data_7EDA # _model_server_result.job_id kSzmSPtRPBhqQKWn8JlJ5g _model_server_result.datetime_utc '2024-11-04 22:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":411}' # _entry.id 7EDA # _exptl.entry_id 7EDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 536.873 _entity.id 25 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-CAROTENE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EDA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 25 CA N N ? 25 WA N N ? 25 YA N N ? 25 NB N N ? 25 OB N N ? 25 VB N N ? 25 FC N N ? 25 GC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 17 O CYS 19 1_555 M SG CYS 42 O CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 D C PRO 324 D PRO 335 1_555 D N HSK 325 D HSK 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C HSK 325 D HSK 336 1_555 D N GLU 326 D GLU 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 H C FME 1 I FME 1 1_555 H N GLU 2 I GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 N C FME 1 T FME 1 1_555 N N GLU 2 T GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 P SG CYS 63 V CYS 37 1_555 IC CAB HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? covale ? covale6 P SG CYS 66 V CYS 40 1_555 IC CAC HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc1 A NE2 HIS 205 A HIS 215 1_555 V FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc2 A NE2 HIS 262 A HIS 272 1_555 V FE FE2 . A FE2 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A NE2 HIS 322 A HIS 332 1_555 U MN1 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A OE1 GLU 323 A GLU 333 1_555 U MN3 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 A OE2 GLU 323 A GLU 333 1_555 U MN4 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 A OD1 ASP 332 A ASP 342 1_555 U MN2 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 A OD2 ASP 332 A ASP 342 1_555 U MN1 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 A O ALA 334 A ALA 344 1_555 U CA1 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc9 A OXT ALA 334 A ALA 344 1_555 U MN2 OEX . A OEX 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 U MN4 OEX . A OEX 401 1_555 JC O HOH . A HOH 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc11 U MN2 OEX . A OEX 401 1_555 C OE1 GLU 332 C GLU 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc12 V FE FE2 . A FE2 402 1_555 D NE2 HIS 203 D HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc13 V FE FE2 . A FE2 402 1_555 D NE2 HIS 257 D HIS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc14 V FE FE2 . A FE2 402 1_555 SB O1 BCT . D BCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc15 V FE FE2 . A FE2 402 1_555 SB O3 BCT . D BCT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc16 X MG CLA . A CLA 406 1_555 JC O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc17 Y MG CLA . A CLA 407 1_555 JC O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc18 GA MG CLA . B CLA 602 1_555 KC O HOH . B HOH 979 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc19 MA MG CLA . B CLA 608 1_555 KC O HOH . B HOH 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 PA MG CLA . B CLA 611 1_555 KC O HOH . B HOH 880 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc21 C OD1 ASN 17 C ASN 39 1_555 KB MG CLA . C CLA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc22 DB MG CLA . C CLA 504 1_555 LC O HOH . C HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc23 GB MG CLA . C CLA 507 1_555 LC O HOH . C HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc24 E NE2 HIS 23 E HIS 23 1_555 CC FE HEM . F HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc25 F NE2 HIS 24 F HIS 24 1_555 CC FE HEM . F HEM 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc26 P NE2 HIS 67 V HIS 41 1_555 IC FE HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc27 P NE2 HIS 118 V HIS 92 1_555 IC FE HEC . V HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C40 H56' _chem_comp.formula_weight 536.873 _chem_comp.id BCR _chem_comp.mon_nstd_flag . _chem_comp.name BETA-CAROTENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7EDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 21 OEX A 1 401 401 OEX OEX . V 22 FE2 A 1 402 402 FE2 FE2 . W 23 CLA A 1 405 405 CLA CLA . X 23 CLA A 1 406 406 CLA CLA . Y 23 CLA A 1 407 407 CLA CLA . Z 24 PHO A 1 408 408 PHO PHO . AA 24 PHO A 1 409 409 PHO PHO . BA 23 CLA A 1 410 410 CLA CLA . CA 25 BCR A 1 411 411 BCR BCR . DA 26 SQD A 1 412 412 SQD SQD . EA 27 LMG A 1 413 413 LMG LMG . FA 28 PL9 A 1 414 414 PL9 PL9 . GA 23 CLA B 1 602 602 CLA CLA . HA 23 CLA B 1 603 603 CLA CLA . IA 23 CLA B 1 604 604 CLA CLA . JA 23 CLA B 1 605 605 CLA CLA . KA 23 CLA B 1 606 606 CLA CLA . LA 23 CLA B 1 607 607 CLA CLA . MA 23 CLA B 1 608 608 CLA CLA . NA 23 CLA B 1 609 609 CLA CLA . OA 23 CLA B 1 610 610 CLA CLA . PA 23 CLA B 1 611 611 CLA CLA . QA 23 CLA B 1 612 612 CLA CLA . RA 23 CLA B 1 613 613 CLA CLA . SA 23 CLA B 1 614 614 CLA CLA . TA 23 CLA B 1 615 615 CLA CLA . UA 23 CLA B 1 616 616 CLA CLA . VA 23 CLA B 1 617 617 CLA CLA . WA 25 BCR B 1 618 618 BCR BCR . XA 29 UNL B 1 619 619 UNL UNL . YA 25 BCR B 1 620 620 BCR BCR . ZA 27 LMG B 1 622 622 LMG LMG . AB 23 CLA C 1 501 501 CLA CLA . BB 23 CLA C 1 502 502 CLA CLA . CB 23 CLA C 1 503 503 CLA CLA . DB 23 CLA C 1 504 504 CLA CLA . EB 23 CLA C 1 505 505 CLA CLA . FB 23 CLA C 1 506 506 CLA CLA . GB 23 CLA C 1 507 507 CLA CLA . HB 23 CLA C 1 508 508 CLA CLA . IB 23 CLA C 1 509 509 CLA CLA . JB 23 CLA C 1 510 510 CLA CLA . KB 23 CLA C 1 511 511 CLA CLA . LB 23 CLA C 1 512 512 CLA CLA . MB 23 CLA C 1 513 513 CLA CLA . NB 25 BCR C 1 514 514 BCR BCR . OB 25 BCR C 1 515 515 BCR BCR . PB 30 DGD C 1 516 516 DGD DGD . QB 30 DGD C 1 517 517 DGD DGD . RB 30 DGD C 1 518 518 DGD DGD . SB 31 BCT D 1 401 401 BCT BCT . TB 23 CLA D 1 402 402 CLA CLA . UB 23 CLA D 1 403 403 CLA CLA . VB 25 BCR D 1 404 404 BCR BCR . WB 28 PL9 D 1 405 405 PL9 PL9 . XB 26 SQD D 1 407 407 SQD SQD . YB 32 LHG D 1 408 408 LHG LHG . ZB 32 LHG D 1 409 409 LHG LHG . AC 32 LHG D 1 410 410 LHG LHG . BC 27 LMG D 1 411 411 LMG LMG . CC 33 HEM F 1 101 101 HEM HEM . DC 34 RRX H 1 101 101 RRX RRX . EC 30 DGD H 1 102 102 DGD DGD . FC 25 BCR K 1 101 101 BCR BCR . GC 25 BCR K 1 102 102 BCR BCR . HC 32 LHG L 1 101 101 LHG LHG . IC 35 HEC V 1 201 201 HEC HEM . JC 36 HOH A 1 510 510 HOH HOH . JC 36 HOH A 2 513 513 HOH HOH . JC 36 HOH A 3 552 552 HOH HOH . JC 36 HOH A 4 565 565 HOH HOH . JC 36 HOH A 5 595 595 HOH HOH . JC 36 HOH A 6 645 645 HOH HOH . JC 36 HOH A 7 659 659 HOH HOH . KC 36 HOH B 1 715 715 HOH HOH . KC 36 HOH B 2 843 843 HOH HOH . KC 36 HOH B 3 880 880 HOH HOH . KC 36 HOH B 4 957 957 HOH HOH . KC 36 HOH B 5 979 979 HOH HOH . LC 36 HOH C 1 629 629 HOH HOH . LC 36 HOH C 2 638 638 HOH HOH . LC 36 HOH C 3 694 694 HOH HOH . LC 36 HOH C 4 744 744 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BCR . . . CA 25 90.152 87.501 137.384 1 23.39 ? C1 BCR 411 A 1 HETATM 2 C C2 BCR . . . CA 25 90.304 86.003 137.564 1 23.39 ? C2 BCR 411 A 1 HETATM 3 C C3 BCR . . . CA 25 90.183 85.58 139.011 1 23.39 ? C3 BCR 411 A 1 HETATM 4 C C4 BCR . . . CA 25 91.294 86.246 139.787 1 23.39 ? C4 BCR 411 A 1 HETATM 5 C C5 BCR . . . CA 25 91.133 87.74 139.691 1 23.39 ? C5 BCR 411 A 1 HETATM 6 C C6 BCR . . . CA 25 90.617 88.323 138.587 1 23.39 ? C6 BCR 411 A 1 HETATM 7 C C7 BCR . . . CA 25 90.454 89.803 138.511 1 23.39 ? C7 BCR 411 A 1 HETATM 8 C C8 BCR . . . CA 25 91.436 90.628 138.121 1 23.39 ? C8 BCR 411 A 1 HETATM 9 C C9 BCR . . . CA 25 91.284 92.085 138.028 1 23.39 ? C9 BCR 411 A 1 HETATM 10 C C10 BCR . . . CA 25 92.39 92.77 137.737 1 23.39 ? C10 BCR 411 A 1 HETATM 11 C C11 BCR . . . CA 25 92.446 94.213 137.587 1 23.39 ? C11 BCR 411 A 1 HETATM 12 C C33 BCR . . . CA 25 91.578 88.516 140.901 1 23.39 ? C33 BCR 411 A 1 HETATM 13 C C31 BCR . . . CA 25 88.678 87.825 137.191 1 23.39 ? C31 BCR 411 A 1 HETATM 14 C C32 BCR . . . CA 25 90.901 87.824 136.099 1 23.39 ? C32 BCR 411 A 1 HETATM 15 C C34 BCR . . . CA 25 89.962 92.759 138.244 1 23.39 ? C34 BCR 411 A 1 HETATM 16 C C12 BCR . . . CA 25 93.648 94.709 137.338 1 23.39 ? C12 BCR 411 A 1 HETATM 17 C C13 BCR . . . CA 25 93.872 96.142 137.138 1 23.39 ? C13 BCR 411 A 1 HETATM 18 C C14 BCR . . . CA 25 95.106 96.554 136.832 1 23.39 ? C14 BCR 411 A 1 HETATM 19 C C15 BCR . . . CA 25 95.374 97.961 136.594 1 23.39 ? C15 BCR 411 A 1 HETATM 20 C C16 BCR . . . CA 25 96.613 98.417 136.556 1 23.39 ? C16 BCR 411 A 1 HETATM 21 C C17 BCR . . . CA 25 96.793 99.83 136.276 1 23.39 ? C17 BCR 411 A 1 HETATM 22 C C18 BCR . . . CA 25 97.941 100.275 135.767 1 23.39 ? C18 BCR 411 A 1 HETATM 23 C C19 BCR . . . CA 25 98.058 101.708 135.478 1 23.39 ? C19 BCR 411 A 1 HETATM 24 C C20 BCR . . . CA 25 99.218 102.273 135.192 1 23.39 ? C20 BCR 411 A 1 HETATM 25 C C21 BCR . . . CA 25 99.167 103.7 134.925 1 23.39 ? C21 BCR 411 A 1 HETATM 26 C C22 BCR . . . CA 25 100.039 104.55 135.465 1 23.39 ? C22 BCR 411 A 1 HETATM 27 C C23 BCR . . . CA 25 99.892 105.847 135.186 1 23.39 ? C23 BCR 411 A 1 HETATM 28 C C24 BCR . . . CA 25 100.898 106.734 135.177 1 23.39 ? C24 BCR 411 A 1 HETATM 29 C C25 BCR . . . CA 25 100.675 108.177 134.875 1 23.39 ? C25 BCR 411 A 1 HETATM 30 C C26 BCR . . . CA 25 100.515 108.639 133.611 1 23.39 ? C26 BCR 411 A 1 HETATM 31 C C27 BCR . . . CA 25 100.296 110.101 133.343 1 23.39 ? C27 BCR 411 A 1 HETATM 32 C C28 BCR . . . CA 25 99.734 110.82 134.548 1 23.39 ? C28 BCR 411 A 1 HETATM 33 C C29 BCR . . . CA 25 100.697 110.587 135.685 1 23.39 ? C29 BCR 411 A 1 HETATM 34 C C30 BCR . . . CA 25 100.656 109.12 136.077 1 23.39 ? C30 BCR 411 A 1 HETATM 35 C C35 BCR . . . CA 25 92.73 97.106 137.261 1 23.39 ? C35 BCR 411 A 1 HETATM 36 C C36 BCR . . . CA 25 99.072 99.331 135.502 1 23.39 ? C36 BCR 411 A 1 HETATM 37 C C37 BCR . . . CA 25 101.106 104.07 136.404 1 23.39 ? C37 BCR 411 A 1 HETATM 38 C C38 BCR . . . CA 25 100.538 107.77 132.379 1 23.39 ? C38 BCR 411 A 1 HETATM 39 C C39 BCR . . . CA 25 99.398 108.905 136.915 1 23.39 ? C39 BCR 411 A 1 HETATM 40 C C40 BCR . . . CA 25 101.896 108.844 136.912 1 23.39 ? C40 BCR 411 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #