data_7EER
#
_model_server_result.job_id            VeMPYgDnhvWdEgTXgpBYkQ 
_model_server_result.datetime_utc      '2024-11-01 21:35:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7eer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    7EER 
#
_exptl.entry_id    7EER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7EER 
_cell.length_a            87.627 
_cell.length_b            87.595 
_cell.length_c            217.084 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1,2 
B,G,H 2 1,3 
C,D,I,J,K,L 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 217.084 
3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7EER 
_atom_sites.fract_transf_matrix[1][1]    0.011412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 401 2 ATP ATP . 
F 3 ZCW A 1 402 3 ZCW UE6 . 
G 2 ATP B 1 401 1 ATP ATP . 
H 3 ZCW B 1 402 1 ZCW UE6 . 
I 2 ATP C 1 401 4 ATP ATP . 
J 3 ZCW C 1 402 4 ZCW UE6 . 
K 2 ATP D 1 401 3 ATP ATP . 
L 3 ZCW D 1 402 2 ZCW UE6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 2 19.365 -38.025 35.891 1 46.84 ? PG ATP 401 D 1 
HETATM 2 O O1G ATP . . . K 2 19.918 -39.38 35.887 1 15.76 ? O1G ATP 401 D 1 
HETATM 3 O O2G ATP . . . K 2 18.282 -38.081 34.911 1 31.65 ? O2G ATP 401 D 1 
HETATM 4 O O3G ATP . . . K 2 18.682 -37.925 37.183 1 38.07 ? O3G ATP 401 D 1 
HETATM 5 P PB ATP . . . K 2 20.101 -35.263 35.156 1 16.82 ? PB ATP 401 D 1 
HETATM 6 O O1B ATP . . . K 2 18.771 -34.878 35.599 1 18.07 ? O1B ATP 401 D 1 
HETATM 7 O O2B ATP . . . K 2 19.916 -35.202 33.709 1 15.94 ? O2B ATP 401 D 1 
HETATM 8 O O3B ATP . . . K 2 20.486 -36.803 35.631 1 16.29 ? O3B ATP 401 D 1 
HETATM 9 P PA ATP . . . K 2 21.954 -34.179 37.206 1 10.95 ? PA ATP 401 D 1 
HETATM 10 O O1A ATP . . . K 2 21.128 -34.898 38.161 1 11.14 ? O1A ATP 401 D 1 
HETATM 11 O O2A ATP . . . K 2 23.151 -34.995 37.251 1 10.22 ? O2A ATP 401 D 1 
HETATM 12 O O3A ATP . . . K 2 21.265 -34.176 35.69 1 15.36 ? O3A ATP 401 D 1 
HETATM 13 O O5' ATP . . . K 2 22.252 -32.641 37.73 1 11.01 ? O5' ATP 401 D 1 
HETATM 14 C C5' ATP . . . K 2 23.453 -31.999 37.335 1 10.12 ? C5' ATP 401 D 1 
HETATM 15 C C4' ATP . . . K 2 23.235 -30.586 36.931 1 11.21 ? C4' ATP 401 D 1 
HETATM 16 O O4' ATP . . . K 2 22.517 -30.531 35.602 1 9.94 ? O4' ATP 401 D 1 
HETATM 17 C C3' ATP . . . K 2 22.442 -29.837 37.941 1 11.44 ? C3' ATP 401 D 1 
HETATM 18 O O3' ATP . . . K 2 23.293 -28.799 38.508 1 9.87 ? O3' ATP 401 D 1 
HETATM 19 C C2' ATP . . . K 2 21.293 -29.241 37.277 1 15.15 ? C2' ATP 401 D 1 
HETATM 20 O O2' ATP . . . K 2 20.075 -29.827 37.828 1 17.77 ? O2' ATP 401 D 1 
HETATM 21 C C1' ATP . . . K 2 21.449 -29.475 35.812 1 9.02 ? C1' ATP 401 D 1 
HETATM 22 N N9 ATP . . . K 2 20.304 -29.888 35.071 1 12.17 ? N9 ATP 401 D 1 
HETATM 23 C C8 ATP . . . K 2 19.879 -31.092 35.054 1 12.29 ? C8 ATP 401 D 1 
HETATM 24 N N7 ATP . . . K 2 18.814 -31.122 34.22 1 9.37 ? N7 ATP 401 D 1 
HETATM 25 C C5 ATP . . . K 2 18.648 -29.813 33.72 1 11.01 ? C5 ATP 401 D 1 
HETATM 26 C C6 ATP . . . K 2 17.757 -29.177 32.838 1 11.65 ? C6 ATP 401 D 1 
HETATM 27 N N6 ATP . . . K 2 16.668 -29.937 32.195 1 8.86 ? N6 ATP 401 D 1 
HETATM 28 N N1 ATP . . . K 2 17.899 -27.889 32.584 1 11.77 ? N1 ATP 401 D 1 
HETATM 29 C C2 ATP . . . K 2 18.889 -27.18 33.165 1 11.07 ? C2 ATP 401 D 1 
HETATM 30 N N3 ATP . . . K 2 19.759 -27.76 34.013 1 9.39 ? N3 ATP 401 D 1 
HETATM 31 C C4 ATP . . . K 2 19.672 -29.059 34.314 1 10.5 ? C4 ATP 401 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#