data_7EC0
#
_model_server_result.job_id            -eyxodELGwfVO6VzpAiNxg 
_model_server_result.datetime_utc      '2024-10-20 19:06:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ec0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    7EC0 
#
_exptl.entry_id    7EC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.5 
_cell.angle_gamma         90 
_cell.entry_id            7EC0 
_cell.length_a            82.459 
_cell.length_b            101.203 
_cell.length_c            103.363 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,Q,R 1 1 
C,F,K,L,S,V 2 1 
D,E,M,N,O,P,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 320 n n 
N HN1 SAH sing 321 n n 
N HN2 SAH sing 322 n n 
CA CB SAH sing 323 n n 
CA C SAH sing 324 n n 
CA HA SAH sing 325 n n 
CB CG SAH sing 326 n n 
CB HB1 SAH sing 327 n n 
CB HB2 SAH sing 328 n n 
CG SD SAH sing 329 n n 
CG HG1 SAH sing 330 n n 
CG HG2 SAH sing 331 n n 
SD C5' SAH sing 332 n n 
C O SAH doub 333 n n 
C OXT SAH sing 334 n n 
OXT HXT SAH sing 335 n n 
C5' C4' SAH sing 336 n n 
C5' "H5'1" SAH sing 337 n n 
C5' "H5'2" SAH sing 338 n n 
C4' O4' SAH sing 339 n n 
C4' C3' SAH sing 340 n n 
C4' H4' SAH sing 341 n n 
O4' C1' SAH sing 342 n n 
C3' O3' SAH sing 343 n n 
C3' C2' SAH sing 344 n n 
C3' H3' SAH sing 345 n n 
O3' HO3' SAH sing 346 n n 
C2' O2' SAH sing 347 n n 
C2' C1' SAH sing 348 n n 
C2' H2' SAH sing 349 n n 
O2' HO2' SAH sing 350 n n 
C1' N9 SAH sing 351 n n 
C1' H1' SAH sing 352 n n 
N9 C8 SAH sing 353 n y 
N9 C4 SAH sing 354 n y 
C8 N7 SAH doub 355 n y 
C8 H8 SAH sing 356 n n 
N7 C5 SAH sing 357 n y 
C5 C6 SAH sing 358 n y 
C5 C4 SAH doub 359 n y 
C6 N6 SAH sing 360 n n 
C6 N1 SAH doub 361 n y 
N6 HN61 SAH sing 362 n n 
N6 HN62 SAH sing 363 n n 
N1 C2 SAH sing 364 n y 
C2 N3 SAH doub 365 n y 
C2 H2 SAH sing 366 n n 
N3 C4 SAH sing 367 n y 
#
_atom_sites.entry_id                     7EC0 
_atom_sites.fract_transf_matrix[1][1]    0.012127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000742 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAH A 1 301 1 SAH SAH . 
H 3 J10 A 1 302 1 J10 MeF . 
I 2 SAH D 1 301 1 SAH SAH . 
J 3 J10 D 1 302 1 J10 MeF . 
K 2 SAH G 1 301 1 SAH SAH . 
L 3 J10 G 1 302 1 J10 MeF . 
M 2 SAH J 1 301 1 SAH SAH . 
N 3 J10 J 1 302 1 J10 MeF . 
O 2 SAH M 1 301 1 SAH SAH . 
P 3 J10 M 1 302 1 J10 MeF . 
Q 4 HOH A 1 401 2 HOH HOH . 
Q 4 HOH A 2 402 12 HOH HOH . 
Q 4 HOH A 3 403 1 HOH HOH . 
Q 4 HOH A 4 404 13 HOH HOH . 
R 4 HOH D 1 401 3 HOH HOH . 
R 4 HOH D 2 402 5 HOH HOH . 
R 4 HOH D 3 403 7 HOH HOH . 
R 4 HOH D 4 404 6 HOH HOH . 
R 4 HOH D 5 405 4 HOH HOH . 
R 4 HOH D 6 406 9 HOH HOH . 
S 4 HOH G 1 401 15 HOH HOH . 
S 4 HOH G 2 402 11 HOH HOH . 
S 4 HOH G 3 403 8 HOH HOH . 
S 4 HOH G 4 404 10 HOH HOH . 
S 4 HOH G 5 405 14 HOH HOH . 
T 4 HOH J 1 401 16 HOH HOH . 
U 4 HOH M 1 401 17 HOH HOH . 
U 4 HOH M 2 402 18 HOH HOH . 
U 4 HOH M 3 403 20 HOH HOH . 
U 4 HOH M 4 404 19 HOH HOH . 
V 4 HOH P 1 301 23 HOH HOH . 
V 4 HOH P 2 302 24 HOH HOH . 
V 4 HOH P 3 303 22 HOH HOH . 
V 4 HOH P 4 304 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . M 2 40.753 -22.192 21.35 1 72.51 ? N SAH 301 J 1 
HETATM 2 C CA SAH . . . M 2 41.137 -21.181 22.364 1 72.8 ? CA SAH 301 J 1 
HETATM 3 C CB SAH . . . M 2 42.333 -20.36 21.882 1 71.66 ? CB SAH 301 J 1 
HETATM 4 C CG SAH . . . M 2 42.369 -20.168 20.394 1 70.11 ? CG SAH 301 J 1 
HETATM 5 S SD SAH . . . M 2 43.386 -18.785 19.936 1 67.1 ? SD SAH 301 J 1 
HETATM 6 C C SAH . . . M 2 39.951 -20.255 22.631 1 72.98 ? C SAH 301 J 1 
HETATM 7 O O SAH . . . M 2 38.832 -20.723 22.498 1 74.45 ? O SAH 301 J 1 
HETATM 8 O OXT SAH . . . M 2 40.2 -19.108 22.975 1 73.84 ? OXT SAH 301 J 1 
HETATM 9 C C5' SAH . . . M 2 44.062 -19.248 18.337 1 69.25 ? C5' SAH 301 J 1 
HETATM 10 C C4' SAH . . . M 2 45.072 -20.365 18.388 1 69.89 ? C4' SAH 301 J 1 
HETATM 11 O O4' SAH . . . M 2 45.094 -21.046 17.119 1 69.3 ? O4' SAH 301 J 1 
HETATM 12 C C3' SAH . . . M 2 46.513 -19.944 18.67 1 70.09 ? C3' SAH 301 J 1 
HETATM 13 O O3' SAH . . . M 2 47.097 -20.835 19.604 1 71.47 ? O3' SAH 301 J 1 
HETATM 14 C C2' SAH . . . M 2 47.244 -20.249 17.368 1 70.76 ? C2' SAH 301 J 1 
HETATM 15 O O2' SAH . . . M 2 48.524 -20.762 17.647 1 73.74 ? O2' SAH 301 J 1 
HETATM 16 C C1' SAH . . . M 2 46.419 -21.407 16.846 1 70.52 ? C1' SAH 301 J 1 
HETATM 17 N N9 SAH . . . M 2 46.552 -21.596 15.414 1 70.44 ? N9 SAH 301 J 1 
HETATM 18 C C8 SAH . . . M 2 46.622 -20.616 14.466 1 69.9 ? C8 SAH 301 J 1 
HETATM 19 N N7 SAH . . . M 2 46.731 -21.084 13.254 1 68.51 ? N7 SAH 301 J 1 
HETATM 20 C C5 SAH . . . M 2 46.727 -22.457 13.413 1 67.9 ? C5 SAH 301 J 1 
HETATM 21 C C6 SAH . . . M 2 46.81 -23.514 12.494 1 68.54 ? C6 SAH 301 J 1 
HETATM 22 N N6 SAH . . . M 2 46.905 -23.353 11.181 1 66.64 ? N6 SAH 301 J 1 
HETATM 23 N N1 SAH . . . M 2 46.769 -24.766 12.99 1 69.7 ? N1 SAH 301 J 1 
HETATM 24 C C2 SAH . . . M 2 46.673 -24.927 14.311 1 69.32 ? C2 SAH 301 J 1 
HETATM 25 N N3 SAH . . . M 2 46.594 -24.013 15.264 1 68.43 ? N3 SAH 301 J 1 
HETATM 26 C C4 SAH . . . M 2 46.622 -22.784 14.742 1 68.55 ? C4 SAH 301 J 1 
HETATM 27 H HN1 SAH . . . M 2 41.348 -22.117 20.55 1 72.51 ? HN1 SAH 301 J 1 
HETATM 28 H HN2 SAH . . . M 2 40.838 -23.071 21.726 1 72.51 ? HN2 SAH 301 J 1 
HETATM 29 H HA SAH . . . M 2 41.39 -21.65 23.192 1 72.8 ? HA SAH 301 J 1 
HETATM 30 H HB1 SAH . . . M 2 43.157 -20.821 22.145 1 71.66 ? HB1 SAH 301 J 1 
HETATM 31 H HB2 SAH . . . M 2 42.293 -19.474 22.298 1 71.66 ? HB2 SAH 301 J 1 
HETATM 32 H HG1 SAH . . . M 2 41.456 -20.026 20.065 1 70.11 ? HG1 SAH 301 J 1 
HETATM 33 H HG2 SAH . . . M 2 42.715 -20.983 19.972 1 70.11 ? HG2 SAH 301 J 1 
HETATM 34 H "H5'1" SAH . . . M 2 44.49 -18.486 17.956 1 69.25 ? "H5'1" SAH 301 J 1 
HETATM 35 H "H5'2" SAH . . . M 2 43.345 -19.529 17.774 1 69.25 ? "H5'2" SAH 301 J 1 
HETATM 36 H H4' SAH . . . M 2 44.809 -21.005 19.094 1 69.89 ? H4' SAH 301 J 1 
HETATM 37 H H3' SAH . . . M 2 46.562 -18.972 18.863 1 70.09 ? H3' SAH 301 J 1 
HETATM 38 H HO3' SAH . . . M 2 47.086 -21.618 19.277 0 71.47 ? HO3' SAH 301 J 1 
HETATM 39 H H2' SAH . . . M 2 47.195 -19.472 16.749 1 70.76 ? H2' SAH 301 J 1 
HETATM 40 H HO2' SAH . . . M 2 48.922 -20.928 16.916 0 73.74 ? HO2' SAH 301 J 1 
HETATM 41 H H1' SAH . . . M 2 46.683 -22.228 17.32 1 70.52 ? H1' SAH 301 J 1 
HETATM 42 H H8 SAH . . . M 2 46.595 -19.696 14.665 1 69.9 ? H8 SAH 301 J 1 
HETATM 43 H HN61 SAH . . . M 2 46.94 -24.056 10.658 0 66.64 ? HN61 SAH 301 J 1 
HETATM 44 H HN62 SAH . . . M 2 46.933 -22.544 10.843 0 66.64 ? HN62 SAH 301 J 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    473 
_model_server_stats.query_time_ms           696 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#