data_7EG4 # _model_server_result.job_id wjD7BnYFj-rJUyfOhpieEw _model_server_result.datetime_utc '2024-12-21 13:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 7EG4 # _exptl.entry_id 7EG4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 287.315 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Parvine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EG4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 380 D CYS 381 1_555 B SG CYS 410 D CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 380 B CYS 381 1_555 D SG CYS 410 B CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD2 ASP 169 C ASP 837 1_555 F MG MG . C MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc2 A OD1 ASP 282 C ASP 950 1_555 F MG MG . C MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 B ND1 HIS 274 D HIS 275 1_555 H ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 B SG CYS 276 D CYS 277 1_555 H ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 B SG CYS 310 D CYS 311 1_555 H ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 B SG CYS 311 D CYS 312 1_555 H ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 C OD2 ASP 169 A ASP 837 1_555 J MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc8 C OD1 ASP 282 A ASP 950 1_555 J MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc9 D ND1 HIS 274 B HIS 275 1_555 L ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc10 D SG CYS 276 B CYS 277 1_555 L ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 D SG CYS 310 B CYS 311 1_555 L ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 D SG CYS 311 B CYS 312 1_555 L ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C18 H13 N3 O' _chem_comp.formula_weight 287.315 _chem_comp.id J36 _chem_comp.mon_nstd_flag . _chem_comp.name Parvine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 J36 doub 171 n y C15 C13 J36 sing 172 n y C14 C12 J36 sing 173 n y C13 C7 J36 doub 174 n y C12 C6 J36 doub 175 n y C7 C6 J36 sing 176 n y C7 N2 J36 sing 177 n y C6 C1 J36 sing 178 n y N2 C3 J36 sing 179 n y C1 C3 J36 doub 180 n y C1 C2 J36 sing 181 n n C3 C5 J36 sing 182 n n C8 C5 J36 doub 183 n n C8 C10 J36 sing 184 n n C16 C10 J36 doub 185 n y C16 C18 J36 sing 186 n y C2 C4 J36 sing 187 n n C5 N1 J36 sing 188 n n C10 C11 J36 sing 189 n y C18 N3 J36 doub 190 n y N1 C9 J36 sing 191 n n N1 C4 J36 sing 192 n n C11 C17 J36 doub 193 n y C11 C9 J36 sing 194 n n N3 C17 J36 sing 195 n y C9 O1 J36 doub 196 n n C2 H2 J36 sing 197 n n C2 H1 J36 sing 198 n n C4 H4 J36 sing 199 n n C4 H3 J36 sing 200 n n N2 H5 J36 sing 201 n n C8 H6 J36 sing 202 n n C12 H7 J36 sing 203 n n C13 H8 J36 sing 204 n n C14 H9 J36 sing 205 n n C15 H10 J36 sing 206 n n C16 H11 J36 sing 207 n n C17 H12 J36 sing 208 n n C18 H13 J36 sing 209 n n # _atom_sites.entry_id 7EG4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 J36 C 1 1201 1201 J36 NAU . F 4 MG C 1 1202 1 MG MG . G 4 MG C 1 1203 2 MG MG . H 5 ZN D 1 601 3 ZN ZN . I 3 J36 A 1 1201 1201 J36 NAU . J 4 MG A 1 1202 1 MG MG . K 4 MG A 1 1203 2 MG MG . L 5 ZN B 1 601 3 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J36 . . . I 3 95.451 90.452 81.256 1 0 ? C1 J36 1201 A 1 HETATM 2 C C2 J36 . . . I 3 95.384 88.993 81.516 1 0 ? C2 J36 1201 A 1 HETATM 3 C C3 J36 . . . I 3 94.298 91.203 81.286 1 0 ? C3 J36 1201 A 1 HETATM 4 C C4 J36 . . . I 3 94.176 88.691 82.425 1 0 ? C4 J36 1201 A 1 HETATM 5 C C5 J36 . . . I 3 92.993 90.721 81.566 1 0 ? C5 J36 1201 A 1 HETATM 6 N N2 J36 . . . I 3 94.628 92.502 81.01 1 0 ? N2 J36 1201 A 1 HETATM 7 C C10 J36 . . . I 3 90.574 90.875 81.582 1 0 ? C10 J36 1201 A 1 HETATM 8 C C11 J36 . . . I 3 90.472 89.58 82.09 1 0 ? C11 J36 1201 A 1 HETATM 9 C C6 J36 . . . I 3 96.532 91.317 80.942 1 0 ? C6 J36 1201 A 1 HETATM 10 C C7 J36 . . . I 3 95.989 92.598 80.795 1 0 ? C7 J36 1201 A 1 HETATM 11 C C8 J36 . . . I 3 91.892 91.447 81.318 1 0 ? C8 J36 1201 A 1 HETATM 12 C C9 J36 . . . I 3 91.695 88.792 82.372 1 0 ? C9 J36 1201 A 1 HETATM 13 O O1 J36 . . . I 3 91.576 87.667 82.854 1 0 ? O1 J36 1201 A 1 HETATM 14 N N1 J36 . . . I 3 92.922 89.409 82.07 1 0 ? N1 J36 1201 A 1 HETATM 15 N N3 J36 . . . I 3 88.062 89.741 82.096 1 0 ? N3 J36 1201 A 1 HETATM 16 C C12 J36 . . . I 3 97.919 91.144 80.767 1 0 ? C12 J36 1201 A 1 HETATM 17 C C13 J36 . . . I 3 96.772 93.715 80.481 1 0 ? C13 J36 1201 A 1 HETATM 18 C C14 J36 . . . I 3 98.713 92.253 80.454 1 0 ? C14 J36 1201 A 1 HETATM 19 C C15 J36 . . . I 3 98.145 93.518 80.314 1 0 ? C15 J36 1201 A 1 HETATM 20 C C16 J36 . . . I 3 89.411 91.599 81.331 1 0 ? C16 J36 1201 A 1 HETATM 21 C C17 J36 . . . I 3 89.206 89.061 82.329 1 0 ? C17 J36 1201 A 1 HETATM 22 C C18 J36 . . . I 3 88.193 90.992 81.604 1 0 ? C18 J36 1201 A 1 HETATM 23 H H2 J36 . . . I 3 96.304 88.628 81.987 1 0 ? H2 J36 1201 A 1 HETATM 24 H H1 J36 . . . I 3 95.262 88.469 80.561 1 0 ? H1 J36 1201 A 1 HETATM 25 H H4 J36 . . . I 3 94.405 88.985 83.459 1 0 ? H4 J36 1201 A 1 HETATM 26 H H3 J36 . . . I 3 93.992 87.611 82.439 1 0 ? H3 J36 1201 A 1 HETATM 27 H H5 J36 . . . I 3 93.989 93.284 80.972 1 0 ? H5 J36 1201 A 1 HETATM 28 H H6 J36 . . . I 3 91.926 92.451 80.907 1 0 ? H6 J36 1201 A 1 HETATM 29 H H7 J36 . . . I 3 98.376 90.164 80.875 1 0 ? H7 J36 1201 A 1 HETATM 30 H H8 J36 . . . I 3 96.332 94.701 80.371 1 0 ? H8 J36 1201 A 1 HETATM 31 H H9 J36 . . . I 3 99.783 92.125 80.319 1 0 ? H9 J36 1201 A 1 HETATM 32 H H10 J36 . . . I 3 98.78 94.367 80.069 1 0 ? H10 J36 1201 A 1 HETATM 33 H H11 J36 . . . I 3 89.439 92.608 80.936 1 0 ? H11 J36 1201 A 1 HETATM 34 H H12 J36 . . . I 3 89.059 88.061 82.724 1 0 ? H12 J36 1201 A 1 HETATM 35 H H13 J36 . . . I 3 87.261 91.517 81.424 1 0 ? H13 J36 1201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 853 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #