data_7EDA # _model_server_result.job_id JCrel03h5TI7o71DLS53kw _model_server_result.datetime_utc '2024-11-04 22:31:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XB","auth_seq_id":407}' # _entry.id 7EDA # _exptl.entry_id 7EDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 26 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EDA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 26 DA N N ? 26 XB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 17 O CYS 19 1_555 M SG CYS 42 O CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 D C PRO 324 D PRO 335 1_555 D N HSK 325 D HSK 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C HSK 325 D HSK 336 1_555 D N GLU 326 D GLU 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 H C FME 1 I FME 1 1_555 H N GLU 2 I GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 N C FME 1 T FME 1 1_555 N N GLU 2 T GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 P SG CYS 63 V CYS 37 1_555 IC CAB HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? covale ? covale6 P SG CYS 66 V CYS 40 1_555 IC CAC HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc1 A NE2 HIS 205 A HIS 215 1_555 V FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc2 A NE2 HIS 262 A HIS 272 1_555 V FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A NE2 HIS 322 A HIS 332 1_555 U MN1 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A OE1 GLU 323 A GLU 333 1_555 U MN3 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 A OE2 GLU 323 A GLU 333 1_555 U MN4 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 A OD1 ASP 332 A ASP 342 1_555 U MN2 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 A OD2 ASP 332 A ASP 342 1_555 U MN1 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 A O ALA 334 A ALA 344 1_555 U CA1 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc9 A OXT ALA 334 A ALA 344 1_555 U MN2 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 U MN4 OEX . A OEX 401 1_555 JC O HOH . A HOH 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 U MN2 OEX . A OEX 401 1_555 C OE1 GLU 332 C GLU 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc12 V FE FE2 . A FE2 402 1_555 D NE2 HIS 203 D HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc13 V FE FE2 . A FE2 402 1_555 D NE2 HIS 257 D HIS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc14 V FE FE2 . A FE2 402 1_555 SB O1 BCT . D BCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc15 V FE FE2 . A FE2 402 1_555 SB O3 BCT . D BCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc16 X MG CLA . A CLA 406 1_555 JC O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc17 Y MG CLA . A CLA 407 1_555 JC O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc18 GA MG CLA . B CLA 602 1_555 KC O HOH . B HOH 979 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc19 MA MG CLA . B CLA 608 1_555 KC O HOH . B HOH 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 PA MG CLA . B CLA 611 1_555 KC O HOH . B HOH 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc21 C OD1 ASN 17 C ASN 39 1_555 KB MG CLA . C CLA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc22 DB MG CLA . C CLA 504 1_555 LC O HOH . C HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc23 GB MG CLA . C CLA 507 1_555 LC O HOH . C HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc24 E NE2 HIS 23 E HIS 23 1_555 CC FE HEM . F HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc25 F NE2 HIS 24 F HIS 24 1_555 CC FE HEM . F HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc26 P NE2 HIS 67 V HIS 41 1_555 IC FE HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc27 P NE2 HIS 118 V HIS 92 1_555 IC FE HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # _atom_sites.entry_id 7EDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 21 OEX A 1 401 401 OEX OEX . V 22 FE2 A 1 402 402 FE2 FE2 . W 23 CLA A 1 405 405 CLA CLA . X 23 CLA A 1 406 406 CLA CLA . Y 23 CLA A 1 407 407 CLA CLA . Z 24 PHO A 1 408 408 PHO PHO . AA 24 PHO A 1 409 409 PHO PHO . BA 23 CLA A 1 410 410 CLA CLA . CA 25 BCR A 1 411 411 BCR BCR . DA 26 SQD A 1 412 412 SQD SQD . EA 27 LMG A 1 413 413 LMG LMG . FA 28 PL9 A 1 414 414 PL9 PL9 . GA 23 CLA B 1 602 602 CLA CLA . HA 23 CLA B 1 603 603 CLA CLA . IA 23 CLA B 1 604 604 CLA CLA . JA 23 CLA B 1 605 605 CLA CLA . KA 23 CLA B 1 606 606 CLA CLA . LA 23 CLA B 1 607 607 CLA CLA . MA 23 CLA B 1 608 608 CLA CLA . NA 23 CLA B 1 609 609 CLA CLA . OA 23 CLA B 1 610 610 CLA CLA . PA 23 CLA B 1 611 611 CLA CLA . QA 23 CLA B 1 612 612 CLA CLA . RA 23 CLA B 1 613 613 CLA CLA . SA 23 CLA B 1 614 614 CLA CLA . TA 23 CLA B 1 615 615 CLA CLA . UA 23 CLA B 1 616 616 CLA CLA . VA 23 CLA B 1 617 617 CLA CLA . WA 25 BCR B 1 618 618 BCR BCR . XA 29 UNL B 1 619 619 UNL UNL . YA 25 BCR B 1 620 620 BCR BCR . ZA 27 LMG B 1 622 622 LMG LMG . AB 23 CLA C 1 501 501 CLA CLA . BB 23 CLA C 1 502 502 CLA CLA . CB 23 CLA C 1 503 503 CLA CLA . DB 23 CLA C 1 504 504 CLA CLA . EB 23 CLA C 1 505 505 CLA CLA . FB 23 CLA C 1 506 506 CLA CLA . GB 23 CLA C 1 507 507 CLA CLA . HB 23 CLA C 1 508 508 CLA CLA . IB 23 CLA C 1 509 509 CLA CLA . JB 23 CLA C 1 510 510 CLA CLA . KB 23 CLA C 1 511 511 CLA CLA . LB 23 CLA C 1 512 512 CLA CLA . MB 23 CLA C 1 513 513 CLA CLA . NB 25 BCR C 1 514 514 BCR BCR . OB 25 BCR C 1 515 515 BCR BCR . PB 30 DGD C 1 516 516 DGD DGD . QB 30 DGD C 1 517 517 DGD DGD . RB 30 DGD C 1 518 518 DGD DGD . SB 31 BCT D 1 401 401 BCT BCT . TB 23 CLA D 1 402 402 CLA CLA . UB 23 CLA D 1 403 403 CLA CLA . VB 25 BCR D 1 404 404 BCR BCR . WB 28 PL9 D 1 405 405 PL9 PL9 . XB 26 SQD D 1 407 407 SQD SQD . YB 32 LHG D 1 408 408 LHG LHG . ZB 32 LHG D 1 409 409 LHG LHG . AC 32 LHG D 1 410 410 LHG LHG . BC 27 LMG D 1 411 411 LMG LMG . CC 33 HEM F 1 101 101 HEM HEM . DC 34 RRX H 1 101 101 RRX RRX . EC 30 DGD H 1 102 102 DGD DGD . FC 25 BCR K 1 101 101 BCR BCR . GC 25 BCR K 1 102 102 BCR BCR . HC 32 LHG L 1 101 101 LHG LHG . IC 35 HEC V 1 201 201 HEC HEM . JC 36 HOH A 1 510 510 HOH HOH . JC 36 HOH A 2 513 513 HOH HOH . JC 36 HOH A 3 552 552 HOH HOH . JC 36 HOH A 4 565 565 HOH HOH . JC 36 HOH A 5 595 595 HOH HOH . JC 36 HOH A 6 645 645 HOH HOH . JC 36 HOH A 7 659 659 HOH HOH . KC 36 HOH B 1 715 715 HOH HOH . KC 36 HOH B 2 843 843 HOH HOH . KC 36 HOH B 3 880 880 HOH HOH . KC 36 HOH B 4 957 957 HOH HOH . KC 36 HOH B 5 979 979 HOH HOH . LC 36 HOH C 1 629 629 HOH HOH . LC 36 HOH C 2 638 638 HOH HOH . LC 36 HOH C 3 694 694 HOH HOH . LC 36 HOH C 4 744 744 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . XB 26 75.124 79.765 68.307 1 42.33 ? O6 SQD 407 D 1 HETATM 2 C C44 SQD . . . XB 26 74.67 81.112 68.169 1 42.33 ? C44 SQD 407 D 1 HETATM 3 C C45 SQD . . . XB 26 75.659 81.971 67.398 1 42.33 ? C45 SQD 407 D 1 HETATM 4 C C46 SQD . . . XB 26 76.778 82.417 68.324 1 42.33 ? C46 SQD 407 D 1 HETATM 5 O O48 SQD . . . XB 26 76.397 83.589 69.041 1 42.33 ? O48 SQD 407 D 1 HETATM 6 C C23 SQD . . . XB 26 77.457 84.429 69.575 1 42.33 ? C23 SQD 407 D 1 HETATM 7 O O10 SQD . . . XB 26 78.518 83.917 69.863 1 42.33 ? O10 SQD 407 D 1 HETATM 8 C C24 SQD . . . XB 26 77.26 85.91 69.755 1 42.33 ? C24 SQD 407 D 1 HETATM 9 C C25 SQD . . . XB 26 78.394 86.522 70.562 1 42.33 ? C25 SQD 407 D 1 HETATM 10 C C26 SQD . . . XB 26 78.082 87.985 70.835 1 42.33 ? C26 SQD 407 D 1 HETATM 11 C C1 SQD . . . XB 26 74.101 79.034 68.977 1 42.33 ? C1 SQD 407 D 1 HETATM 12 C C2 SQD . . . XB 26 74.38 77.545 69.145 1 42.33 ? C2 SQD 407 D 1 HETATM 13 O O2 SQD . . . XB 26 74.703 76.917 67.907 1 42.33 ? O2 SQD 407 D 1 HETATM 14 C C3 SQD . . . XB 26 73.089 76.971 69.714 1 42.33 ? C3 SQD 407 D 1 HETATM 15 O O3 SQD . . . XB 26 73.184 75.55 69.864 1 42.33 ? O3 SQD 407 D 1 HETATM 16 C C4 SQD . . . XB 26 72.725 77.576 71.068 1 42.33 ? C4 SQD 407 D 1 HETATM 17 O O4 SQD . . . XB 26 71.296 77.588 71.166 1 42.33 ? O4 SQD 407 D 1 HETATM 18 C C5 SQD . . . XB 26 73.241 78.999 71.338 1 42.33 ? C5 SQD 407 D 1 HETATM 19 C C6 SQD . . . XB 26 74.213 79.034 72.508 1 42.33 ? C6 SQD 407 D 1 HETATM 20 O O5 SQD . . . XB 26 73.887 79.673 70.239 1 42.33 ? O5 SQD 407 D 1 HETATM 21 S S SQD . . . XB 26 74.271 80.586 73.094 1 42.33 ? S SQD 407 D 1 HETATM 22 O O7 SQD . . . XB 26 73.265 81.438 72.43 1 42.33 ? O7 SQD 407 D 1 HETATM 23 O O8 SQD . . . XB 26 73.972 80.547 74.536 1 42.33 ? O8 SQD 407 D 1 HETATM 24 O O9 SQD . . . XB 26 75.616 81.14 72.883 1 42.33 ? O9 SQD 407 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #