data_7EFD # _model_server_result.job_id erp9CikIAvN_otcZuigvkA _model_server_result.datetime_utc '2025-08-31 15:13:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7efd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":5100}' # _entry.id 7EFD # _exptl.entry_id 7EFD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EFD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 (1-4) A,B,C 2 1 A,B,C 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0 -1 0 0 0 1 -1 0 0 55.5255 -55.5255 55.5255 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 111.051 111.051 3 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 111.051 0 111.051 4 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 111.051 111.051 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 7EFD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN A 1 5100 5100 BTN BTN . C 3 HOH A 1 5201 3 HOH HOH . C 3 HOH A 2 5202 37 HOH HOH . C 3 HOH A 3 5203 56 HOH HOH . C 3 HOH A 4 5204 10 HOH HOH . C 3 HOH A 5 5205 9 HOH HOH . C 3 HOH A 6 5206 16 HOH HOH . C 3 HOH A 7 5207 11 HOH HOH . C 3 HOH A 8 5208 36 HOH HOH . C 3 HOH A 9 5209 33 HOH HOH . C 3 HOH A 10 5210 5 HOH HOH . C 3 HOH A 11 5211 14 HOH HOH . C 3 HOH A 12 5212 4 HOH HOH . C 3 HOH A 13 5213 30 HOH HOH . C 3 HOH A 14 5214 22 HOH HOH . C 3 HOH A 15 5215 54 HOH HOH . C 3 HOH A 16 5216 53 HOH HOH . C 3 HOH A 17 5217 38 HOH HOH . C 3 HOH A 18 5218 25 HOH HOH . C 3 HOH A 19 5219 17 HOH HOH . C 3 HOH A 20 5220 13 HOH HOH . C 3 HOH A 21 5221 61 HOH HOH . C 3 HOH A 22 5222 24 HOH HOH . C 3 HOH A 23 5223 1 HOH HOH . C 3 HOH A 24 5224 28 HOH HOH . C 3 HOH A 25 5225 52 HOH HOH . C 3 HOH A 26 5226 51 HOH HOH . C 3 HOH A 27 5227 8 HOH HOH . C 3 HOH A 28 5228 43 HOH HOH . C 3 HOH A 29 5229 35 HOH HOH . C 3 HOH A 30 5230 57 HOH HOH . C 3 HOH A 31 5231 6 HOH HOH . C 3 HOH A 32 5232 42 HOH HOH . C 3 HOH A 33 5233 34 HOH HOH . C 3 HOH A 34 5234 50 HOH HOH . C 3 HOH A 35 5235 58 HOH HOH . C 3 HOH A 36 5236 27 HOH HOH . C 3 HOH A 37 5237 12 HOH HOH . C 3 HOH A 38 5238 31 HOH HOH . C 3 HOH A 39 5239 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . A . B 2 46.546 51.908 70.053 0.5 86.58 ? C11 BTN 5100 A 1 HETATM 2 O O11 BTN . A . B 2 46.8 53.13 69.959 0.5 80.28 ? O11 BTN 5100 A 1 HETATM 3 O O12 BTN . A . B 2 47.348 51.067 70.53 0.5 90.97 ? O12 BTN 5100 A 1 HETATM 4 C C10 BTN . A . B 2 45.189 51.422 69.561 0.5 77.34 ? C10 BTN 5100 A 1 HETATM 5 C C9 BTN . A . B 2 45.194 50.059 68.933 0.5 73.02 ? C9 BTN 5100 A 1 HETATM 6 C C8 BTN . A . B 2 45.975 50.018 67.637 0.5 64.1 ? C8 BTN 5100 A 1 HETATM 7 C C7 BTN . A . B 2 45.93 48.67 66.921 0.5 63.45 ? C7 BTN 5100 A 1 HETATM 8 C C2 BTN . A . B 2 47.041 48.532 65.866 0.5 68.68 ? C2 BTN 5100 A 1 HETATM 9 S S1 BTN . A . B 2 46.668 49.552 64.41 0.5 65.05 ? S1 BTN 5100 A 1 HETATM 10 C C6 BTN . A . B 2 47.795 48.68 63.323 0.5 59.81 ? C6 BTN 5100 A 1 HETATM 11 C C5 BTN . A . B 2 47.713 47.221 63.755 0.5 69.85 ? C5 BTN 5100 A 1 HETATM 12 N N1 BTN . A . B 2 46.643 46.493 63.131 0.5 68.47 ? N1 BTN 5100 A 1 HETATM 13 C C3 BTN . A . B 2 46.009 45.751 64.056 0.5 64.56 ? C3 BTN 5100 A 1 HETATM 14 O O3 BTN . A . B 2 45.482 44.667 63.881 0.5 64.18 ? O3 BTN 5100 A 1 HETATM 15 N N2 BTN . A . B 2 46.048 46.4 65.224 0.5 66.27 ? N2 BTN 5100 A 1 HETATM 16 C C4 BTN . A . B 2 47.278 47.133 65.283 0.5 69.7 ? C4 BTN 5100 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #