data_7EG5 # _model_server_result.job_id dxBfhW0VmA4yv-UiDF3sKw _model_server_result.datetime_utc '2024-10-20 19:46:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7eg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7EG5 # _exptl.entry_id 7EG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EG5 _cell.length_a 41.509 _cell.length_b 94.801 _cell.length_c 142.075 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 7EG5 _atom_sites.fract_transf_matrix[1][1] 0.024091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 126 FMN FMN . D 2 FMN B 1 201 126 FMN FMN . E 3 HOH A 1 301 16 HOH HOH . E 3 HOH A 2 302 4 HOH HOH . E 3 HOH A 3 303 12 HOH HOH . E 3 HOH A 4 304 2 HOH HOH . E 3 HOH A 5 305 15 HOH HOH . E 3 HOH A 6 306 14 HOH HOH . E 3 HOH A 7 307 1 HOH HOH . E 3 HOH A 8 308 8 HOH HOH . F 3 HOH B 1 301 3 HOH HOH . F 3 HOH B 2 302 10 HOH HOH . F 3 HOH B 3 303 5 HOH HOH . F 3 HOH B 4 304 6 HOH HOH . F 3 HOH B 5 305 9 HOH HOH . F 3 HOH B 6 306 7 HOH HOH . F 3 HOH B 7 307 11 HOH HOH . F 3 HOH B 8 308 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 -19.764 -3.138 6.21 1 65.13 ? N1 FMN 201 B 1 HETATM 2 C C2 FMN . . . D 2 -20.321 -1.893 6.074 1 65.44 ? C2 FMN 201 B 1 HETATM 3 O O2 FMN . . . D 2 -21.383 -1.725 5.43 1 60.2 ? O2 FMN 201 B 1 HETATM 4 N N3 FMN . . . D 2 -19.735 -0.788 6.639 1 57.94 ? N3 FMN 201 B 1 HETATM 5 C C4 FMN . . . D 2 -18.529 -0.86 7.309 1 57.4 ? C4 FMN 201 B 1 HETATM 6 O O4 FMN . . . D 2 -18.089 0.154 7.859 1 53.31 ? O4 FMN 201 B 1 HETATM 7 C C4A FMN . . . D 2 -17.977 -2.156 7.534 1 50.9 ? C4A FMN 201 B 1 HETATM 8 N N5 FMN . . . D 2 -16.851 -2.266 8.207 1 56.48 ? N5 FMN 201 B 1 HETATM 9 C C5A FMN . . . D 2 -16.406 -3.523 8.531 1 47.62 ? C5A FMN 201 B 1 HETATM 10 C C6 FMN . . . D 2 -15.3 -3.628 9.401 1 40.89 ? C6 FMN 201 B 1 HETATM 11 C C7 FMN . . . D 2 -14.868 -4.836 9.872 1 36.98 ? C7 FMN 201 B 1 HETATM 12 C C7M FMN . . . D 2 -13.727 -4.891 10.858 1 40.49 ? C7M FMN 201 B 1 HETATM 13 C C8 FMN . . . D 2 -15.532 -6.006 9.446 1 37.25 ? C8 FMN 201 B 1 HETATM 14 C C8M FMN . . . D 2 -15.066 -7.348 9.941 1 51.07 ? C8M FMN 201 B 1 HETATM 15 C C9 FMN . . . D 2 -16.515 -5.927 8.47 1 43.45 ? C9 FMN 201 B 1 HETATM 16 C C9A FMN . . . D 2 -17.035 -4.69 8.051 1 48.2 ? C9A FMN 201 B 1 HETATM 17 N N10 FMN . . . D 2 -18.118 -4.537 7.164 1 50.4 ? N10 FMN 201 B 1 HETATM 18 C C10 FMN . . . D 2 -18.667 -3.269 6.936 1 57.49 ? C10 FMN 201 B 1 HETATM 19 C C1' FMN . . . D 2 -18.834 -5.72 6.632 1 55.27 ? C1' FMN 201 B 1 HETATM 20 C C2' FMN . . . D 2 -20.112 -6.08 7.408 1 58.07 ? C2' FMN 201 B 1 HETATM 21 O O2' FMN . . . D 2 -19.803 -7.04 8.391 1 37.34 ? O2' FMN 201 B 1 HETATM 22 C C3' FMN . . . D 2 -21.227 -6.727 6.567 1 59.89 ? C3' FMN 201 B 1 HETATM 23 O O3' FMN . . . D 2 -20.82 -8.077 6.302 1 65.45 ? O3' FMN 201 B 1 HETATM 24 C C4' FMN . . . D 2 -21.632 -6.046 5.245 1 62.05 ? C4' FMN 201 B 1 HETATM 25 O O4' FMN . . . D 2 -22.144 -4.735 5.515 1 50.21 ? O4' FMN 201 B 1 HETATM 26 C C5' FMN . . . D 2 -22.685 -6.859 4.515 1 58.26 ? C5' FMN 201 B 1 HETATM 27 O O5' FMN . . . D 2 -23.555 -7.399 5.565 1 55.44 ? O5' FMN 201 B 1 HETATM 28 P P FMN . . . D 2 -24.84 -8.216 5.186 1 55.15 ? P FMN 201 B 1 HETATM 29 O O1P FMN . . . D 2 -24.352 -9.608 4.797 1 53.42 ? O1P FMN 201 B 1 HETATM 30 O O2P FMN . . . D 2 -25.44 -7.403 4.027 1 58.84 ? O2P FMN 201 B 1 HETATM 31 O O3P FMN . . . D 2 -25.761 -8.273 6.376 1 51.79 ? O3P FMN 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #