data_7EEK # _model_server_result.job_id GlyNZChHiTOJxzlBjBwfeA _model_server_result.datetime_utc '2024-11-13 04:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":605}' # _entry.id 7EEK # _exptl.entry_id 7EEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITOLEIC ACID' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.21 _cell.angle_beta 89.68 _cell.angle_gamma 100.1 _cell.entry_id 7EEK _cell.length_a 38.187 _cell.length_b 92.207 _cell.length_c 95.435 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I 1 1 B,J,K,L,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 53 1_555 A SG CYS 61 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 74 A CYS 75 1_555 A SG CYS 90 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 89 A CYS 90 1_555 A SG CYS 100 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 123 A CYS 124 1_555 A SG CYS 168 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf5 A SG CYS 167 A CYS 168 1_555 A SG CYS 176 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 A SG CYS 199 A CYS 200 1_555 A SG CYS 245 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf7 A SG CYS 244 A CYS 245 1_555 A SG CYS 252 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 264 A CYS 265 1_555 A SG CYS 278 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf9 A SG CYS 277 A CYS 278 1_555 A SG CYS 288 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 A SG CYS 315 A CYS 316 1_555 A SG CYS 360 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 A SG CYS 359 A CYS 360 1_555 A SG CYS 368 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf12 A SG CYS 391 A CYS 392 1_555 A SG CYS 437 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 A SG CYS 436 A CYS 437 1_555 A SG CYS 447 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf14 A SG CYS 460 A CYS 461 1_555 A SG CYS 476 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf15 A SG CYS 475 A CYS 476 1_555 A SG CYS 486 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf16 A SG CYS 513 A CYS 514 1_555 A SG CYS 558 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf17 A SG CYS 557 A CYS 558 1_555 A SG CYS 566 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf18 B SG CYS 52 B CYS 53 1_555 B SG CYS 61 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf19 B SG CYS 74 B CYS 75 1_555 B SG CYS 90 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf20 B SG CYS 89 B CYS 90 1_555 B SG CYS 100 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf21 B SG CYS 123 B CYS 124 1_555 B SG CYS 168 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf22 B SG CYS 167 B CYS 168 1_555 B SG CYS 176 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf23 B SG CYS 199 B CYS 200 1_555 B SG CYS 245 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf24 B SG CYS 244 B CYS 245 1_555 B SG CYS 252 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf25 B SG CYS 264 B CYS 265 1_555 B SG CYS 278 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf26 B SG CYS 277 B CYS 278 1_555 B SG CYS 288 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf27 B SG CYS 315 B CYS 316 1_555 B SG CYS 360 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf28 B SG CYS 359 B CYS 360 1_555 B SG CYS 368 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf29 B SG CYS 391 B CYS 392 1_555 B SG CYS 437 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 B SG CYS 436 B CYS 437 1_555 B SG CYS 447 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf31 B SG CYS 460 B CYS 461 1_555 B SG CYS 476 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf32 B SG CYS 475 B CYS 476 1_555 B SG CYS 486 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf33 B SG CYS 513 B CYS 514 1_555 B SG CYS 558 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf34 B SG CYS 557 B CYS 558 1_555 B SG CYS 566 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A NE2 HIS 145 A HIS 146 1_555 I AU1 J2O . A J2O 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 B NE2 HIS 145 B HIS 146 1_555 P AU1 J2O . B J2O 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C16 H30 O2' _chem_comp.formula_weight 254.408 _chem_comp.id PAM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITOLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PAM sing 262 n n C1 O2 PAM doub 263 n n C1 C2 PAM sing 264 n n O1 HO1 PAM sing 265 n n C2 C3 PAM sing 266 n n C2 H21 PAM sing 267 n n C2 H22 PAM sing 268 n n C3 C4 PAM sing 269 n n C3 H31 PAM sing 270 n n C3 H32 PAM sing 271 n n C4 C5 PAM sing 272 n n C4 H41 PAM sing 273 n n C4 H42 PAM sing 274 n n C5 C6 PAM sing 275 n n C5 H51 PAM sing 276 n n C5 H52 PAM sing 277 n n C6 C7 PAM sing 278 n n C6 H61 PAM sing 279 n n C6 H62 PAM sing 280 n n C7 C8 PAM sing 281 n n C7 H71 PAM sing 282 n n C7 H72 PAM sing 283 n n C8 C9 PAM sing 284 n n C8 H81 PAM sing 285 n n C8 H82 PAM sing 286 n n C9 C10 PAM doub 287 z n C9 H9 PAM sing 288 n n C10 C11 PAM sing 289 n n C10 H10 PAM sing 290 n n C11 C12 PAM sing 291 n n C11 H111 PAM sing 292 n n C11 H112 PAM sing 293 n n C12 C13 PAM sing 294 n n C12 H121 PAM sing 295 n n C12 H122 PAM sing 296 n n C13 C14 PAM sing 297 n n C13 H131 PAM sing 298 n n C13 H132 PAM sing 299 n n C14 C15 PAM sing 300 n n C14 H141 PAM sing 301 n n C14 H142 PAM sing 302 n n C15 C16 PAM sing 303 n n C15 H151 PAM sing 304 n n C15 H152 PAM sing 305 n n C16 H161 PAM sing 306 n n C16 H162 PAM sing 307 n n C16 H163 PAM sing 308 n n # _atom_sites.entry_id 7EEK _atom_sites.fract_transf_matrix[1][1] 0.026187 _atom_sites.fract_transf_matrix[1][2] 0.004665 _atom_sites.fract_transf_matrix[1][3] 0.001133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011016 _atom_sites.fract_transf_matrix[2][3] 0.003034 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PAM A 1 601 1 PAM PAL . D 2 PAM A 1 602 2 PAM PAL . E 2 PAM A 1 603 3 PAM PAL . F 2 PAM A 1 604 4 PAM PAL . G 2 PAM A 1 605 5 PAM PAL . H 2 PAM A 1 606 8 PAM PAL . I 3 J2O A 1 607 1 J2O HAU . J 2 PAM B 1 601 7 PAM PAL . K 2 PAM B 1 602 9 PAM PAL . L 2 PAM B 1 603 10 PAM PAL . M 2 PAM B 1 604 11 PAM PAL . N 2 PAM B 1 605 12 PAM PAL . O 2 PAM B 1 606 13 PAM PAL . P 3 J2O B 1 607 2 J2O HAU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PAM . . . N 2 -20.633 63.633 75.037 1 58.83 ? C1 PAM 605 B 1 HETATM 2 O O1 PAM . . . N 2 -20.624 64.84 74.671 1 57.23 ? O1 PAM 605 B 1 HETATM 3 O O2 PAM . . . N 2 -20.373 63.41 76.249 1 57.58 ? O2 PAM 605 B 1 HETATM 4 C C2 PAM . . . N 2 -20.518 62.554 73.991 1 58.09 ? C2 PAM 605 B 1 HETATM 5 C C3 PAM . . . N 2 -21.16 61.207 74.172 1 56.83 ? C3 PAM 605 B 1 HETATM 6 C C4 PAM . . . N 2 -21.29 60.72 75.585 1 58.87 ? C4 PAM 605 B 1 HETATM 7 C C5 PAM . . . N 2 -21.412 59.281 75.893 1 60.36 ? C5 PAM 605 B 1 HETATM 8 C C6 PAM . . . N 2 -22.043 58.338 74.91 1 61.03 ? C6 PAM 605 B 1 HETATM 9 C C7 PAM . . . N 2 -21.213 57.565 73.942 1 60.65 ? C7 PAM 605 B 1 HETATM 10 C C8 PAM . . . N 2 -19.896 56.907 74.285 1 59.53 ? C8 PAM 605 B 1 HETATM 11 C C9 PAM . . . N 2 -18.812 57.008 73.207 1 57.6 ? C9 PAM 605 B 1 HETATM 12 C C10 PAM . . . N 2 -18.68 55.871 72.221 1 57.67 ? C10 PAM 605 B 1 HETATM 13 C C11 PAM . . . N 2 -18.261 56.163 70.787 1 54.69 ? C11 PAM 605 B 1 HETATM 14 C C12 PAM . . . N 2 -16.796 56.266 70.513 1 53.29 ? C12 PAM 605 B 1 HETATM 15 C C13 PAM . . . N 2 -16.388 56.359 69.089 1 52.38 ? C13 PAM 605 B 1 HETATM 16 C C14 PAM . . . N 2 -14.938 56.496 68.813 1 52.22 ? C14 PAM 605 B 1 HETATM 17 C C15 PAM . . . N 2 -14.177 55.279 68.428 1 54.1 ? C15 PAM 605 B 1 HETATM 18 C C16 PAM . . . N 2 -12.96 54.933 69.222 1 54.82 ? C16 PAM 605 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 18 #