data_7EHM
#
_model_server_result.job_id            ShnPwXcH51rLI5SemvzG7g 
_model_server_result.datetime_utc      '2024-11-06 22:34:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ehm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7EHM 
#
_exptl.entry_id    7EHM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.361 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7EHM 
_cell.length_a            114.232 
_cell.length_b            114.232 
_cell.length_c            114.164 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EHM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C17 H18 N6 O7' 
_chem_comp.formula_weight    418.361 
_chem_comp.id                J49 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 C23 J49 doub 173 n n 
C23 C19 J49 sing 174 n n 
C23 O24 J49 sing 175 n n 
O18 C16 J49 doub 176 n n 
C19 C26 J49 sing 177 n n 
C19 N17 J49 sing 178 n n 
C26 C27 J49 sing 179 n n 
C16 N17 J49 sing 180 n n 
C16 C13 J49 sing 181 n n 
C27 C28 J49 sing 182 n n 
C12 C13 J49 doub 183 n y 
C12 C11 J49 sing 184 n y 
C13 C14 J49 sing 185 n y 
C28 O30 J49 doub 186 n n 
C28 O29 J49 sing 187 n n 
C11 C10 J49 doub 188 n y 
C14 C15 J49 doub 189 n y 
C10 C15 J49 sing 190 n y 
C10 N9 J49 sing 191 n n 
O7 C8 J49 doub 192 n n 
O20 C3 J49 sing 193 n n 
N9 C8 J49 sing 194 n n 
C8 N21 J49 sing 195 n n 
C3 N2 J49 sing 196 n y 
C3 C4 J49 doub 197 n y 
N2 C1 J49 doub 198 n y 
N21 C4 J49 sing 199 n n 
C4 C5 J49 sing 200 n y 
C1 N6 J49 sing 201 n y 
C5 N6 J49 doub 202 n y 
C5 N22 J49 sing 203 n n 
C1 H1 J49 sing 204 n n 
C11 H2 J49 sing 205 n n 
C12 H3 J49 sing 206 n n 
C14 H4 J49 sing 207 n n 
C15 H5 J49 sing 208 n n 
C19 H6 J49 sing 209 n n 
C26 H7 J49 sing 210 n n 
C26 H8 J49 sing 211 n n 
C27 H9 J49 sing 212 n n 
C27 H10 J49 sing 213 n n 
N9 H12 J49 sing 214 n n 
N17 H13 J49 sing 215 n n 
N21 H14 J49 sing 216 n n 
N22 H15 J49 sing 217 n n 
N22 H16 J49 sing 218 n n 
O24 H17 J49 sing 219 n n 
O29 H18 J49 sing 220 n n 
O20 H11 J49 sing 221 n n 
#
_atom_sites.entry_id                     7EHM 
_atom_sites.fract_transf_matrix[1][1]    0.008754 
_atom_sites.fract_transf_matrix[1][2]    0.005054 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 J4C A 1 401 401 J4C 046 . 
D 3 J49 A 1 402 501 J49 037 . 
E 2 J4C B 1 401 401 J4C 046 . 
F 3 J49 B 1 402 501 J49 037 . 
G 4 HOH A 1 501 162 HOH HOH . 
G 4 HOH A 2 502 163 HOH HOH . 
G 4 HOH A 3 503 122 HOH HOH . 
G 4 HOH A 4 504 139 HOH HOH . 
G 4 HOH A 5 505 191 HOH HOH . 
G 4 HOH A 6 506 43 HOH HOH . 
G 4 HOH A 7 507 90 HOH HOH . 
G 4 HOH A 8 508 134 HOH HOH . 
G 4 HOH A 9 509 158 HOH HOH . 
G 4 HOH A 10 510 21 HOH HOH . 
G 4 HOH A 11 511 151 HOH HOH . 
G 4 HOH A 12 512 10 HOH HOH . 
G 4 HOH A 13 513 3 HOH HOH . 
G 4 HOH A 14 514 108 HOH HOH . 
G 4 HOH A 15 515 29 HOH HOH . 
G 4 HOH A 16 516 115 HOH HOH . 
G 4 HOH A 17 517 62 HOH HOH . 
G 4 HOH A 18 518 95 HOH HOH . 
G 4 HOH A 19 519 37 HOH HOH . 
G 4 HOH A 20 520 119 HOH HOH . 
G 4 HOH A 21 521 137 HOH HOH . 
G 4 HOH A 22 522 27 HOH HOH . 
G 4 HOH A 23 523 126 HOH HOH . 
G 4 HOH A 24 524 22 HOH HOH . 
G 4 HOH A 25 525 32 HOH HOH . 
G 4 HOH A 26 526 118 HOH HOH . 
G 4 HOH A 27 527 59 HOH HOH . 
G 4 HOH A 28 528 4 HOH HOH . 
G 4 HOH A 29 529 153 HOH HOH . 
G 4 HOH A 30 530 44 HOH HOH . 
G 4 HOH A 31 531 17 HOH HOH . 
G 4 HOH A 32 532 46 HOH HOH . 
G 4 HOH A 33 533 140 HOH HOH . 
G 4 HOH A 34 534 41 HOH HOH . 
G 4 HOH A 35 535 159 HOH HOH . 
G 4 HOH A 36 536 52 HOH HOH . 
G 4 HOH A 37 537 130 HOH HOH . 
G 4 HOH A 38 538 14 HOH HOH . 
G 4 HOH A 39 539 111 HOH HOH . 
G 4 HOH A 40 540 33 HOH HOH . 
G 4 HOH A 41 541 157 HOH HOH . 
G 4 HOH A 42 542 76 HOH HOH . 
G 4 HOH A 43 543 5 HOH HOH . 
G 4 HOH A 44 544 99 HOH HOH . 
G 4 HOH A 45 545 49 HOH HOH . 
G 4 HOH A 46 546 42 HOH HOH . 
G 4 HOH A 47 547 51 HOH HOH . 
G 4 HOH A 48 548 96 HOH HOH . 
G 4 HOH A 49 549 93 HOH HOH . 
G 4 HOH A 50 550 182 HOH HOH . 
G 4 HOH A 51 551 40 HOH HOH . 
G 4 HOH A 52 552 169 HOH HOH . 
G 4 HOH A 53 553 196 HOH HOH . 
G 4 HOH A 54 554 94 HOH HOH . 
G 4 HOH A 55 555 25 HOH HOH . 
G 4 HOH A 56 556 91 HOH HOH . 
G 4 HOH A 57 557 85 HOH HOH . 
G 4 HOH A 58 558 47 HOH HOH . 
G 4 HOH A 59 559 20 HOH HOH . 
G 4 HOH A 60 560 132 HOH HOH . 
G 4 HOH A 61 561 176 HOH HOH . 
G 4 HOH A 62 562 128 HOH HOH . 
G 4 HOH A 63 563 164 HOH HOH . 
G 4 HOH A 64 564 113 HOH HOH . 
G 4 HOH A 65 565 89 HOH HOH . 
G 4 HOH A 66 566 39 HOH HOH . 
G 4 HOH A 67 567 87 HOH HOH . 
G 4 HOH A 68 568 28 HOH HOH . 
G 4 HOH A 69 569 185 HOH HOH . 
G 4 HOH A 70 570 72 HOH HOH . 
G 4 HOH A 71 571 117 HOH HOH . 
G 4 HOH A 72 572 74 HOH HOH . 
G 4 HOH A 73 573 102 HOH HOH . 
G 4 HOH A 74 574 167 HOH HOH . 
G 4 HOH A 75 575 60 HOH HOH . 
G 4 HOH A 76 576 120 HOH HOH . 
G 4 HOH A 77 577 110 HOH HOH . 
G 4 HOH A 78 578 200 HOH HOH . 
G 4 HOH A 79 579 45 HOH HOH . 
G 4 HOH A 80 580 146 HOH HOH . 
G 4 HOH A 81 581 124 HOH HOH . 
G 4 HOH A 82 582 127 HOH HOH . 
G 4 HOH A 83 583 154 HOH HOH . 
G 4 HOH A 84 584 104 HOH HOH . 
G 4 HOH A 85 585 57 HOH HOH . 
G 4 HOH A 86 586 125 HOH HOH . 
G 4 HOH A 87 587 198 HOH HOH . 
G 4 HOH A 88 588 156 HOH HOH . 
G 4 HOH A 89 589 170 HOH HOH . 
G 4 HOH A 90 590 181 HOH HOH . 
G 4 HOH A 91 591 197 HOH HOH . 
G 4 HOH A 92 592 199 HOH HOH . 
G 4 HOH A 93 593 144 HOH HOH . 
G 4 HOH A 94 594 100 HOH HOH . 
G 4 HOH A 95 595 103 HOH HOH . 
G 4 HOH A 96 596 26 HOH HOH . 
G 4 HOH A 97 597 97 HOH HOH . 
G 4 HOH A 98 598 129 HOH HOH . 
G 4 HOH A 99 599 190 HOH HOH . 
G 4 HOH A 100 600 201 HOH HOH . 
H 4 HOH B 1 501 187 HOH HOH . 
H 4 HOH B 2 502 15 HOH HOH . 
H 4 HOH B 3 503 195 HOH HOH . 
H 4 HOH B 4 504 172 HOH HOH . 
H 4 HOH B 5 505 70 HOH HOH . 
H 4 HOH B 6 506 174 HOH HOH . 
H 4 HOH B 7 507 135 HOH HOH . 
H 4 HOH B 8 508 114 HOH HOH . 
H 4 HOH B 9 509 9 HOH HOH . 
H 4 HOH B 10 510 7 HOH HOH . 
H 4 HOH B 11 511 192 HOH HOH . 
H 4 HOH B 12 512 8 HOH HOH . 
H 4 HOH B 13 513 65 HOH HOH . 
H 4 HOH B 14 514 138 HOH HOH . 
H 4 HOH B 15 515 1 HOH HOH . 
H 4 HOH B 16 516 166 HOH HOH . 
H 4 HOH B 17 517 136 HOH HOH . 
H 4 HOH B 18 518 31 HOH HOH . 
H 4 HOH B 19 519 161 HOH HOH . 
H 4 HOH B 20 520 11 HOH HOH . 
H 4 HOH B 21 521 133 HOH HOH . 
H 4 HOH B 22 522 24 HOH HOH . 
H 4 HOH B 23 523 79 HOH HOH . 
H 4 HOH B 24 524 19 HOH HOH . 
H 4 HOH B 25 525 63 HOH HOH . 
H 4 HOH B 26 526 2 HOH HOH . 
H 4 HOH B 27 527 145 HOH HOH . 
H 4 HOH B 28 528 6 HOH HOH . 
H 4 HOH B 29 529 112 HOH HOH . 
H 4 HOH B 30 530 61 HOH HOH . 
H 4 HOH B 31 531 23 HOH HOH . 
H 4 HOH B 32 532 68 HOH HOH . 
H 4 HOH B 33 533 82 HOH HOH . 
H 4 HOH B 34 534 58 HOH HOH . 
H 4 HOH B 35 535 165 HOH HOH . 
H 4 HOH B 36 536 12 HOH HOH . 
H 4 HOH B 37 537 83 HOH HOH . 
H 4 HOH B 38 538 50 HOH HOH . 
H 4 HOH B 39 539 54 HOH HOH . 
H 4 HOH B 40 540 38 HOH HOH . 
H 4 HOH B 41 541 67 HOH HOH . 
H 4 HOH B 42 542 18 HOH HOH . 
H 4 HOH B 43 543 73 HOH HOH . 
H 4 HOH B 44 544 16 HOH HOH . 
H 4 HOH B 45 545 77 HOH HOH . 
H 4 HOH B 46 546 56 HOH HOH . 
H 4 HOH B 47 547 123 HOH HOH . 
H 4 HOH B 48 548 35 HOH HOH . 
H 4 HOH B 49 549 143 HOH HOH . 
H 4 HOH B 50 550 66 HOH HOH . 
H 4 HOH B 51 551 53 HOH HOH . 
H 4 HOH B 52 552 75 HOH HOH . 
H 4 HOH B 53 553 55 HOH HOH . 
H 4 HOH B 54 554 71 HOH HOH . 
H 4 HOH B 55 555 147 HOH HOH . 
H 4 HOH B 56 556 155 HOH HOH . 
H 4 HOH B 57 557 36 HOH HOH . 
H 4 HOH B 58 558 69 HOH HOH . 
H 4 HOH B 59 559 78 HOH HOH . 
H 4 HOH B 60 560 121 HOH HOH . 
H 4 HOH B 61 561 81 HOH HOH . 
H 4 HOH B 62 562 84 HOH HOH . 
H 4 HOH B 63 563 105 HOH HOH . 
H 4 HOH B 64 564 92 HOH HOH . 
H 4 HOH B 65 565 109 HOH HOH . 
H 4 HOH B 66 566 149 HOH HOH . 
H 4 HOH B 67 567 107 HOH HOH . 
H 4 HOH B 68 568 48 HOH HOH . 
H 4 HOH B 69 569 34 HOH HOH . 
H 4 HOH B 70 570 194 HOH HOH . 
H 4 HOH B 71 571 101 HOH HOH . 
H 4 HOH B 72 572 179 HOH HOH . 
H 4 HOH B 73 573 152 HOH HOH . 
H 4 HOH B 74 574 150 HOH HOH . 
H 4 HOH B 75 575 88 HOH HOH . 
H 4 HOH B 76 576 183 HOH HOH . 
H 4 HOH B 77 577 180 HOH HOH . 
H 4 HOH B 78 578 30 HOH HOH . 
H 4 HOH B 79 579 86 HOH HOH . 
H 4 HOH B 80 580 106 HOH HOH . 
H 4 HOH B 81 581 64 HOH HOH . 
H 4 HOH B 82 582 98 HOH HOH . 
H 4 HOH B 83 583 160 HOH HOH . 
H 4 HOH B 84 584 193 HOH HOH . 
H 4 HOH B 85 585 13 HOH HOH . 
H 4 HOH B 86 586 189 HOH HOH . 
H 4 HOH B 87 587 141 HOH HOH . 
H 4 HOH B 88 588 186 HOH HOH . 
H 4 HOH B 89 589 142 HOH HOH . 
H 4 HOH B 90 590 178 HOH HOH . 
H 4 HOH B 91 591 116 HOH HOH . 
H 4 HOH B 92 592 188 HOH HOH . 
H 4 HOH B 93 593 177 HOH HOH . 
H 4 HOH B 94 594 80 HOH HOH . 
H 4 HOH B 95 595 131 HOH HOH . 
H 4 HOH B 96 596 202 HOH HOH . 
H 4 HOH B 97 597 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 J49 . . . D 3 8.647 -62.746 -5.449 1 31.83 ? C1 J49 402 A 1 
HETATM 2 C C3 J49 . . . D 3 7.833 -60.983 -6.75 1 32.99 ? C3 J49 402 A 1 
HETATM 3 C C4 J49 . . . D 3 6.671 -60.936 -5.939 1 35.58 ? C4 J49 402 A 1 
HETATM 4 C C5 J49 . . . D 3 6.508 -61.777 -4.91 1 33.26 ? C5 J49 402 A 1 
HETATM 5 C C8 J49 . . . D 3 4.753 -60.272 -7.33 1 36.56 ? C8 J49 402 A 1 
HETATM 6 C C10 J49 . . . D 3 2.742 -59.324 -8.606 1 39.33 ? C10 J49 402 A 1 
HETATM 7 C C11 J49 . . . D 3 3.029 -60.039 -9.92 1 39 ? C11 J49 402 A 1 
HETATM 8 C C12 J49 . . . D 3 2.106 -60.098 -10.882 1 37.18 ? C12 J49 402 A 1 
HETATM 9 C C13 J49 . . . D 3 0.772 -59.408 -10.626 1 40.59 ? C13 J49 402 A 1 
HETATM 10 C C14 J49 . . . D 3 0.501 -58.773 -9.495 1 41.98 ? C14 J49 402 A 1 
HETATM 11 C C15 J49 . . . D 3 1.574 -58.729 -8.403 1 40.35 ? C15 J49 402 A 1 
HETATM 12 C C16 J49 . . . D 3 -0.276 -59.487 -11.708 1 40.17 ? C16 J49 402 A 1 
HETATM 13 C C19 J49 . . . D 3 -2.377 -58.718 -12.672 1 46.26 ? C19 J49 402 A 1 
HETATM 14 C C23 J49 . . . D 3 -2.816 -57.28 -12.993 1 44.5 ? C23 J49 402 A 1 
HETATM 15 C C26 J49 . . . D 3 -3.467 -59.727 -12.259 1 51.11 ? C26 J49 402 A 1 
HETATM 16 C C27 J49 . . . D 3 -4.215 -59.302 -11.021 1 51.46 ? C27 J49 402 A 1 
HETATM 17 C C28 J49 . . . D 3 -4.539 -60.523 -10.151 1 59.38 ? C28 J49 402 A 1 
HETATM 18 N N2 J49 . . . D 3 8.819 -61.907 -6.503 1 32.37 ? N2 J49 402 A 1 
HETATM 19 N N6 J49 . . . D 3 7.489 -62.686 -4.649 1 32.31 ? N6 J49 402 A 1 
HETATM 20 N N9 J49 . . . D 3 3.757 -59.245 -7.583 1 36.28 ? N9 J49 402 A 1 
HETATM 21 N N17 J49 . . . D 3 -1.41 -58.604 -11.606 1 39.73 ? N17 J49 402 A 1 
HETATM 22 N N21 J49 . . . D 3 5.664 -59.969 -6.251 1 37.48 ? N21 J49 402 A 1 
HETATM 23 N N22 J49 . . . D 3 5.314 -61.692 -4.109 1 34.69 ? N22 J49 402 A 1 
HETATM 24 O O7 J49 . . . D 3 4.83 -61.322 -7.91 1 32.37 ? O7 J49 402 A 1 
HETATM 25 O O18 J49 . . . D 3 -0.151 -60.266 -12.596 1 37.02 ? O18 J49 402 A 1 
HETATM 26 O O20 J49 . . . D 3 7.947 -60.095 -7.798 1 34.3 ? O20 J49 402 A 1 
HETATM 27 O O24 J49 . . . D 3 -2.559 -56.347 -12.167 1 41.32 ? O24 J49 402 A 1 
HETATM 28 O O25 J49 . . . D 3 -3.383 -56.996 -14.077 1 39.8 ? O25 J49 402 A 1 
HETATM 29 O O29 J49 . . . D 3 -4.293 -61.699 -10.569 1 60.31 ? O29 J49 402 A 1 
HETATM 30 O O30 J49 . . . D 3 -5.044 -60.385 -8.985 1 58.46 ? O30 J49 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#