data_7EER # _model_server_result.job_id skRwIjjKJ5hNijj9oyogxg _model_server_result.datetime_utc '2024-11-23 19:03:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 7EER # _exptl.entry_id 7EER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EER _cell.length_a 87.627 _cell.length_b 87.595 _cell.length_c 217.084 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EER _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1,2 B,G,H 2 1,3 C,D,I,J,K,L 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 217.084 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7EER _atom_sites.fract_transf_matrix[1][1] 0.011412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 401 2 ATP ATP . F 3 ZCW A 1 402 3 ZCW UE6 . G 2 ATP B 1 401 1 ATP ATP . H 3 ZCW B 1 402 1 ZCW UE6 . I 2 ATP C 1 401 4 ATP ATP . J 3 ZCW C 1 402 4 ZCW UE6 . K 2 ATP D 1 401 3 ATP ATP . L 3 ZCW D 1 402 2 ZCW UE6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 2 19.361 -49.353 72.713 1 43.81 ? PG ATP 401 C 1 HETATM 2 O O1G ATP . . . I 2 19.958 -48.019 72.685 1 13.9 ? O1G ATP 401 C 1 HETATM 3 O O2G ATP . . . I 2 18.329 -49.255 73.743 1 29.93 ? O2G ATP 401 C 1 HETATM 4 O O3G ATP . . . I 2 18.614 -49.427 71.454 1 35.58 ? O3G ATP 401 C 1 HETATM 5 P PB ATP . . . I 2 20.074 -52.145 73.385 1 16.43 ? PB ATP 401 C 1 HETATM 6 O O1B ATP . . . I 2 18.761 -52.534 72.898 1 17.74 ? O1B ATP 401 C 1 HETATM 7 O O2B ATP . . . I 2 19.852 -52.223 74.826 1 17.2 ? O2B ATP 401 C 1 HETATM 8 O O3B ATP . . . I 2 20.463 -50.603 72.926 1 15.67 ? O3B ATP 401 C 1 HETATM 9 P PA ATP . . . I 2 21.945 -53.193 71.345 1 11.64 ? PA ATP 401 C 1 HETATM 10 O O1A ATP . . . I 2 21.13 -52.447 70.401 1 10.46 ? O1A ATP 401 C 1 HETATM 11 O O2A ATP . . . I 2 23.152 -52.39 71.315 1 9.68 ? O2A ATP 401 C 1 HETATM 12 O O3A ATP . . . I 2 21.255 -53.216 72.86 1 15.84 ? O3A ATP 401 C 1 HETATM 13 O O5' ATP . . . I 2 22.223 -54.727 70.8 1 10.15 ? O5' ATP 401 C 1 HETATM 14 C C5' ATP . . . I 2 23.432 -55.377 71.153 1 10.91 ? C5' ATP 401 C 1 HETATM 15 C C4' ATP . . . I 2 23.208 -56.771 71.615 1 12.8 ? C4' ATP 401 C 1 HETATM 16 O O4' ATP . . . I 2 22.465 -56.771 72.93 1 9.55 ? O4' ATP 401 C 1 HETATM 17 C C3' ATP . . . I 2 22.435 -57.564 70.624 1 11.77 ? C3' ATP 401 C 1 HETATM 18 O O3' ATP . . . I 2 23.335 -58.548 70.035 1 10.58 ? O3' ATP 401 C 1 HETATM 19 C C2' ATP . . . I 2 21.332 -58.217 71.315 1 16.4 ? C2' ATP 401 C 1 HETATM 20 O O2' ATP . . . I 2 20.073 -57.784 70.718 1 16.7 ? O2' ATP 401 C 1 HETATM 21 C C1' ATP . . . I 2 21.446 -57.882 72.766 1 8.67 ? C1' ATP 401 C 1 HETATM 22 N N9 ATP . . . I 2 20.282 -57.471 73.485 1 12.35 ? N9 ATP 401 C 1 HETATM 23 C C8 ATP . . . I 2 19.845 -56.271 73.489 1 10.84 ? C8 ATP 401 C 1 HETATM 24 N N7 ATP . . . I 2 18.77 -56.246 74.311 1 9.84 ? N7 ATP 401 C 1 HETATM 25 C C5 ATP . . . I 2 18.613 -57.551 74.823 1 10.95 ? C5 ATP 401 C 1 HETATM 26 C C6 ATP . . . I 2 17.722 -58.19 75.701 1 11.63 ? C6 ATP 401 C 1 HETATM 27 N N6 ATP . . . I 2 16.617 -57.438 76.323 1 9.69 ? N6 ATP 401 C 1 HETATM 28 N N1 ATP . . . I 2 17.878 -59.474 75.967 1 11.4 ? N1 ATP 401 C 1 HETATM 29 C C2 ATP . . . I 2 18.884 -60.174 75.403 1 10.8 ? C2 ATP 401 C 1 HETATM 30 N N3 ATP . . . I 2 19.755 -59.591 74.558 1 9.15 ? N3 ATP 401 C 1 HETATM 31 C C4 ATP . . . I 2 19.654 -58.297 74.246 1 10.61 ? C4 ATP 401 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #