data_7EEK
#
_model_server_result.job_id            Sdhz9IRp5QV9AHfCbHNfhQ 
_model_server_result.datetime_utc      '2024-11-26 16:55:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7eek 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":607}' 
#
_entry.id    7EEK 
#
_exptl.entry_id    7EEK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              405.227 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            11-methyl-2-oxa-4-thia-6,7-diaza-3$l^{3}-auratricyclo[7.4.0.0^{3,7}]trideca-1(13),5,9,11-tetraen-5-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         105.21 
_cell.angle_beta          89.68 
_cell.angle_gamma         100.1 
_cell.entry_id            7EEK 
_cell.length_a            38.187 
_cell.length_b            92.207 
_cell.length_c            95.435 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EEK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I 1 1 
B,J,K,L,M,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 52 A CYS 53 1_555 A SG CYS 61 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 74 A CYS 75 1_555 A SG CYS 90 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 89 A CYS 90 1_555 A SG CYS 100 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 A SG CYS 123 A CYS 124 1_555 A SG CYS 168 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf5 A SG CYS 167 A CYS 168 1_555 A SG CYS 176 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf6 A SG CYS 199 A CYS 200 1_555 A SG CYS 245 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf7 A SG CYS 244 A CYS 245 1_555 A SG CYS 252 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 A SG CYS 264 A CYS 265 1_555 A SG CYS 278 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf9 A SG CYS 277 A CYS 278 1_555 A SG CYS 288 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf10 A SG CYS 315 A CYS 316 1_555 A SG CYS 360 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 A SG CYS 359 A CYS 360 1_555 A SG CYS 368 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf12 A SG CYS 391 A CYS 392 1_555 A SG CYS 437 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf13 A SG CYS 436 A CYS 437 1_555 A SG CYS 447 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf14 A SG CYS 460 A CYS 461 1_555 A SG CYS 476 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf15 A SG CYS 475 A CYS 476 1_555 A SG CYS 486 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf16 A SG CYS 513 A CYS 514 1_555 A SG CYS 558 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf17 A SG CYS 557 A CYS 558 1_555 A SG CYS 566 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf18 B SG CYS 52 B CYS 53 1_555 B SG CYS 61 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf19 B SG CYS 74 B CYS 75 1_555 B SG CYS 90 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf20 B SG CYS 89 B CYS 90 1_555 B SG CYS 100 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf21 B SG CYS 123 B CYS 124 1_555 B SG CYS 168 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf22 B SG CYS 167 B CYS 168 1_555 B SG CYS 176 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf23 B SG CYS 199 B CYS 200 1_555 B SG CYS 245 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf24 B SG CYS 244 B CYS 245 1_555 B SG CYS 252 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf25 B SG CYS 264 B CYS 265 1_555 B SG CYS 278 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf26 B SG CYS 277 B CYS 278 1_555 B SG CYS 288 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf27 B SG CYS 315 B CYS 316 1_555 B SG CYS 360 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf28 B SG CYS 359 B CYS 360 1_555 B SG CYS 368 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf29 B SG CYS 391 B CYS 392 1_555 B SG CYS 437 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf30 B SG CYS 436 B CYS 437 1_555 B SG CYS 447 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf31 B SG CYS 460 B CYS 461 1_555 B SG CYS 476 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf32 B SG CYS 475 B CYS 476 1_555 B SG CYS 486 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf33 B SG CYS 513 B CYS 514 1_555 B SG CYS 558 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf34 B SG CYS 557 B CYS 558 1_555 B SG CYS 566 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A NE2 HIS 145 A HIS 146 1_555 I AU1 J2O . A J2O 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc2 B NE2 HIS 145 B HIS 146 1_555 P AU1 J2O . B J2O 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
#
_chem_comp.formula           'C9 H10 Au N3 O S' 
_chem_comp.formula_weight    405.227 
_chem_comp.id                J2O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              11-methyl-2-oxa-4-thia-6,7-diaza-3$l^{3}-auratricyclo[7.4.0.0^{3,7}]trideca-1(13),5,9,11-tetraen-5-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C13 J2O sing 171 n n 
C13 N6 J2O doub 172 n n 
C13 S3 J2O sing 173 n n 
N6 N2 J2O sing 174 n n 
S3 AU1 J2O sing 175 n n 
N2 C11 J2O sing 176 n n 
N2 AU1 J2O sing 177 n n 
C11 C25 J2O sing 178 n n 
AU1 O1 J2O sing 179 n n 
C25 C12 J2O doub 180 n y 
C25 C10 J2O sing 181 n y 
C12 C3 J2O sing 182 n y 
O1 C10 J2O sing 183 n n 
C10 C4 J2O doub 184 n y 
C3 C9 J2O sing 185 n n 
C3 C17 J2O doub 186 n y 
C4 C17 J2O sing 187 n y 
C4 H1 J2O sing 188 n n 
C9 H2 J2O sing 189 n n 
C9 H3 J2O sing 190 n n 
C9 H4 J2O sing 191 n n 
C11 H5 J2O sing 192 n n 
C12 H6 J2O sing 193 n n 
N7 H9 J2O sing 194 n n 
N7 H10 J2O sing 195 n n 
C17 H12 J2O sing 196 n n 
C11 H13 J2O sing 197 n n 
#
_atom_sites.entry_id                     7EEK 
_atom_sites.fract_transf_matrix[1][1]    0.026187 
_atom_sites.fract_transf_matrix[1][2]    0.004665 
_atom_sites.fract_transf_matrix[1][3]    0.001133 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011016 
_atom_sites.fract_transf_matrix[2][3]    0.003034 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010869 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PAM A 1 601 1 PAM PAL . 
D 2 PAM A 1 602 2 PAM PAL . 
E 2 PAM A 1 603 3 PAM PAL . 
F 2 PAM A 1 604 4 PAM PAL . 
G 2 PAM A 1 605 5 PAM PAL . 
H 2 PAM A 1 606 8 PAM PAL . 
I 3 J2O A 1 607 1 J2O HAU . 
J 2 PAM B 1 601 7 PAM PAL . 
K 2 PAM B 1 602 9 PAM PAL . 
L 2 PAM B 1 603 10 PAM PAL . 
M 2 PAM B 1 604 11 PAM PAL . 
N 2 PAM B 1 605 12 PAM PAL . 
O 2 PAM B 1 606 13 PAM PAL . 
P 3 J2O B 1 607 2 J2O HAU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 J2O . . . P 3 -22.608 35.131 63.147 1 152.88 ? O1 J2O 607 B 1 
HETATM 2 N N2 J2O . . . P 3 -23.113 35.643 60.272 1 156.53 ? N2 J2O 607 B 1 
HETATM 3 C C3 J2O . . . P 3 -26.734 34.95 63.439 1 121.85 ? C3 J2O 607 B 1 
HETATM 4 C C4 J2O . . . P 3 -24.521 34.72 64.373 1 127.04 ? C4 J2O 607 B 1 
HETATM 5 C C9 J2O . . . P 3 -28.231 34.848 63.655 1 121.18 ? C9 J2O 607 B 1 
HETATM 6 C C10 J2O . . . P 3 -23.941 35.105 63.157 1 136.52 ? C10 J2O 607 B 1 
HETATM 7 C C11 J2O . . . P 3 -24.311 35.81 60.792 1 143.29 ? C11 J2O 607 B 1 
HETATM 8 C C12 J2O . . . P 3 -26.183 35.327 62.245 1 123.25 ? C12 J2O 607 B 1 
HETATM 9 C C13 J2O . . . P 3 -21.626 35.964 58.634 1 153.09 ? C13 J2O 607 B 1 
HETATM 10 S S3 J2O . . . P 3 -20.479 34.927 59.45 1 146.57 ? S3 J2O 607 B 1 
HETATM 11 N N6 J2O . . . P 3 -22.818 36.244 59.067 1 156.21 ? N6 J2O 607 B 1 
HETATM 12 N N7 J2O . . . P 3 -21.186 36.487 57.459 1 147.5 ? N7 J2O 607 B 1 
HETATM 13 C C17 J2O . . . P 3 -25.87 34.644 64.501 1 123.56 ? C17 J2O 607 B 1 
HETATM 14 C C25 J2O . . . P 3 -24.776 35.481 62.088 1 133.32 ? C25 J2O 607 B 1 
HETATM 15 AU AU1 J2O . . . P 3 -21.557 35.084 61.405 1 183.11 ? AU1 J2O 607 B 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           1137 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           15 
#