data_7EHL # _model_server_result.job_id N0WEKGx5o0OYUUhHLyrU_Q _model_server_result.datetime_utc '2024-12-26 12:07:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1003}' # _entry.id 7EHL # _exptl.entry_id 7EHL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EHL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 457 A THR 514 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 D O2G ANP . A ANP 902 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc3 D O2B ANP . A ANP 902 1_555 F MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 B OG1 THR 457 B THR 514 1_555 J MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc5 I O2G ANP . B ANP 1003 1_555 J MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc6 I O2B ANP . B ANP 1003 1_555 J MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7EHL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CLR A 1 901 901 CLR CLR . D 3 ANP A 1 902 1101 ANP ANP . E 2 CLR A 1 903 1001 CLR CLR . F 4 MG A 1 904 1 MG MG . G 2 CLR B 1 1001 1001 CLR CLR . H 2 CLR B 1 1002 901 CLR CLR . I 3 ANP B 1 1003 1101 ANP ANP . J 4 MG B 1 1004 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 3 132.03 118.548 168.764 1 149.47 ? PG ANP 1003 B 1 HETATM 2 O O1G ANP . . . I 3 131.072 117.913 167.736 1 149.47 ? O1G ANP 1003 B 1 HETATM 3 O O2G ANP . . . I 3 132.968 117.451 169.346 1 149.47 ? O2G ANP 1003 B 1 HETATM 4 O O3G ANP . . . I 3 131.236 119.153 169.86 1 149.47 ? O3G ANP 1003 B 1 HETATM 5 P PB ANP . . . I 3 133.762 120.979 168.927 1 149.47 ? PB ANP 1003 B 1 HETATM 6 O O1B ANP . . . I 3 132.823 121.462 170.017 1 149.47 ? O1B ANP 1003 B 1 HETATM 7 O O2B ANP . . . I 3 134.972 120.428 169.531 1 149.47 ? O2B ANP 1003 B 1 HETATM 8 N N3B ANP . . . I 3 132.981 119.764 167.991 1 149.47 ? N3B ANP 1003 B 1 HETATM 9 P PA ANP . . . I 3 135.511 122.242 166.822 1 149.47 ? PA ANP 1003 B 1 HETATM 10 O O1A ANP . . . I 3 136.724 121.649 167.492 1 149.47 ? O1A ANP 1003 B 1 HETATM 11 O O2A ANP . . . I 3 135.14 121.421 165.608 1 149.47 ? O2A ANP 1003 B 1 HETATM 12 O O3A ANP . . . I 3 134.177 122.262 167.942 1 149.47 ? O3A ANP 1003 B 1 HETATM 13 O O5' ANP . . . I 3 135.824 123.785 166.355 1 149.47 ? O5' ANP 1003 B 1 HETATM 14 C C5' ANP . . . I 3 135.099 124.809 166.965 1 149.47 ? C5' ANP 1003 B 1 HETATM 15 C C4' ANP . . . I 3 134.25 125.489 165.907 1 149.47 ? C4' ANP 1003 B 1 HETATM 16 O O4' ANP . . . I 3 135.157 125.844 164.65 1 149.47 ? O4' ANP 1003 B 1 HETATM 17 C C3' ANP . . . I 3 133.289 124.665 165.47 1 149.47 ? C3' ANP 1003 B 1 HETATM 18 O O3' ANP . . . I 3 132.031 124.867 166.262 1 149.47 ? O3' ANP 1003 B 1 HETATM 19 C C2' ANP . . . I 3 133.073 125.059 164.041 1 149.47 ? C2' ANP 1003 B 1 HETATM 20 O O2' ANP . . . I 3 132.094 125.978 163.96 1 149.47 ? O2' ANP 1003 B 1 HETATM 21 C C1' ANP . . . I 3 134.436 125.676 163.581 1 149.47 ? C1' ANP 1003 B 1 HETATM 22 N N9 ANP . . . I 3 135.113 124.759 162.688 1 149.47 ? N9 ANP 1003 B 1 HETATM 23 C C8 ANP . . . I 3 135.443 123.556 162.958 1 149.47 ? C8 ANP 1003 B 1 HETATM 24 N N7 ANP . . . I 3 136.055 123.01 161.888 1 149.47 ? N7 ANP 1003 B 1 HETATM 25 C C5 ANP . . . I 3 136.1 123.928 160.917 1 149.47 ? C5 ANP 1003 B 1 HETATM 26 C C6 ANP . . . I 3 136.604 123.946 159.603 1 149.47 ? C6 ANP 1003 B 1 HETATM 27 N N6 ANP . . . I 3 137.241 122.79 159.036 1 149.47 ? N6 ANP 1003 B 1 HETATM 28 N N1 ANP . . . I 3 136.472 125.067 158.901 1 149.47 ? N1 ANP 1003 B 1 HETATM 29 C C2 ANP . . . I 3 135.911 126.096 159.386 1 149.47 ? C2 ANP 1003 B 1 HETATM 30 N N3 ANP . . . I 3 135.421 126.113 160.635 1 149.47 ? N3 ANP 1003 B 1 HETATM 31 C C4 ANP . . . I 3 135.511 125.042 161.4 1 149.47 ? C4 ANP 1003 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #