data_7ECT # _model_server_result.job_id 0eitnVwei5jgoAR0A-n7aw _model_server_result.datetime_utc '2024-11-06 00:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ect # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7ECT # _exptl.entry_id 7ECT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ECT _cell.length_a 119.86 _cell.length_b 153.09 _cell.length_c 259.27 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ECT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -119.86 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 250 n n PA O2A NDP sing 251 n n PA O5B NDP sing 252 n n PA O3 NDP sing 253 n n O2A HOA2 NDP sing 254 n n O5B C5B NDP sing 255 n n C5B C4B NDP sing 256 n n C5B H51A NDP sing 257 n n C5B H52A NDP sing 258 n n C4B O4B NDP sing 259 n n C4B C3B NDP sing 260 n n C4B H4B NDP sing 261 n n O4B C1B NDP sing 262 n n C3B O3B NDP sing 263 n n C3B C2B NDP sing 264 n n C3B H3B NDP sing 265 n n O3B HO3A NDP sing 266 n n C2B O2B NDP sing 267 n n C2B C1B NDP sing 268 n n C2B H2B NDP sing 269 n n O2B P2B NDP sing 270 n n C1B N9A NDP sing 271 n n C1B H1B NDP sing 272 n n N9A C8A NDP sing 273 n y N9A C4A NDP sing 274 n y C8A N7A NDP doub 275 n y C8A H8A NDP sing 276 n n N7A C5A NDP sing 277 n y C5A C6A NDP sing 278 n y C5A C4A NDP doub 279 n y C6A N6A NDP sing 280 n n C6A N1A NDP doub 281 n y N6A H61A NDP sing 282 n n N6A H62A NDP sing 283 n n N1A C2A NDP sing 284 n y C2A N3A NDP doub 285 n y C2A H2A NDP sing 286 n n N3A C4A NDP sing 287 n y O3 PN NDP sing 288 n n PN O1N NDP doub 289 n n PN O2N NDP sing 290 n n PN O5D NDP sing 291 n n O2N H21N NDP sing 292 n n O5D C5D NDP sing 293 n n C5D C4D NDP sing 294 n n C5D H51N NDP sing 295 n n C5D H52N NDP sing 296 n n C4D O4D NDP sing 297 n n C4D C3D NDP sing 298 n n C4D H4D NDP sing 299 n n O4D C1D NDP sing 300 n n C3D O3D NDP sing 301 n n C3D C2D NDP sing 302 n n C3D H3D NDP sing 303 n n O3D HO3N NDP sing 304 n n C2D O2D NDP sing 305 n n C2D C1D NDP sing 306 n n C2D H2D NDP sing 307 n n O2D HO2N NDP sing 308 n n C1D N1N NDP sing 309 n n C1D H1D NDP sing 310 n n N1N C2N NDP sing 311 n n N1N C6N NDP sing 312 n n C2N C3N NDP doub 313 n n C2N H2N NDP sing 314 n n C3N C7N NDP sing 315 n n C3N C4N NDP sing 316 n n C7N O7N NDP doub 317 n n C7N N7N NDP sing 318 n n N7N H71N NDP sing 319 n n N7N H72N NDP sing 320 n n C4N C5N NDP sing 321 n n C4N H41N NDP sing 322 n n C4N H42N NDP sing 323 n n C5N C6N NDP doub 324 n n C5N H5N NDP sing 325 n n C6N H6N NDP sing 326 n n P2B O1X NDP doub 327 n n P2B O2X NDP sing 328 n n P2B O3X NDP sing 329 n n O2X HOP2 NDP sing 330 n n O3X HOP3 NDP sing 331 n n # _atom_sites.entry_id 7ECT _atom_sites.fract_transf_matrix[1][1] 0.008343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NDP A 1 501 1 NDP NDP . E 3 GOL A 1 502 2 GOL GOL . F 3 GOL A 1 503 4 GOL GOL . G 3 GOL A 1 504 12 GOL GOL . H 3 GOL A 1 505 13 GOL GOL . I 3 GOL A 1 506 14 GOL GOL . J 4 TLA A 1 507 1 TLA TLA . K 2 NDP B 1 501 2 NDP NDP . L 3 GOL B 1 502 5 GOL GOL . M 4 TLA B 1 503 2 TLA TLA . N 2 NDP C 1 501 3 NDP NDP . O 3 GOL C 1 502 1 GOL GOL . P 3 GOL C 1 503 3 GOL GOL . Q 3 GOL C 1 504 10 GOL GOL . R 3 GOL C 1 505 11 GOL GOL . S 3 GOL C 1 506 16 GOL GOL . T 3 GOL C 1 507 17 GOL GOL . U 4 TLA C 1 508 3 TLA TLA . V 5 HOH A 1 601 27 HOH HOH . V 5 HOH A 2 602 83 HOH HOH . V 5 HOH A 3 603 24 HOH HOH . V 5 HOH A 4 604 91 HOH HOH . V 5 HOH A 5 605 1 HOH HOH . V 5 HOH A 6 606 44 HOH HOH . V 5 HOH A 7 607 84 HOH HOH . V 5 HOH A 8 608 12 HOH HOH . V 5 HOH A 9 609 75 HOH HOH . V 5 HOH A 10 610 28 HOH HOH . V 5 HOH A 11 611 10 HOH HOH . V 5 HOH A 12 612 6 HOH HOH . V 5 HOH A 13 613 46 HOH HOH . V 5 HOH A 14 614 85 HOH HOH . V 5 HOH A 15 615 9 HOH HOH . V 5 HOH A 16 616 86 HOH HOH . V 5 HOH A 17 617 49 HOH HOH . V 5 HOH A 18 618 54 HOH HOH . V 5 HOH A 19 619 55 HOH HOH . W 5 HOH B 1 601 74 HOH HOH . W 5 HOH B 2 602 19 HOH HOH . W 5 HOH B 3 603 2 HOH HOH . W 5 HOH B 4 604 8 HOH HOH . W 5 HOH B 5 605 71 HOH HOH . W 5 HOH B 6 606 11 HOH HOH . W 5 HOH B 7 607 51 HOH HOH . W 5 HOH B 8 608 56 HOH HOH . W 5 HOH B 9 609 52 HOH HOH . W 5 HOH B 10 610 50 HOH HOH . W 5 HOH B 11 611 73 HOH HOH . W 5 HOH B 12 612 43 HOH HOH . W 5 HOH B 13 613 80 HOH HOH . W 5 HOH B 14 614 17 HOH HOH . W 5 HOH B 15 615 47 HOH HOH . W 5 HOH B 16 616 30 HOH HOH . W 5 HOH B 17 617 78 HOH HOH . W 5 HOH B 18 618 70 HOH HOH . W 5 HOH B 19 619 81 HOH HOH . W 5 HOH B 20 620 82 HOH HOH . W 5 HOH B 21 621 45 HOH HOH . W 5 HOH B 22 622 63 HOH HOH . W 5 HOH B 23 623 68 HOH HOH . W 5 HOH B 24 624 67 HOH HOH . W 5 HOH B 25 625 33 HOH HOH . W 5 HOH B 26 626 59 HOH HOH . W 5 HOH B 27 627 62 HOH HOH . W 5 HOH B 28 628 34 HOH HOH . W 5 HOH B 29 629 48 HOH HOH . W 5 HOH B 30 630 77 HOH HOH . W 5 HOH B 31 631 64 HOH HOH . W 5 HOH B 32 632 76 HOH HOH . W 5 HOH B 33 633 92 HOH HOH . W 5 HOH B 34 634 53 HOH HOH . W 5 HOH B 35 635 66 HOH HOH . W 5 HOH B 36 636 72 HOH HOH . W 5 HOH B 37 637 16 HOH HOH . W 5 HOH B 38 638 65 HOH HOH . W 5 HOH B 39 639 79 HOH HOH . W 5 HOH B 40 640 69 HOH HOH . X 5 HOH C 1 601 18 HOH HOH . X 5 HOH C 2 602 15 HOH HOH . X 5 HOH C 3 603 32 HOH HOH . X 5 HOH C 4 604 29 HOH HOH . X 5 HOH C 5 605 38 HOH HOH . X 5 HOH C 6 606 23 HOH HOH . X 5 HOH C 7 607 60 HOH HOH . X 5 HOH C 8 608 21 HOH HOH . X 5 HOH C 9 609 88 HOH HOH . X 5 HOH C 10 610 25 HOH HOH . X 5 HOH C 11 611 42 HOH HOH . X 5 HOH C 12 612 31 HOH HOH . X 5 HOH C 13 613 14 HOH HOH . X 5 HOH C 14 614 89 HOH HOH . X 5 HOH C 15 615 90 HOH HOH . X 5 HOH C 16 616 22 HOH HOH . X 5 HOH C 17 617 26 HOH HOH . X 5 HOH C 18 618 35 HOH HOH . X 5 HOH C 19 619 58 HOH HOH . X 5 HOH C 20 620 5 HOH HOH . X 5 HOH C 21 621 3 HOH HOH . X 5 HOH C 22 622 87 HOH HOH . X 5 HOH C 23 623 40 HOH HOH . X 5 HOH C 24 624 41 HOH HOH . X 5 HOH C 25 625 20 HOH HOH . X 5 HOH C 26 626 61 HOH HOH . X 5 HOH C 27 627 57 HOH HOH . X 5 HOH C 28 628 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 2 -35.076 -2.256 -74.479 1 28.62 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . D 2 -35.715 -0.889 -74.57 1 31.13 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . D 2 -34.101 -2.541 -73.359 1 28.44 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . D 2 -34.401 -2.337 -75.916 1 27.83 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . D 2 -35.23 -2.203 -77.06 1 27.12 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . D 2 -34.359 -2.504 -78.249 1 27.69 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . D 2 -35.193 -2.786 -79.34 1 28.09 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . D 2 -33.551 -1.292 -78.634 1 29.21 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . D 2 -32.369 -1.561 -79.402 1 29.77 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . D 2 -34.498 -0.581 -79.527 1 30.25 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . D 2 -33.823 0.327 -80.37 1 32.97 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . D 2 -35.08 -1.731 -80.265 1 29.61 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . D 2 -36.429 -1.407 -80.65 1 31.7 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . D 2 -37.463 -1.16 -79.815 1 33.68 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . D 2 -38.607 -0.918 -80.519 1 35.53 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . D 2 -38.267 -1.024 -81.825 1 34.45 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . D 2 -38.986 -0.899 -83.104 1 32.28 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . D 2 -40.296 -0.611 -83.054 1 31.21 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . D 2 -38.282 -1.087 -84.256 1 31.47 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . D 2 -36.951 -1.382 -84.243 1 31.59 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . D 2 -36.203 -1.526 -83.129 1 31.74 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . D 2 -36.818 -1.351 -81.914 1 33.58 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . D 2 -36.22 -3.415 -74.542 1 30.24 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . D 2 -35.952 -4.918 -74.018 1 32.11 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . D 2 -34.577 -5.293 -74.519 1 34.79 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . D 2 -36.217 -4.964 -72.524 1 30.82 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . D 2 -36.975 -5.875 -74.776 1 30.61 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . D 2 -36.895 -6.084 -76.168 1 31.75 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . D 2 -37.912 -7.178 -76.512 1 34.01 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . D 2 -37.749 -8.299 -75.63 1 33.39 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . D 2 -39.361 -6.712 -76.373 1 35.11 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . D 2 -40.23 -7.207 -77.422 1 36.81 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . D 2 -39.756 -7.264 -75.025 1 35.51 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . D 2 -41.161 -7.463 -74.941 1 36.14 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . D 2 -38.975 -8.565 -74.979 1 36.23 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . D 2 -38.767 -9.073 -73.625 1 39.61 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . D 2 -38.103 -8.376 -72.677 1 41.52 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . D 2 -37.927 -8.89 -71.378 1 44.24 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . D 2 -37.162 -8.211 -70.264 1 49.7 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . D 2 -37.036 -8.774 -69.174 1 47.37 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . D 2 -36.556 -7.037 -70.473 1 54.98 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . D 2 -38.481 -10.239 -71.027 1 44 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . D 2 -39.153 -10.881 -72.14 1 44.43 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . D 2 -39.276 -10.28 -73.379 1 41.91 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . D 2 -33.504 1.759 -79.748 1 34.35 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . D 2 -34.817 2.137 -79.111 1 34.45 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . D 2 -32.371 1.492 -78.766 1 32.17 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . D 2 -33.203 2.565 -80.996 1 34.34 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 48 #