data_7EEK # _model_server_result.job_id 3gSPf_UWM098TLT2JGyRWQ _model_server_result.datetime_utc '2024-11-13 04:57:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":607}' # _entry.id 7EEK # _exptl.entry_id 7EEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.227 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 11-methyl-2-oxa-4-thia-6,7-diaza-3$l^{3}-auratricyclo[7.4.0.0^{3,7}]trideca-1(13),5,9,11-tetraen-5-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.21 _cell.angle_beta 89.68 _cell.angle_gamma 100.1 _cell.entry_id 7EEK _cell.length_a 38.187 _cell.length_b 92.207 _cell.length_c 95.435 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I 1 1 B,J,K,L,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 53 1_555 A SG CYS 61 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 74 A CYS 75 1_555 A SG CYS 90 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 89 A CYS 90 1_555 A SG CYS 100 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 123 A CYS 124 1_555 A SG CYS 168 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf5 A SG CYS 167 A CYS 168 1_555 A SG CYS 176 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 A SG CYS 199 A CYS 200 1_555 A SG CYS 245 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf7 A SG CYS 244 A CYS 245 1_555 A SG CYS 252 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 264 A CYS 265 1_555 A SG CYS 278 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf9 A SG CYS 277 A CYS 278 1_555 A SG CYS 288 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 A SG CYS 315 A CYS 316 1_555 A SG CYS 360 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 A SG CYS 359 A CYS 360 1_555 A SG CYS 368 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf12 A SG CYS 391 A CYS 392 1_555 A SG CYS 437 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 A SG CYS 436 A CYS 437 1_555 A SG CYS 447 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf14 A SG CYS 460 A CYS 461 1_555 A SG CYS 476 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf15 A SG CYS 475 A CYS 476 1_555 A SG CYS 486 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf16 A SG CYS 513 A CYS 514 1_555 A SG CYS 558 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf17 A SG CYS 557 A CYS 558 1_555 A SG CYS 566 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf18 B SG CYS 52 B CYS 53 1_555 B SG CYS 61 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf19 B SG CYS 74 B CYS 75 1_555 B SG CYS 90 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf20 B SG CYS 89 B CYS 90 1_555 B SG CYS 100 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf21 B SG CYS 123 B CYS 124 1_555 B SG CYS 168 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf22 B SG CYS 167 B CYS 168 1_555 B SG CYS 176 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf23 B SG CYS 199 B CYS 200 1_555 B SG CYS 245 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf24 B SG CYS 244 B CYS 245 1_555 B SG CYS 252 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf25 B SG CYS 264 B CYS 265 1_555 B SG CYS 278 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf26 B SG CYS 277 B CYS 278 1_555 B SG CYS 288 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf27 B SG CYS 315 B CYS 316 1_555 B SG CYS 360 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf28 B SG CYS 359 B CYS 360 1_555 B SG CYS 368 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf29 B SG CYS 391 B CYS 392 1_555 B SG CYS 437 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 B SG CYS 436 B CYS 437 1_555 B SG CYS 447 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf31 B SG CYS 460 B CYS 461 1_555 B SG CYS 476 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf32 B SG CYS 475 B CYS 476 1_555 B SG CYS 486 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf33 B SG CYS 513 B CYS 514 1_555 B SG CYS 558 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf34 B SG CYS 557 B CYS 558 1_555 B SG CYS 566 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A NE2 HIS 145 A HIS 146 1_555 I AU1 J2O . A J2O 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 B NE2 HIS 145 B HIS 146 1_555 P AU1 J2O . B J2O 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C9 H10 Au N3 O S' _chem_comp.formula_weight 405.227 _chem_comp.id J2O _chem_comp.mon_nstd_flag . _chem_comp.name 11-methyl-2-oxa-4-thia-6,7-diaza-3$l^{3}-auratricyclo[7.4.0.0^{3,7}]trideca-1(13),5,9,11-tetraen-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C13 J2O sing 171 n n C13 N6 J2O doub 172 n n C13 S3 J2O sing 173 n n N6 N2 J2O sing 174 n n S3 AU1 J2O sing 175 n n N2 C11 J2O sing 176 n n N2 AU1 J2O sing 177 n n C11 C25 J2O sing 178 n n AU1 O1 J2O sing 179 n n C25 C12 J2O doub 180 n y C25 C10 J2O sing 181 n y C12 C3 J2O sing 182 n y O1 C10 J2O sing 183 n n C10 C4 J2O doub 184 n y C3 C9 J2O sing 185 n n C3 C17 J2O doub 186 n y C4 C17 J2O sing 187 n y C4 H1 J2O sing 188 n n C9 H2 J2O sing 189 n n C9 H3 J2O sing 190 n n C9 H4 J2O sing 191 n n C11 H5 J2O sing 192 n n C12 H6 J2O sing 193 n n N7 H9 J2O sing 194 n n N7 H10 J2O sing 195 n n C17 H12 J2O sing 196 n n C11 H13 J2O sing 197 n n # _atom_sites.entry_id 7EEK _atom_sites.fract_transf_matrix[1][1] 0.026187 _atom_sites.fract_transf_matrix[1][2] 0.004665 _atom_sites.fract_transf_matrix[1][3] 0.001133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011016 _atom_sites.fract_transf_matrix[2][3] 0.003034 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PAM A 1 601 1 PAM PAL . D 2 PAM A 1 602 2 PAM PAL . E 2 PAM A 1 603 3 PAM PAL . F 2 PAM A 1 604 4 PAM PAL . G 2 PAM A 1 605 5 PAM PAL . H 2 PAM A 1 606 8 PAM PAL . I 3 J2O A 1 607 1 J2O HAU . J 2 PAM B 1 601 7 PAM PAL . K 2 PAM B 1 602 9 PAM PAL . L 2 PAM B 1 603 10 PAM PAL . M 2 PAM B 1 604 11 PAM PAL . N 2 PAM B 1 605 12 PAM PAL . O 2 PAM B 1 606 13 PAM PAL . P 3 J2O B 1 607 2 J2O HAU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 J2O . . . P 3 -22.608 35.131 63.147 1 152.88 ? O1 J2O 607 B 1 HETATM 2 N N2 J2O . . . P 3 -23.113 35.643 60.272 1 156.53 ? N2 J2O 607 B 1 HETATM 3 C C3 J2O . . . P 3 -26.734 34.95 63.439 1 121.85 ? C3 J2O 607 B 1 HETATM 4 C C4 J2O . . . P 3 -24.521 34.72 64.373 1 127.04 ? C4 J2O 607 B 1 HETATM 5 C C9 J2O . . . P 3 -28.231 34.848 63.655 1 121.18 ? C9 J2O 607 B 1 HETATM 6 C C10 J2O . . . P 3 -23.941 35.105 63.157 1 136.52 ? C10 J2O 607 B 1 HETATM 7 C C11 J2O . . . P 3 -24.311 35.81 60.792 1 143.29 ? C11 J2O 607 B 1 HETATM 8 C C12 J2O . . . P 3 -26.183 35.327 62.245 1 123.25 ? C12 J2O 607 B 1 HETATM 9 C C13 J2O . . . P 3 -21.626 35.964 58.634 1 153.09 ? C13 J2O 607 B 1 HETATM 10 S S3 J2O . . . P 3 -20.479 34.927 59.45 1 146.57 ? S3 J2O 607 B 1 HETATM 11 N N6 J2O . . . P 3 -22.818 36.244 59.067 1 156.21 ? N6 J2O 607 B 1 HETATM 12 N N7 J2O . . . P 3 -21.186 36.487 57.459 1 147.5 ? N7 J2O 607 B 1 HETATM 13 C C17 J2O . . . P 3 -25.87 34.644 64.501 1 123.56 ? C17 J2O 607 B 1 HETATM 14 C C25 J2O . . . P 3 -24.776 35.481 62.088 1 133.32 ? C25 J2O 607 B 1 HETATM 15 AU AU1 J2O . . . P 3 -21.557 35.084 61.405 1 183.11 ? AU1 J2O 607 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #