data_7EC0
#
_model_server_result.job_id            il0dJEDba7X9QSswUc84Xg 
_model_server_result.datetime_utc      '2024-10-20 19:05:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ec0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":301}' 
#
_entry.id    7EC0 
#
_exptl.entry_id    7EC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.5 
_cell.angle_gamma         90 
_cell.entry_id            7EC0 
_cell.length_a            82.459 
_cell.length_b            101.203 
_cell.length_c            103.363 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,Q,R 1 1 
C,F,K,L,S,V 2 1 
D,E,M,N,O,P,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 320 n n 
N HN1 SAH sing 321 n n 
N HN2 SAH sing 322 n n 
CA CB SAH sing 323 n n 
CA C SAH sing 324 n n 
CA HA SAH sing 325 n n 
CB CG SAH sing 326 n n 
CB HB1 SAH sing 327 n n 
CB HB2 SAH sing 328 n n 
CG SD SAH sing 329 n n 
CG HG1 SAH sing 330 n n 
CG HG2 SAH sing 331 n n 
SD C5' SAH sing 332 n n 
C O SAH doub 333 n n 
C OXT SAH sing 334 n n 
OXT HXT SAH sing 335 n n 
C5' C4' SAH sing 336 n n 
C5' "H5'1" SAH sing 337 n n 
C5' "H5'2" SAH sing 338 n n 
C4' O4' SAH sing 339 n n 
C4' C3' SAH sing 340 n n 
C4' H4' SAH sing 341 n n 
O4' C1' SAH sing 342 n n 
C3' O3' SAH sing 343 n n 
C3' C2' SAH sing 344 n n 
C3' H3' SAH sing 345 n n 
O3' HO3' SAH sing 346 n n 
C2' O2' SAH sing 347 n n 
C2' C1' SAH sing 348 n n 
C2' H2' SAH sing 349 n n 
O2' HO2' SAH sing 350 n n 
C1' N9 SAH sing 351 n n 
C1' H1' SAH sing 352 n n 
N9 C8 SAH sing 353 n y 
N9 C4 SAH sing 354 n y 
C8 N7 SAH doub 355 n y 
C8 H8 SAH sing 356 n n 
N7 C5 SAH sing 357 n y 
C5 C6 SAH sing 358 n y 
C5 C4 SAH doub 359 n y 
C6 N6 SAH sing 360 n n 
C6 N1 SAH doub 361 n y 
N6 HN61 SAH sing 362 n n 
N6 HN62 SAH sing 363 n n 
N1 C2 SAH sing 364 n y 
C2 N3 SAH doub 365 n y 
C2 H2 SAH sing 366 n n 
N3 C4 SAH sing 367 n y 
#
_atom_sites.entry_id                     7EC0 
_atom_sites.fract_transf_matrix[1][1]    0.012127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000742 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAH A 1 301 1 SAH SAH . 
H 3 J10 A 1 302 1 J10 MeF . 
I 2 SAH D 1 301 1 SAH SAH . 
J 3 J10 D 1 302 1 J10 MeF . 
K 2 SAH G 1 301 1 SAH SAH . 
L 3 J10 G 1 302 1 J10 MeF . 
M 2 SAH J 1 301 1 SAH SAH . 
N 3 J10 J 1 302 1 J10 MeF . 
O 2 SAH M 1 301 1 SAH SAH . 
P 3 J10 M 1 302 1 J10 MeF . 
Q 4 HOH A 1 401 2 HOH HOH . 
Q 4 HOH A 2 402 12 HOH HOH . 
Q 4 HOH A 3 403 1 HOH HOH . 
Q 4 HOH A 4 404 13 HOH HOH . 
R 4 HOH D 1 401 3 HOH HOH . 
R 4 HOH D 2 402 5 HOH HOH . 
R 4 HOH D 3 403 7 HOH HOH . 
R 4 HOH D 4 404 6 HOH HOH . 
R 4 HOH D 5 405 4 HOH HOH . 
R 4 HOH D 6 406 9 HOH HOH . 
S 4 HOH G 1 401 15 HOH HOH . 
S 4 HOH G 2 402 11 HOH HOH . 
S 4 HOH G 3 403 8 HOH HOH . 
S 4 HOH G 4 404 10 HOH HOH . 
S 4 HOH G 5 405 14 HOH HOH . 
T 4 HOH J 1 401 16 HOH HOH . 
U 4 HOH M 1 401 17 HOH HOH . 
U 4 HOH M 2 402 18 HOH HOH . 
U 4 HOH M 3 403 20 HOH HOH . 
U 4 HOH M 4 404 19 HOH HOH . 
V 4 HOH P 1 301 23 HOH HOH . 
V 4 HOH P 2 302 24 HOH HOH . 
V 4 HOH P 3 303 22 HOH HOH . 
V 4 HOH P 4 304 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . O 2 9.014 -3.285 3.652 1 73.65 ? N SAH 301 M 1 
HETATM 2 C CA SAH . . . O 2 9.782 -2.104 3.186 1 74.18 ? CA SAH 301 M 1 
HETATM 3 C CB SAH . . . O 2 9.641 -0.939 4.166 1 73.19 ? CB SAH 301 M 1 
HETATM 4 C CG SAH . . . O 2 10.225 -1.224 5.521 1 71.96 ? CG SAH 301 M 1 
HETATM 5 S SD SAH . . . O 2 10.663 0.241 6.443 1 69.54 ? SD SAH 301 M 1 
HETATM 6 C C SAH . . . O 2 11.257 -2.483 3.046 1 75.54 ? C SAH 301 M 1 
HETATM 7 O O SAH . . . O 2 11.546 -3.662 3.18 1 76.41 ? O SAH 301 M 1 
HETATM 8 O OXT SAH . . . O 2 12.051 -1.581 2.79 1 76.75 ? OXT SAH 301 M 1 
HETATM 9 C C5' SAH . . . O 2 9.734 0.062 7.971 1 68.41 ? C5' SAH 301 M 1 
HETATM 10 C C4' SAH . . . O 2 8.261 0.316 7.796 1 67.81 ? C4' SAH 301 M 1 
HETATM 11 O O4' SAH . . . O 2 7.559 -0.179 8.953 1 67.01 ? O4' SAH 301 M 1 
HETATM 12 C C3' SAH . . . O 2 7.866 1.787 7.667 1 67.13 ? C3' SAH 301 M 1 
HETATM 13 O O3' SAH . . . O 2 6.824 1.929 6.715 1 66.04 ? O3' SAH 301 M 1 
HETATM 14 C C2' SAH . . . O 2 7.3 2.1 9.05 1 67.26 ? C2' SAH 301 M 1 
HETATM 15 O O2' SAH . . . O 2 6.389 3.17 8.997 1 65.67 ? O2' SAH 301 M 1 
HETATM 16 C C1' SAH . . . O 2 6.604 0.777 9.32 1 67.69 ? C1' SAH 301 M 1 
HETATM 17 N N9 SAH . . . O 2 6.192 0.556 10.699 1 68.19 ? N9 SAH 301 M 1 
HETATM 18 C C8 SAH . . . O 2 6.781 1.049 11.829 1 68.58 ? C8 SAH 301 M 1 
HETATM 19 N N7 SAH . . . O 2 6.168 0.7 12.927 1 68.13 ? N7 SAH 301 M 1 
HETATM 20 C C5 SAH . . . O 2 5.115 -0.084 12.498 1 67.03 ? C5 SAH 301 M 1 
HETATM 21 C C6 SAH . . . O 2 4.1 -0.761 13.191 1 66.86 ? C6 SAH 301 M 1 
HETATM 22 N N6 SAH . . . O 2 3.97 -0.751 14.511 1 63.54 ? N6 SAH 301 M 1 
HETATM 23 N N1 SAH . . . O 2 3.208 -1.456 12.458 1 67.37 ? N1 SAH 301 M 1 
HETATM 24 C C2 SAH . . . O 2 3.338 -1.457 11.131 1 67.69 ? C2 SAH 301 M 1 
HETATM 25 N N3 SAH . . . O 2 4.242 -0.852 10.376 1 67.48 ? N3 SAH 301 M 1 
HETATM 26 C C4 SAH . . . O 2 5.117 -0.176 11.127 1 67 ? C4 SAH 301 M 1 
HETATM 27 H HN1 SAH . . . O 2 8.572 -3.083 4.526 1 73.65 ? HN1 SAH 301 M 1 
HETATM 28 H HN2 SAH . . . O 2 8.343 -3.507 3.002 1 73.65 ? HN2 SAH 301 M 1 
HETATM 29 H HA SAH . . . O 2 9.423 -1.822 2.313 1 74.18 ? HA SAH 301 M 1 
HETATM 30 H HB1 SAH . . . O 2 8.688 -0.742 4.284 1 73.19 ? HB1 SAH 301 M 1 
HETATM 31 H HB2 SAH . . . O 2 10.105 -0.16 3.796 1 73.19 ? HB2 SAH 301 M 1 
HETATM 32 H HG1 SAH . . . O 2 11.03 -1.774 5.416 1 71.96 ? HG1 SAH 301 M 1 
HETATM 33 H HG2 SAH . . . O 2 9.578 -1.739 6.049 1 71.96 ? HG2 SAH 301 M 1 
HETATM 34 H "H5'1" SAH . . . O 2 10.075 0.685 8.608 1 68.41 ? "H5'1" SAH 301 M 1 
HETATM 35 H "H5'2" SAH . . . O 2 9.851 -0.827 8.295 1 68.41 ? "H5'2" SAH 301 M 1 
HETATM 36 H H4' SAH . . . O 2 7.945 -0.165 6.992 1 67.81 ? H4' SAH 301 M 1 
HETATM 37 H H3' SAH . . . O 2 8.663 2.348 7.484 1 67.13 ? H3' SAH 301 M 1 
HETATM 38 H HO3' SAH . . . O 2 6.154 1.477 6.974 0 66.04 ? HO3' SAH 301 M 1 
HETATM 39 H H2' SAH . . . O 2 8.034 2.269 9.698 1 67.26 ? H2' SAH 301 M 1 
HETATM 40 H HO2' SAH . . . O 2 6.092 3.321 9.778 0 65.67 ? HO2' SAH 301 M 1 
HETATM 41 H H1' SAH . . . O 2 5.812 0.707 8.74 1 67.69 ? H1' SAH 301 M 1 
HETATM 42 H H8 SAH . . . O 2 7.554 1.588 11.816 1 68.58 ? H8 SAH 301 M 1 
HETATM 43 H HN61 SAH . . . O 2 3.312 -1.192 14.886 0 63.54 ? HN61 SAH 301 M 1 
HETATM 44 H HN62 SAH . . . O 2 4.543 -0.303 15.001 0 63.54 ? HN62 SAH 301 M 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    177 
_model_server_stats.query_time_ms           456 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#