data_7EFX # _model_server_result.job_id pR3N3WlAZ0n5OK0JT6a3-w _model_server_result.datetime_utc '2024-11-13 06:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7efx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7EFX # _exptl.entry_id 7EFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.71 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-((5-bromofuran-2-yl)methyl)-8-(2-chloroacetyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EFX _cell.length_a 68.17 _cell.length_b 68.17 _cell.length_c 79.493 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 133 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 113 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id J3X _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id J3X _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.628 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H16 Br Cl N2 O3 S' _chem_comp.formula_weight 407.71 _chem_comp.id J3X _chem_comp.mon_nstd_flag . _chem_comp.name 4-((5-bromofuran-2-yl)methyl)-8-(2-chloroacetyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 J3X doub 173 n y C1 C4 J3X sing 174 n y C2 C5 J3X sing 175 n n C2 O1 J3X sing 176 n y C3 C4 J3X doub 177 n y C3 O1 J3X sing 178 n y C3 BR1 J3X sing 179 n n C5 N1 J3X sing 180 n n C6 N1 J3X sing 181 n n C6 C7 J3X sing 182 n n C6 O2 J3X doub 183 n n N1 C8 J3X sing 184 n n S1 C7 J3X sing 185 n n S1 C8 J3X sing 186 n n C8 C9 J3X sing 187 n n C8 C12 J3X sing 188 n n C9 C10 J3X sing 189 n n C10 N2 J3X sing 190 n n C11 C12 J3X sing 191 n n C11 N2 J3X sing 192 n n C13 C14 J3X sing 193 n n C13 O3 J3X doub 194 n n C13 N2 J3X sing 195 n n C1 H1 J3X sing 196 n n C4 H2 J3X sing 197 n n C5 H3 J3X sing 198 n n C5 H4 J3X sing 199 n n C7 H5 J3X sing 200 n n C7 H6 J3X sing 201 n n C9 H7 J3X sing 202 n n C10 H8 J3X sing 203 n n C10 H9 J3X sing 204 n n C11 H10 J3X sing 205 n n C11 H11 J3X sing 206 n n C12 H12 J3X sing 207 n n C12 H13 J3X sing 208 n n C14 H14 J3X sing 209 n n C14 H15 J3X sing 210 n n C14 CL1 J3X sing 211 n n C9 H17 J3X sing 212 n n # _atom_sites.entry_id 7EFX _atom_sites.fract_transf_matrix[1][1] 0.014669 _atom_sites.fract_transf_matrix[1][2] 0.008469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J3X A 1 201 1 J3X 57A . C 3 HOH A 1 301 71 HOH HOH . C 3 HOH A 2 302 12 HOH HOH . C 3 HOH A 3 303 67 HOH HOH . C 3 HOH A 4 304 1 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 11 HOH HOH . C 3 HOH A 8 308 10 HOH HOH . C 3 HOH A 9 309 7 HOH HOH . C 3 HOH A 10 310 29 HOH HOH . C 3 HOH A 11 311 1 HOH HOH . C 3 HOH A 12 312 16 HOH HOH . C 3 HOH A 13 313 24 HOH HOH . C 3 HOH A 14 314 58 HOH HOH . C 3 HOH A 15 315 3 HOH HOH . C 3 HOH A 16 316 4 HOH HOH . C 3 HOH A 17 317 52 HOH HOH . C 3 HOH A 18 318 5 HOH HOH . C 3 HOH A 19 319 6 HOH HOH . C 3 HOH A 20 320 17 HOH HOH . C 3 HOH A 21 321 56 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 15 HOH HOH . C 3 HOH A 24 324 14 HOH HOH . C 3 HOH A 25 325 26 HOH HOH . C 3 HOH A 26 326 11 HOH HOH . C 3 HOH A 27 327 9 HOH HOH . C 3 HOH A 28 328 57 HOH HOH . C 3 HOH A 29 329 19 HOH HOH . C 3 HOH A 30 330 6 HOH HOH . C 3 HOH A 31 331 2 HOH HOH . C 3 HOH A 32 332 31 HOH HOH . C 3 HOH A 33 333 24 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 6 HOH HOH . C 3 HOH A 36 336 13 HOH HOH . C 3 HOH A 37 337 51 HOH HOH . C 3 HOH A 38 338 40 HOH HOH . C 3 HOH A 39 339 35 HOH HOH . C 3 HOH A 40 340 21 HOH HOH . C 3 HOH A 41 341 48 HOH HOH . C 3 HOH A 42 342 7 HOH HOH . C 3 HOH A 43 343 23 HOH HOH . C 3 HOH A 44 344 15 HOH HOH . C 3 HOH A 45 345 22 HOH HOH . C 3 HOH A 46 346 4 HOH HOH . C 3 HOH A 47 347 7 HOH HOH . C 3 HOH A 48 348 41 HOH HOH . C 3 HOH A 49 349 2 HOH HOH . C 3 HOH A 50 350 18 HOH HOH . C 3 HOH A 51 351 3 HOH HOH . C 3 HOH A 52 352 44 HOH HOH . C 3 HOH A 53 353 60 HOH HOH . C 3 HOH A 54 354 27 HOH HOH . C 3 HOH A 55 355 28 HOH HOH . C 3 HOH A 56 356 27 HOH HOH . C 3 HOH A 57 357 32 HOH HOH . C 3 HOH A 58 358 68 HOH HOH . C 3 HOH A 59 359 38 HOH HOH . C 3 HOH A 60 360 16 HOH HOH . C 3 HOH A 61 361 11 HOH HOH . C 3 HOH A 62 362 76 HOH HOH . C 3 HOH A 63 363 42 HOH HOH . C 3 HOH A 64 364 9 HOH HOH . C 3 HOH A 65 365 40 HOH HOH . C 3 HOH A 66 366 36 HOH HOH . C 3 HOH A 67 367 10 HOH HOH . C 3 HOH A 68 368 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J3X . . . B 2 -10.735 41.046 80.71 1 113.84 ? C1 J3X 201 A 1 HETATM 2 C C2 J3X . . . B 2 -9.409 41.192 81.08 1 100.93 ? C2 J3X 201 A 1 HETATM 3 C C3 J3X . . . B 2 -10.456 40.368 82.816 1 131.94 ? C3 J3X 201 A 1 HETATM 4 C C4 J3X . . . B 2 -11.385 40.532 81.797 1 131.39 ? C4 J3X 201 A 1 HETATM 5 C C5 J3X . . . B 2 -8.258 41.709 80.244 1 79.58 ? C5 J3X 201 A 1 HETATM 6 C C6 J3X . . . B 2 -6.749 39.59 80.043 1 45.41 ? C6 J3X 201 A 1 HETATM 7 N N1 J3X . . . B 2 -7.023 40.948 80.503 1 53.02 ? N1 J3X 201 A 1 HETATM 8 S S1 J3X . . . B 2 -4.481 40.396 81.23 1 46.97 ? S1 J3X 201 A 1 HETATM 9 C C7 J3X . . . B 2 -5.365 39.08 80.39 1 47.67 ? C7 J3X 201 A 1 HETATM 10 C C8 J3X . . . B 2 -5.885 41.558 81.194 1 49.48 ? C8 J3X 201 A 1 HETATM 11 C C9 J3X . . . B 2 -5.06 42.519 80.328 1 42.1 ? C9 J3X 201 A 1 HETATM 12 O O1 J3X . . . B 2 -9.245 40.781 82.361 1 112.42 ? O1 J3X 201 A 1 HETATM 13 C C10 J3X . . . B 2 -4.703 43.862 80.932 1 43.09 ? C10 J3X 201 A 1 HETATM 14 O O2 J3X . . . B 2 -7.512 38.926 79.46 1 45.1 ? O2 J3X 201 A 1 HETATM 15 C C11 J3X . . . B 2 -4.828 42.657 83.237 1 42.43 ? C11 J3X 201 A 1 HETATM 16 C C12 J3X . . . B 2 -6.072 42.02 82.645 1 45.55 ? C12 J3X 201 A 1 HETATM 17 C C13 J3X . . . B 2 -3.971 45.049 82.962 1 39.41 ? C13 J3X 201 A 1 HETATM 18 C C14 J3X . . . B 2 -3.673 45.192 84.462 1 40.31 ? C14 J3X 201 A 1 HETATM 19 O O3 J3X . . . B 2 -3.752 45.932 82.208 1 39.46 ? O3 J3X 201 A 1 HETATM 20 N N2 J3X . . . B 2 -4.503 43.825 82.39 1 43.67 ? N2 J3X 201 A 1 HETATM 21 BR BR1 J3X . . . B 2 -10.714 39.682 84.616 1 158.91 ? BR1 J3X 201 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #