data_7EHJ # _model_server_result.job_id 7Bwr1J79_v4e16F993rk-Q _model_server_result.datetime_utc '2024-11-06 22:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7EHJ # _exptl.entry_id 7EHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EHJ _cell.length_a 115.056 _cell.length_b 115.056 _cell.length_c 113.559 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H18 N6 O7' _chem_comp.formula_weight 418.361 _chem_comp.id J49 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 J49 doub 173 n n C23 C19 J49 sing 174 n n C23 O24 J49 sing 175 n n O18 C16 J49 doub 176 n n C19 C26 J49 sing 177 n n C19 N17 J49 sing 178 n n C26 C27 J49 sing 179 n n C16 N17 J49 sing 180 n n C16 C13 J49 sing 181 n n C27 C28 J49 sing 182 n n C12 C13 J49 doub 183 n y C12 C11 J49 sing 184 n y C13 C14 J49 sing 185 n y C28 O30 J49 doub 186 n n C28 O29 J49 sing 187 n n C11 C10 J49 doub 188 n y C14 C15 J49 doub 189 n y C10 C15 J49 sing 190 n y C10 N9 J49 sing 191 n n O7 C8 J49 doub 192 n n O20 C3 J49 sing 193 n n N9 C8 J49 sing 194 n n C8 N21 J49 sing 195 n n C3 N2 J49 sing 196 n y C3 C4 J49 doub 197 n y N2 C1 J49 doub 198 n y N21 C4 J49 sing 199 n n C4 C5 J49 sing 200 n y C1 N6 J49 sing 201 n y C5 N6 J49 doub 202 n y C5 N22 J49 sing 203 n n C1 H1 J49 sing 204 n n C11 H2 J49 sing 205 n n C12 H3 J49 sing 206 n n C14 H4 J49 sing 207 n n C15 H5 J49 sing 208 n n C19 H6 J49 sing 209 n n C26 H7 J49 sing 210 n n C26 H8 J49 sing 211 n n C27 H9 J49 sing 212 n n C27 H10 J49 sing 213 n n N9 H12 J49 sing 214 n n N17 H13 J49 sing 215 n n N21 H14 J49 sing 216 n n N22 H15 J49 sing 217 n n N22 H16 J49 sing 218 n n O24 H17 J49 sing 219 n n O29 H18 J49 sing 220 n n O20 H11 J49 sing 221 n n # _atom_sites.entry_id 7EHJ _atom_sites.fract_transf_matrix[1][1] 0.008691 _atom_sites.fract_transf_matrix[1][2] 0.005018 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J49 A 1 501 501 J49 037 . D 3 NAD A 1 502 601 NAD NAD . E 4 PO4 A 1 503 602 PO4 PO4 . F 4 PO4 A 1 504 602 PO4 PO4 . G 2 J49 B 1 501 501 J49 037 . H 3 NAD B 1 502 601 NAD NAD . I 5 HOH A 1 601 33 HOH HOH . I 5 HOH A 2 602 78 HOH HOH . I 5 HOH A 3 603 36 HOH HOH . I 5 HOH A 4 604 131 HOH HOH . I 5 HOH A 5 605 6 HOH HOH . I 5 HOH A 6 606 15 HOH HOH . I 5 HOH A 7 607 59 HOH HOH . I 5 HOH A 8 608 119 HOH HOH . I 5 HOH A 9 609 85 HOH HOH . I 5 HOH A 10 610 139 HOH HOH . I 5 HOH A 11 611 63 HOH HOH . I 5 HOH A 12 612 26 HOH HOH . I 5 HOH A 13 613 46 HOH HOH . I 5 HOH A 14 614 61 HOH HOH . I 5 HOH A 15 615 58 HOH HOH . I 5 HOH A 16 616 231 HOH HOH . I 5 HOH A 17 617 209 HOH HOH . I 5 HOH A 18 618 89 HOH HOH . I 5 HOH A 19 619 213 HOH HOH . I 5 HOH A 20 620 41 HOH HOH . I 5 HOH A 21 621 158 HOH HOH . I 5 HOH A 22 622 20 HOH HOH . I 5 HOH A 23 623 81 HOH HOH . I 5 HOH A 24 624 7 HOH HOH . I 5 HOH A 25 625 168 HOH HOH . I 5 HOH A 26 626 28 HOH HOH . I 5 HOH A 27 627 30 HOH HOH . I 5 HOH A 28 628 221 HOH HOH . I 5 HOH A 29 629 50 HOH HOH . I 5 HOH A 30 630 181 HOH HOH . I 5 HOH A 31 631 145 HOH HOH . I 5 HOH A 32 632 71 HOH HOH . I 5 HOH A 33 633 25 HOH HOH . I 5 HOH A 34 634 202 HOH HOH . I 5 HOH A 35 635 24 HOH HOH . I 5 HOH A 36 636 52 HOH HOH . I 5 HOH A 37 637 45 HOH HOH . I 5 HOH A 38 638 21 HOH HOH . I 5 HOH A 39 639 188 HOH HOH . I 5 HOH A 40 640 1 HOH HOH . I 5 HOH A 41 641 176 HOH HOH . I 5 HOH A 42 642 114 HOH HOH . I 5 HOH A 43 643 43 HOH HOH . I 5 HOH A 44 644 185 HOH HOH . I 5 HOH A 45 645 92 HOH HOH . I 5 HOH A 46 646 116 HOH HOH . I 5 HOH A 47 647 102 HOH HOH . I 5 HOH A 48 648 2 HOH HOH . I 5 HOH A 49 649 218 HOH HOH . I 5 HOH A 50 650 155 HOH HOH . I 5 HOH A 51 651 86 HOH HOH . I 5 HOH A 52 652 39 HOH HOH . I 5 HOH A 53 653 9 HOH HOH . I 5 HOH A 54 654 49 HOH HOH . I 5 HOH A 55 655 80 HOH HOH . I 5 HOH A 56 656 171 HOH HOH . I 5 HOH A 57 657 219 HOH HOH . I 5 HOH A 58 658 138 HOH HOH . I 5 HOH A 59 659 34 HOH HOH . I 5 HOH A 60 660 128 HOH HOH . I 5 HOH A 61 661 96 HOH HOH . I 5 HOH A 62 662 3 HOH HOH . I 5 HOH A 63 663 31 HOH HOH . I 5 HOH A 64 664 120 HOH HOH . I 5 HOH A 65 665 64 HOH HOH . I 5 HOH A 66 666 125 HOH HOH . I 5 HOH A 67 667 23 HOH HOH . I 5 HOH A 68 668 38 HOH HOH . I 5 HOH A 69 669 82 HOH HOH . I 5 HOH A 70 670 226 HOH HOH . I 5 HOH A 71 671 193 HOH HOH . I 5 HOH A 72 672 122 HOH HOH . I 5 HOH A 73 673 191 HOH HOH . I 5 HOH A 74 674 162 HOH HOH . I 5 HOH A 75 675 12 HOH HOH . I 5 HOH A 76 676 133 HOH HOH . I 5 HOH A 77 677 60 HOH HOH . I 5 HOH A 78 678 101 HOH HOH . I 5 HOH A 79 679 44 HOH HOH . I 5 HOH A 80 680 147 HOH HOH . I 5 HOH A 81 681 136 HOH HOH . I 5 HOH A 82 682 140 HOH HOH . I 5 HOH A 83 683 70 HOH HOH . I 5 HOH A 84 684 106 HOH HOH . I 5 HOH A 85 685 163 HOH HOH . I 5 HOH A 86 686 205 HOH HOH . I 5 HOH A 87 687 98 HOH HOH . I 5 HOH A 88 688 178 HOH HOH . I 5 HOH A 89 689 135 HOH HOH . I 5 HOH A 90 690 154 HOH HOH . I 5 HOH A 91 691 112 HOH HOH . I 5 HOH A 92 692 210 HOH HOH . I 5 HOH A 93 693 137 HOH HOH . I 5 HOH A 94 694 75 HOH HOH . I 5 HOH A 95 695 212 HOH HOH . I 5 HOH A 96 696 215 HOH HOH . I 5 HOH A 97 697 149 HOH HOH . I 5 HOH A 98 698 130 HOH HOH . I 5 HOH A 99 699 233 HOH HOH . I 5 HOH A 100 700 161 HOH HOH . I 5 HOH A 101 701 156 HOH HOH . I 5 HOH A 102 702 153 HOH HOH . I 5 HOH A 103 703 174 HOH HOH . I 5 HOH A 104 704 79 HOH HOH . I 5 HOH A 105 705 111 HOH HOH . I 5 HOH A 106 706 201 HOH HOH . I 5 HOH A 107 707 5 HOH HOH . I 5 HOH A 108 708 194 HOH HOH . I 5 HOH A 109 709 229 HOH HOH . I 5 HOH A 110 710 16 HOH HOH . I 5 HOH A 111 711 211 HOH HOH . I 5 HOH A 112 712 167 HOH HOH . I 5 HOH A 113 713 216 HOH HOH . I 5 HOH A 114 714 159 HOH HOH . I 5 HOH A 115 715 166 HOH HOH . I 5 HOH A 116 716 134 HOH HOH . I 5 HOH A 117 717 225 HOH HOH . I 5 HOH A 118 718 42 HOH HOH . I 5 HOH A 119 719 224 HOH HOH . I 5 HOH A 120 720 141 HOH HOH . J 5 HOH B 1 601 29 HOH HOH . J 5 HOH B 2 602 56 HOH HOH . J 5 HOH B 3 603 186 HOH HOH . J 5 HOH B 4 604 87 HOH HOH . J 5 HOH B 5 605 117 HOH HOH . J 5 HOH B 6 606 55 HOH HOH . J 5 HOH B 7 607 66 HOH HOH . J 5 HOH B 8 608 95 HOH HOH . J 5 HOH B 9 609 76 HOH HOH . J 5 HOH B 10 610 48 HOH HOH . J 5 HOH B 11 611 197 HOH HOH . J 5 HOH B 12 612 47 HOH HOH . J 5 HOH B 13 613 4 HOH HOH . J 5 HOH B 14 614 129 HOH HOH . J 5 HOH B 15 615 14 HOH HOH . J 5 HOH B 16 616 13 HOH HOH . J 5 HOH B 17 617 32 HOH HOH . J 5 HOH B 18 618 217 HOH HOH . J 5 HOH B 19 619 17 HOH HOH . J 5 HOH B 20 620 103 HOH HOH . J 5 HOH B 21 621 67 HOH HOH . J 5 HOH B 22 622 10 HOH HOH . J 5 HOH B 23 623 62 HOH HOH . J 5 HOH B 24 624 207 HOH HOH . J 5 HOH B 25 625 107 HOH HOH . J 5 HOH B 26 626 8 HOH HOH . J 5 HOH B 27 627 57 HOH HOH . J 5 HOH B 28 628 91 HOH HOH . J 5 HOH B 29 629 132 HOH HOH . J 5 HOH B 30 630 108 HOH HOH . J 5 HOH B 31 631 18 HOH HOH . J 5 HOH B 32 632 72 HOH HOH . J 5 HOH B 33 633 35 HOH HOH . J 5 HOH B 34 634 124 HOH HOH . J 5 HOH B 35 635 104 HOH HOH . J 5 HOH B 36 636 83 HOH HOH . J 5 HOH B 37 637 68 HOH HOH . J 5 HOH B 38 638 54 HOH HOH . J 5 HOH B 39 639 127 HOH HOH . J 5 HOH B 40 640 73 HOH HOH . J 5 HOH B 41 641 198 HOH HOH . J 5 HOH B 42 642 151 HOH HOH . J 5 HOH B 43 643 51 HOH HOH . J 5 HOH B 44 644 11 HOH HOH . J 5 HOH B 45 645 115 HOH HOH . J 5 HOH B 46 646 27 HOH HOH . J 5 HOH B 47 647 110 HOH HOH . J 5 HOH B 48 648 74 HOH HOH . J 5 HOH B 49 649 77 HOH HOH . J 5 HOH B 50 650 65 HOH HOH . J 5 HOH B 51 651 69 HOH HOH . J 5 HOH B 52 652 189 HOH HOH . J 5 HOH B 53 653 19 HOH HOH . J 5 HOH B 54 654 94 HOH HOH . J 5 HOH B 55 655 53 HOH HOH . J 5 HOH B 56 656 177 HOH HOH . J 5 HOH B 57 657 146 HOH HOH . J 5 HOH B 58 658 99 HOH HOH . J 5 HOH B 59 659 118 HOH HOH . J 5 HOH B 60 660 100 HOH HOH . J 5 HOH B 61 661 157 HOH HOH . J 5 HOH B 62 662 143 HOH HOH . J 5 HOH B 63 663 40 HOH HOH . J 5 HOH B 64 664 192 HOH HOH . J 5 HOH B 65 665 126 HOH HOH . J 5 HOH B 66 666 84 HOH HOH . J 5 HOH B 67 667 173 HOH HOH . J 5 HOH B 68 668 232 HOH HOH . J 5 HOH B 69 669 113 HOH HOH . J 5 HOH B 70 670 105 HOH HOH . J 5 HOH B 71 671 220 HOH HOH . J 5 HOH B 72 672 230 HOH HOH . J 5 HOH B 73 673 175 HOH HOH . J 5 HOH B 74 674 90 HOH HOH . J 5 HOH B 75 675 88 HOH HOH . J 5 HOH B 76 676 203 HOH HOH . J 5 HOH B 77 677 182 HOH HOH . J 5 HOH B 78 678 148 HOH HOH . J 5 HOH B 79 679 208 HOH HOH . J 5 HOH B 80 680 183 HOH HOH . J 5 HOH B 81 681 123 HOH HOH . J 5 HOH B 82 682 187 HOH HOH . J 5 HOH B 83 683 172 HOH HOH . J 5 HOH B 84 684 165 HOH HOH . J 5 HOH B 85 685 160 HOH HOH . J 5 HOH B 86 686 223 HOH HOH . J 5 HOH B 87 687 150 HOH HOH . J 5 HOH B 88 688 97 HOH HOH . J 5 HOH B 89 689 227 HOH HOH . J 5 HOH B 90 690 195 HOH HOH . J 5 HOH B 91 691 170 HOH HOH . J 5 HOH B 92 692 222 HOH HOH . J 5 HOH B 93 693 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J49 . . . G 2 -54.582 -9.243 34.523 1 28.33 ? C1 J49 501 B 1 HETATM 2 C C3 J49 . . . G 2 -52.903 -8.527 35.988 1 30.5 ? C3 J49 501 B 1 HETATM 3 C C4 J49 . . . G 2 -51.977 -9.361 35.325 1 30.25 ? C4 J49 501 B 1 HETATM 4 C C5 J49 . . . G 2 -52.355 -10.107 34.287 1 27.4 ? C5 J49 501 B 1 HETATM 5 C C8 J49 . . . G 2 -50.326 -10.235 36.897 1 35.62 ? C8 J49 501 B 1 HETATM 6 C C10 J49 . . . G 2 -48.388 -10.935 38.373 1 35.62 ? C10 J49 501 B 1 HETATM 7 C C11 J49 . . . G 2 -49.207 -11.251 39.608 1 38.39 ? C11 J49 501 B 1 HETATM 8 C C12 J49 . . . G 2 -48.647 -11.931 40.579 1 33.64 ? C12 J49 501 B 1 HETATM 9 C C13 J49 . . . G 2 -47.209 -12.396 40.434 1 36.38 ? C13 J49 501 B 1 HETATM 10 C C14 J49 . . . G 2 -46.49 -12.115 39.372 1 37.28 ? C14 J49 501 B 1 HETATM 11 C C15 J49 . . . G 2 -47.136 -11.318 38.253 1 41.34 ? C15 J49 501 B 1 HETATM 12 C C16 J49 . . . G 2 -46.587 -13.159 41.583 1 40.68 ? C16 J49 501 B 1 HETATM 13 C C19 J49 . . . G 2 -44.497 -13.997 42.698 1 42.37 ? C19 J49 501 B 1 HETATM 14 C C23 J49 . . . G 2 -43.17 -13.26 42.866 1 44.13 ? C23 J49 501 B 1 HETATM 15 C C26 J49 . . . G 2 -44.3 -15.495 42.495 1 45.88 ? C26 J49 501 B 1 HETATM 16 C C27 J49 . . . G 2 -43.776 -15.787 41.096 1 52.72 ? C27 J49 501 B 1 HETATM 17 C C28 J49 . . . G 2 -43.701 -17.308 40.913 1 61.69 ? C28 J49 501 B 1 HETATM 18 N N2 J49 . . . G 2 -54.221 -8.485 35.574 1 30.01 ? N2 J49 501 B 1 HETATM 19 N N6 J49 . . . G 2 -53.651 -10.064 33.865 1 29.36 ? N6 J49 501 B 1 HETATM 20 N N9 J49 . . . G 2 -48.952 -10.193 37.292 1 39.73 ? N9 J49 501 B 1 HETATM 21 N N17 J49 . . . G 2 -45.149 -13.323 41.595 1 39.07 ? N17 J49 501 B 1 HETATM 22 N N21 J49 . . . G 2 -50.622 -9.388 35.781 1 31.71 ? N21 J49 501 B 1 HETATM 23 N N22 J49 . . . G 2 -51.392 -10.931 33.62 1 31.14 ? N22 J49 501 B 1 HETATM 24 O O7 J49 . . . G 2 -51.156 -10.894 37.452 1 34.39 ? O7 J49 501 B 1 HETATM 25 O O18 J49 . . . G 2 -47.283 -13.569 42.454 1 40.92 ? O18 J49 501 B 1 HETATM 26 O O20 J49 . . . G 2 -52.459 -7.776 37.066 1 35.12 ? O20 J49 501 B 1 HETATM 27 O O24 J49 . . . G 2 -42.611 -12.664 41.892 1 46.81 ? O24 J49 501 B 1 HETATM 28 O O25 J49 . . . G 2 -42.655 -13.22 44.003 1 46.76 ? O25 J49 501 B 1 HETATM 29 O O29 J49 . . . G 2 -44.159 -17.851 39.868 1 62.88 ? O29 J49 501 B 1 HETATM 30 O O30 J49 . . . G 2 -43.179 -18.026 41.812 1 61.97 ? O30 J49 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #