23.445 1 59.79 ? CG SAH 301 G 1 
HETATM 5 S SD SAH . . . K 2 -2.922 -44.749 24.862 1 55.13 ? SD SAH 301 G 1 
HETATM 6 C C SAH . . . K 2 -4.452 -44.761 20.635 1 66.31 ? C SAH 301 G 1 
HETATM 7 O O SAH . . . K 2 -5.494 -45.159 20.149 1 67.51 ? O SAH 301 G 1 
HETATM 8 O OXT SAH . . . K 2 -3.402 -45.382 20.674 1 71.25 ? OXT SAH 301 G 1 
HETATM 9 C C5' SAH . . . K 2 -4.011 -44.334 26.22 1 54.46 ? C5' SAH 301 G 1 
HETATM 10 C C4' SAH . . . K 2 -3.932 -42.889 26.612 1 53.52 ? C4' SAH 301 G 1 
HETATM 11 O O4' SAH . . . K 2 -4.936 -42.619 27.603 1 52.72 ? O4' SAH 301 G 1 
HETATM 12 C C3' SAH . . . K 2 -2.613 -42.453 27.239 1 53.46 ? C3' SAH 301 G 1 
HETATM 13 O O3' SAH . . . K 2 -2.122 -41.299 26.584 1 54.03 ? O3' SAH 301 G 1 
HETATM 14 C C2' SAH . . . K 2 -3.003 -42.041 28.655 1 52.88 ? C2' SAH 301 G 1 
HETATM 15 O O2' SAH . . . K 2 -2.292 -40.911 29.084 1 53.84 ? O2' SAH 301 G 1 
HETATM 16 C C1' SAH . . . K 2 -4.435 -41.615 28.433 1 52.53 ? C1' SAH 301 G 1 
HETATM 17 N N9 SAH . . . K 2 -5.206 -41.552 29.659 1 52.46 ? N9 SAH 301 G 1 
HETATM 18 C C8 SAH . . . K 2 -5.05 -42.359 30.747 1 52.65 ? C8 SAH 301 G 1 
HETATM 19 N N7 SAH . . . K 2 -5.858 -42.067 31.725 1 53.55 ? N7 SAH 301 G 1 
HETATM 20 C C5 SAH . . . K 2 -6.597 -40.999 31.258 1 53.03 ? C5 SAH 301 G 1 
HETATM 21 C C6 SAH . . . K 2 -7.626 -40.24 31.837 1 53.59 ? C6 SAH 301 G 1 
HETATM 22 N N6 SAH . . . K 2 -8.096 -40.431 33.061 1 52.46 ? N6 SAH 301 G 1 
HETATM 23 N N1 SAH . . . K 2 -8.151 -39.247 31.098 1 52.9 ? N1 SAH 301 G 1 
HETATM 24 C C2 SAH . . . K 2 -7.666 -39.046 29.875 1 53.92 ? C2 SAH 301 G 1 
HETATM 25 N N3 SAH . . . K 2 -6.701 -39.685 29.235 1 53.55 ? N3 SAH 301 G 1 
HETATM 26 C C4 SAH . . . K 2 -6.2 -40.668 29.986 1 52.41 ? C4 SAH 301 G 1 
HETATM 27 H HN1 SAH . . . K 2 -6.09 -42.67 22.275 1 63.56 ? HN1 SAH 301 G 1 
HETATM 28 H HN2 SAH . . . K 2 -5.925 -42.054 20.81 1 63.56 ? HN2 SAH 301 G 1 
HETATM 29 H HA SAH . . . K 2 -3.931 -42.747 20.683 1 63.34 ? HA SAH 301 G 1 
HETATM 30 H HB1 SAH . . . K 2 -4.14 -42.626 23.152 1 61.98 ? HB1 SAH 301 G 1 
HETATM 31 H HB2 SAH . . . K 2 -2.818 -43.276 22.506 1 61.98 ? HB2 SAH 301 G 1 
HETATM 32 H HG1 SAH . . . K 2 -3.861 -45.415 22.875 1 59.79 ? HG1 SAH 301 G 1 
HETATM 33 H HG2 SAH . . . K 2 -4.933 -44.653 23.758 1 59.79 ? HG2 SAH 301 G 1 
HETATM 34 H "H5'1" SAH . . . K 2 -3.772 -44.866 26.975 1 54.46 ? "H5'1" SAH 301 G 1 
HETATM 35 H "H5'2" SAH . . . K 2 -4.908 -44.529 25.96 1 54.46 ? "H5'2" SAH 301 G 1 
HETATM 36 H H4' SAH . . . K 2 -4.102 -42.329 25.814 1 53.52 ? H4' SAH 301 G 1 
HETATM 37 H H3' SAH . . . K 2 -1.975 -43.212 27.273 1 53.46 ? H3' SAH 301 G 1 
HETATM 38 H HO3' SAH . . . K 2 -2.694 -40.676 26.663 0 54.03 ? HO3' SAH 301 G 1 
HETATM 39 H H2' SAH . . . K 2 -2.955 -42.819 29.271 1 52.88 ? H2' SAH 301 G 1 
HETATM 40 H HO2' SAH . . . K 2 -2.535 -40.713 29.873 0 53.84 ? HO2' SAH 301 G 1 
HETATM 41 H H1' SAH . . . K 2 -4.443 -40.739 27.986 1 52.53 ? H1' SAH 301 G 1 
HETATM 42 H H8 SAH . . . K 2 -4.42 -43.059 30.787 1 52.65 ? H8 SAH 301 G 1 
HETATM 43 H HN61 SAH . . . K 2 -8.734 -39.914 33.367 0 52.46 ? HN61 SAH 301 G 1 
HETATM 44 H HN62 SAH . . . K 2 -7.766 -41.074 33.558 0 52.46 ? HN62 SAH 301 G 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#