data_7EC0
#
_model_server_result.job_id            G88ocw648Xlw7qOhDkDElA 
_model_server_result.datetime_utc      '2024-10-20 19:13:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ec0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    7EC0 
#
_exptl.entry_id    7EC0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              250.376 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Methyl farnesoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.5 
_cell.angle_gamma         90 
_cell.entry_id            7EC0 
_cell.length_a            82.459 
_cell.length_b            101.203 
_cell.length_c            103.363 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EC0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,Q,R 1 1 
C,F,K,L,S,V 2 1 
D,E,M,N,O,P,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
#
_chem_comp.formula           'C16 H26 O2' 
_chem_comp.formula_weight    250.376 
_chem_comp.id                J10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Methyl farnesoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2E,6E)-Methyl 3,7,11-trimethyldodeca-2,6,10-trienoate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C4 J10 sing 173 n n 
C3 C4 J10 doub 174 z n 
C3 C2 J10 sing 175 n n 
O1 C2 J10 sing 176 n n 
O1 C1 J10 sing 177 n n 
C4 C6 J10 sing 178 n n 
C2 O2 J10 doub 179 n n 
C6 C7 J10 sing 180 n n 
C7 C8 J10 sing 181 n n 
C8 C9 J10 doub 182 e n 
C10 C9 J10 sing 183 n n 
C9 C11 J10 sing 184 n n 
C13 C12 J10 sing 185 n n 
C13 C14 J10 doub 186 n n 
C15 C14 J10 sing 187 n n 
C12 C11 J10 sing 188 n n 
C14 C16 J10 sing 189 n n 
C1 H3 J10 sing 190 n n 
C1 H1 J10 sing 191 n n 
C1 H2 J10 sing 192 n n 
C3 H4 J10 sing 193 n n 
C5 H7 J10 sing 194 n n 
C5 H5 J10 sing 195 n n 
C5 H6 J10 sing 196 n n 
C6 H8 J10 sing 197 n n 
C6 H9 J10 sing 198 n n 
C7 H10 J10 sing 199 n n 
C7 H11 J10 sing 200 n n 
C8 H12 J10 sing 201 n n 
C10 H15 J10 sing 202 n n 
C10 H13 J10 sing 203 n n 
C10 H14 J10 sing 204 n n 
C11 H16 J10 sing 205 n n 
C11 H17 J10 sing 206 n n 
C12 H19 J10 sing 207 n n 
C12 H18 J10 sing 208 n n 
C13 H20 J10 sing 209 n n 
C15 H23 J10 sing 210 n n 
C15 H21 J10 sing 211 n n 
C15 H22 J10 sing 212 n n 
C16 H25 J10 sing 213 n n 
C16 H26 J10 sing 214 n n 
C16 H24 J10 sing 215 n n 
#
_atom_sites.entry_id                     7EC0 
_atom_sites.fract_transf_matrix[1][1]    0.012127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000742 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAH A 1 301 1 SAH SAH . 
H 3 J10 A 1 302 1 J10 MeF . 
I 2 SAH D 1 301 1 SAH SAH . 
J 3 J10 D 1 302 1 J10 MeF . 
K 2 SAH G 1 301 1 SAH SAH . 
L 3 J10 G 1 302 1 J10 MeF . 
M 2 SAH J 1 301 1 SAH SAH . 
N 3 J10 J 1 302 1 J10 MeF . 
O 2 SAH M 1 301 1 SAH SAH . 
P 3 J10 M 1 302 1 J10 MeF . 
Q 4 HOH A 1 401 2 HOH HOH . 
Q 4 HOH A 2 402 12 HOH HOH . 
Q 4 HOH A 3 403 1 HOH HOH . 
Q 4 HOH A 4 404 13 HOH HOH . 
R 4 HOH D 1 401 3 HOH HOH . 
R 4 HOH D 2 402 5 HOH HOH . 
R 4 HOH D 3 403 7 HOH HOH . 
R 4 HOH D 4 404 6 HOH HOH . 
R 4 HOH D 5 405 4 HOH HOH . 
R 4 HOH D 6 406 9 HOH HOH . 
S 4 HOH G 1 401 15 HOH HOH . 
S 4 HOH G 2 402 11 HOH HOH . 
S 4 HOH G 3 403 8 HOH HOH . 
S 4 HOH G 4 404 10 HOH HOH . 
S 4 HOH G 5 405 14 HOH HOH . 
T 4 HOH J 1 401 16 HOH HOH . 
U 4 HOH M 1 401 17 HOH HOH . 
U 4 HOH M 2 402 18 HOH HOH . 
U 4 HOH M 3 403 20 HOH HOH . 
U 4 HOH M 4 404 19 HOH HOH . 
V 4 HOH P 1 301 23 HOH HOH . 
V 4 HOH P 2 302 24 HOH HOH . 
V 4 HOH P 3 303 22 HOH HOH . 
V 4 HOH P 4 304 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 J10 . . . L 3 -3.084 -48.095 25.755 0.5 54.11 ? C1 J10 302 G 1 
HETATM 2 O O1 J10 . . . L 3 -2.383 -49.105 25.003 0.3 56.01 ? O1 J10 302 G 1 
HETATM 3 C C2 J10 . . . L 3 -2.49 -50.324 25.509 0.3 57.04 ? C2 J10 302 G 1 
HETATM 4 O O2 J10 . . . L 3 -3.289 -50.603 26.374 0.3 57.52 ? O2 J10 302 G 1 
HETATM 5 C C3 J10 . . . L 3 -1.536 -51.245 24.91 1 57.13 ? C3 J10 302 G 1 
HETATM 6 C C4 J10 . . . L 3 -0.92 -52.241 25.526 1 58.27 ? C4 J10 302 G 1 
HETATM 7 C C5 J10 . . . L 3 -0.536 -53.546 24.896 1 58.51 ? C5 J10 302 G 1 
HETATM 8 C C6 J10 . . . L 3 -0.523 -52.098 26.972 1 59.6 ? C6 J10 302 G 1 
HETATM 9 C C7 J10 . . . L 3 -0.23 -50.66 27.385 1 59.64 ? C7 J10 302 G 1 
HETATM 10 C C8 J10 . . . L 3 -1.219 -50.132 28.365 1 58.64 ? C8 J10 302 G 1 
HETATM 11 C C9 J10 . . . L 3 -1.528 -50.62 29.559 1 59.81 ? C9 J10 302 G 1 
HETATM 12 C C10 J10 . . . L 3 -2.603 -50.038 30.42 1 61.65 ? C10 J10 302 G 1 
HETATM 13 C C11 J10 . . . L 3 -0.791 -51.796 30.139 0.5 58.63 ? C11 J10 302 G 1 
HETATM 14 C C12 J10 . . . L 3 0.708 -51.764 29.946 0.5 57.51 ? C12 J10 302 G 1 
HETATM 15 C C13 J10 . . . L 3 1.393 -52.821 30.737 0.5 56.08 ? C13 J10 302 G 1 
HETATM 16 C C14 J10 . . . L 3 0.997 -53.355 31.876 0.5 55.3 ? C14 J10 302 G 1 
HETATM 17 C C15 J10 . . . L 3 -0.167 -52.827 32.651 0.5 54.93 ? C15 J10 302 G 1 
HETATM 18 C C16 J10 . . . L 3 1.668 -54.539 32.474 0.5 56.17 ? C16 J10 302 G 1 
HETATM 19 H H3 J10 . . . L 3 -2.962 -47.233 25.328 0.5 54.11 ? H3 J10 302 G 1 
HETATM 20 H H1 J10 . . . L 3 -2.731 -48.063 26.658 0.5 54.11 ? H1 J10 302 G 1 
HETATM 21 H H2 J10 . . . L 3 -4.029 -48.313 25.783 0.5 54.11 ? H2 J10 302 G 1 
HETATM 22 H H4 J10 . . . L 3 -1.345 -51.113 23.999 1 57.13 ? H4 J10 302 G 1 
HETATM 23 H H7 J10 . . . L 3 0.425 -53.662 24.951 1 58.51 ? H7 J10 302 G 1 
HETATM 24 H H5 J10 . . . L 3 -0.809 -53.549 23.964 1 58.51 ? H5 J10 302 G 1 
HETATM 25 H H6 J10 . . . L 3 -0.976 -54.274 25.363 1 58.51 ? H6 J10 302 G 1 
HETATM 26 H H8 J10 . . . L 3 0.274 -52.643 27.136 1 59.6 ? H8 J10 302 G 1 
HETATM 27 H H9 J10 . . . L 3 -1.245 -52.447 27.534 1 59.6 ? H9 J10 302 G 1 
HETATM 28 H H10 J10 . . . L 3 -0.232 -50.092 26.587 1 59.64 ? H10 J10 302 G 1 
HETATM 29 H H11 J10 . . . L 3 0.666 -50.617 27.776 1 59.64 ? H11 J10 302 G 1 
HETATM 30 H H12 J10 . . . L 3 -1.682 -49.352 28.099 1 58.64 ? H12 J10 302 G 1 
HETATM 31 H H15 J10 . . . L 3 -3.281 -50.711 30.592 1 61.65 ? H15 J10 302 G 1 
HETATM 32 H H13 J10 . . . L 3 -3.008 -49.281 29.967 1 61.65 ? H13 J10 302 G 1 
HETATM 33 H H14 J10 . . . L 3 -2.221 -49.743 31.261 1 61.65 ? H14 J10 302 G 1 
HETATM 34 H H16 J10 . . . L 3 -1.134 -52.617 29.73 0.5 58.63 ? H16 J10 302 G 1 
HETATM 35 H H17 J10 . . . L 3 -0.974 -51.841 31.1 0.5 58.63 ? H17 J10 302 G 1 
HETATM 36 H H19 J10 . . . L 3 0.91 -51.883 28.995 0.5 57.51 ? H19 J10 302 G 1 
HETATM 37 H H18 J10 . . . L 3 1.045 -50.884 30.212 0.5 57.51 ? H18 J10 302 G 1 
HETATM 38 H H20 J10 . . . L 3 2.205 -53.141 30.375 0.5 56.08 ? H20 J10 302 G 1 
HETATM 39 H H23 J10 . . . L 3 -0.839 -53.52 32.741 0.5 54.93 ? H23 J10 302 G 1 
HETATM 40 H H21 J10 . . . L 3 -0.55 -52.066 32.185 0.5 54.93 ? H21 J10 302 G 1 
HETATM 41 H H22 J10 . . . L 3 0.128 -52.549 33.532 0.5 54.93 ? H22 J10 302 G 1 
HETATM 42 H H25 J10 . . . L 3 1.031 -55.265 32.561 0.5 56.17 ? H25 J10 302 G 1 
HETATM 43 H H26 J10 . . . L 3 2.014 -54.309 33.351 0.5 56.17 ? H26 J10 302 G 1 
HETATM 44 H H24 J10 . . . L 3 2.401 -54.821 31.903 0.5 56.17 ? H24 J10 302 G 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#