data_7EGN # _model_server_result.job_id c_1LSgwtYqWcU0ZzM7w_Pg _model_server_result.datetime_utc '2024-11-06 21:42:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7egn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":504}' # _entry.id 7EGN # _exptl.entry_id 7EGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.98 _cell.angle_gamma 90 _cell.entry_id 7EGN _cell.length_a 58.67 _cell.length_b 147.557 _cell.length_c 64.324 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 400 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 E N HOA . A HOA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc3 F FE HEM . B HEM 501 1_555 H N HOA . B HOA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 F FE HEM . B HEM 501 1_555 H O HOA . B HOA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7EGN _atom_sites.fract_transf_matrix[1][1] 0.017044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002999 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 IC6 A 1 502 601 IC6 IC6 . E 4 HOA A 1 503 701 HOA HOA . F 2 HEM B 1 501 501 HEM HEM . G 3 IC6 B 1 502 601 IC6 IC6 . H 4 HOA B 1 503 701 HOA HOA . I 5 GOL B 1 504 801 GOL GOL . J 6 HOH A 1 601 48 HOH HOH . J 6 HOH A 2 602 96 HOH HOH . J 6 HOH A 3 603 128 HOH HOH . J 6 HOH A 4 604 57 HOH HOH . J 6 HOH A 5 605 2 HOH HOH . J 6 HOH A 6 606 10 HOH HOH . J 6 HOH A 7 607 61 HOH HOH . J 6 HOH A 8 608 12 HOH HOH . J 6 HOH A 9 609 108 HOH HOH . J 6 HOH A 10 610 68 HOH HOH . J 6 HOH A 11 611 67 HOH HOH . J 6 HOH A 12 612 76 HOH HOH . J 6 HOH A 13 613 47 HOH HOH . J 6 HOH A 14 614 62 HOH HOH . J 6 HOH A 15 615 3 HOH HOH . J 6 HOH A 16 616 55 HOH HOH . J 6 HOH A 17 617 7 HOH HOH . J 6 HOH A 18 618 75 HOH HOH . J 6 HOH A 19 619 28 HOH HOH . J 6 HOH A 20 620 9 HOH HOH . J 6 HOH A 21 621 59 HOH HOH . J 6 HOH A 22 622 131 HOH HOH . J 6 HOH A 23 623 20 HOH HOH . J 6 HOH A 24 624 156 HOH HOH . J 6 HOH A 25 625 42 HOH HOH . J 6 HOH A 26 626 146 HOH HOH . J 6 HOH A 27 627 100 HOH HOH . J 6 HOH A 28 628 99 HOH HOH . J 6 HOH A 29 629 136 HOH HOH . J 6 HOH A 30 630 26 HOH HOH . J 6 HOH A 31 631 37 HOH HOH . J 6 HOH A 32 632 36 HOH HOH . J 6 HOH A 33 633 80 HOH HOH . J 6 HOH A 34 634 1 HOH HOH . J 6 HOH A 35 635 63 HOH HOH . J 6 HOH A 36 636 66 HOH HOH . J 6 HOH A 37 637 46 HOH HOH . J 6 HOH A 38 638 114 HOH HOH . J 6 HOH A 39 639 138 HOH HOH . J 6 HOH A 40 640 31 HOH HOH . J 6 HOH A 41 641 124 HOH HOH . J 6 HOH A 42 642 132 HOH HOH . J 6 HOH A 43 643 70 HOH HOH . J 6 HOH A 44 644 27 HOH HOH . J 6 HOH A 45 645 14 HOH HOH . J 6 HOH A 46 646 107 HOH HOH . J 6 HOH A 47 647 21 HOH HOH . J 6 HOH A 48 648 23 HOH HOH . J 6 HOH A 49 649 90 HOH HOH . J 6 HOH A 50 650 18 HOH HOH . J 6 HOH A 51 651 120 HOH HOH . J 6 HOH A 52 652 60 HOH HOH . J 6 HOH A 53 653 106 HOH HOH . J 6 HOH A 54 654 34 HOH HOH . J 6 HOH A 55 655 83 HOH HOH . J 6 HOH A 56 656 81 HOH HOH . J 6 HOH A 57 657 148 HOH HOH . J 6 HOH A 58 658 53 HOH HOH . J 6 HOH A 59 659 142 HOH HOH . J 6 HOH A 60 660 125 HOH HOH . J 6 HOH A 61 661 112 HOH HOH . J 6 HOH A 62 662 133 HOH HOH . J 6 HOH A 63 663 43 HOH HOH . J 6 HOH A 64 664 129 HOH HOH . J 6 HOH A 65 665 153 HOH HOH . J 6 HOH A 66 666 109 HOH HOH . J 6 HOH A 67 667 16 HOH HOH . J 6 HOH A 68 668 38 HOH HOH . J 6 HOH A 69 669 17 HOH HOH . J 6 HOH A 70 670 82 HOH HOH . J 6 HOH A 71 671 33 HOH HOH . J 6 HOH A 72 672 105 HOH HOH . J 6 HOH A 73 673 40 HOH HOH . J 6 HOH A 74 674 25 HOH HOH . J 6 HOH A 75 675 144 HOH HOH . J 6 HOH A 76 676 87 HOH HOH . J 6 HOH A 77 677 103 HOH HOH . J 6 HOH A 78 678 72 HOH HOH . J 6 HOH A 79 679 116 HOH HOH . J 6 HOH A 80 680 85 HOH HOH . J 6 HOH A 81 681 95 HOH HOH . J 6 HOH A 82 682 110 HOH HOH . J 6 HOH A 83 683 86 HOH HOH . J 6 HOH A 84 684 149 HOH HOH . J 6 HOH A 85 685 98 HOH HOH . J 6 HOH A 86 686 150 HOH HOH . K 6 HOH B 1 601 35 HOH HOH . K 6 HOH B 2 602 30 HOH HOH . K 6 HOH B 3 603 157 HOH HOH . K 6 HOH B 4 604 52 HOH HOH . K 6 HOH B 5 605 84 HOH HOH . K 6 HOH B 6 606 56 HOH HOH . K 6 HOH B 7 607 49 HOH HOH . K 6 HOH B 8 608 32 HOH HOH . K 6 HOH B 9 609 137 HOH HOH . K 6 HOH B 10 610 65 HOH HOH . K 6 HOH B 11 611 5 HOH HOH . K 6 HOH B 12 612 51 HOH HOH . K 6 HOH B 13 613 89 HOH HOH . K 6 HOH B 14 614 104 HOH HOH . K 6 HOH B 15 615 4 HOH HOH . K 6 HOH B 16 616 111 HOH HOH . K 6 HOH B 17 617 29 HOH HOH . K 6 HOH B 18 618 22 HOH HOH . K 6 HOH B 19 619 6 HOH HOH . K 6 HOH B 20 620 158 HOH HOH . K 6 HOH B 21 621 101 HOH HOH . K 6 HOH B 22 622 145 HOH HOH . K 6 HOH B 23 623 54 HOH HOH . K 6 HOH B 24 624 121 HOH HOH . K 6 HOH B 25 625 15 HOH HOH . K 6 HOH B 26 626 151 HOH HOH . K 6 HOH B 27 627 44 HOH HOH . K 6 HOH B 28 628 126 HOH HOH . K 6 HOH B 29 629 58 HOH HOH . K 6 HOH B 30 630 45 HOH HOH . K 6 HOH B 31 631 13 HOH HOH . K 6 HOH B 32 632 8 HOH HOH . K 6 HOH B 33 633 91 HOH HOH . K 6 HOH B 34 634 50 HOH HOH . K 6 HOH B 35 635 154 HOH HOH . K 6 HOH B 36 636 77 HOH HOH . K 6 HOH B 37 637 78 HOH HOH . K 6 HOH B 38 638 24 HOH HOH . K 6 HOH B 39 639 141 HOH HOH . K 6 HOH B 40 640 155 HOH HOH . K 6 HOH B 41 641 130 HOH HOH . K 6 HOH B 42 642 74 HOH HOH . K 6 HOH B 43 643 79 HOH HOH . K 6 HOH B 44 644 69 HOH HOH . K 6 HOH B 45 645 19 HOH HOH . K 6 HOH B 46 646 39 HOH HOH . K 6 HOH B 47 647 122 HOH HOH . K 6 HOH B 48 648 93 HOH HOH . K 6 HOH B 49 649 97 HOH HOH . K 6 HOH B 50 650 64 HOH HOH . K 6 HOH B 51 651 71 HOH HOH . K 6 HOH B 52 652 140 HOH HOH . K 6 HOH B 53 653 11 HOH HOH . K 6 HOH B 54 654 134 HOH HOH . K 6 HOH B 55 655 88 HOH HOH . K 6 HOH B 56 656 41 HOH HOH . K 6 HOH B 57 657 113 HOH HOH . K 6 HOH B 58 658 73 HOH HOH . K 6 HOH B 59 659 135 HOH HOH . K 6 HOH B 60 660 92 HOH HOH . K 6 HOH B 61 661 94 HOH HOH . K 6 HOH B 62 662 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -20.227 -22.131 -43.847 1 77.12 ? C1 GOL 504 B 1 HETATM 2 O O1 GOL . . . I 5 -20.6 -23.126 -42.943 1 74.08 ? O1 GOL 504 B 1 HETATM 3 C C2 GOL . . . I 5 -20.591 -20.763 -43.23 1 77.23 ? C2 GOL 504 B 1 HETATM 4 O O2 GOL . . . I 5 -20.031 -20.582 -41.99 1 64.48 ? O2 GOL 504 B 1 HETATM 5 C C3 GOL . . . I 5 -22.129 -20.73 -43.178 1 73.64 ? C3 GOL 504 B 1 HETATM 6 O O3 GOL . . . I 5 -22.468 -19.518 -42.587 1 64.23 ? O3 GOL 504 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #