data_7EHN # _model_server_result.job_id hzFrNfqeE76kyRlDz6JabA _model_server_result.datetime_utc '2024-11-06 22:34:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7EHN # _exptl.entry_id 7EHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.944 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-[[1-[(4-chloranyl-1H-indol-2-yl)methyl]-3,7-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]amino]-6-methyl-pyrimidin-2-yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EHN _cell.length_a 113.169 _cell.length_b 113.169 _cell.length_c 113.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C24 H23 Cl N8 O4' _chem_comp.formula_weight 522.944 _chem_comp.id J4F _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-[[1-[(4-chloranyl-1H-indol-2-yl)methyl]-3,7-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]amino]-6-methyl-pyrimidin-2-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-(4-((1-((4-chloro-1H-indol-2-yl)methyl)-3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)amino)-6-methylpyrimidin-2-yl)propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBC CBB J4F doub 222 n n CBB OBD J4F sing 223 n n CBB CBA J4F sing 224 n n O2 C2 J4F doub 225 n n CBA CAZ J4F sing 226 n n CAK N3 J4F sing 227 n n C2 N3 J4F sing 228 n n C2 N1 J4F sing 229 n n N3 C4 J4F sing 230 n n CAD N1 J4F sing 231 n n CAD CAA J4F sing 232 n n N1 C6 J4F sing 233 n n CAZ CAU J4F sing 234 n n CL CBG J4F sing 235 n n CAB CAA J4F doub 236 n y CAB CBF J4F sing 237 n y C4 N9 J4F sing 238 n y C4 C5 J4F doub 239 n y N9 C8 J4F doub 240 n y CAA NAC J4F sing 241 n y C6 C5 J4F sing 242 n n C6 O6 J4F doub 243 n n CAU NAT J4F doub 244 n y CAU NAV J4F sing 245 n y C5 N7 J4F sing 246 n y NAT CAS J4F sing 247 n y CBF CBG J4F doub 248 n y CBF CBE J4F sing 249 n y CBG CBH J4F sing 250 n y C8 N7 J4F sing 251 n y C8 NAR J4F sing 252 n n NAV CAW J4F doub 253 n y N7 CAQ J4F sing 254 n n CAS NAR J4F sing 255 n n CAS CAX J4F doub 256 n y NAC CBE J4F sing 257 n y CBE CBJ J4F doub 258 n y CAW CAX J4F sing 259 n y CAW CAY J4F sing 260 n n CBH CBI J4F doub 261 n y CBJ CBI J4F sing 262 n y CAB H1 J4F sing 263 n n CAD H2 J4F sing 264 n n CAD H3 J4F sing 265 n n CAK H4 J4F sing 266 n n CAK H5 J4F sing 267 n n CAK H6 J4F sing 268 n n CAQ H7 J4F sing 269 n n CAQ H8 J4F sing 270 n n CAQ H9 J4F sing 271 n n CAX H10 J4F sing 272 n n CAY H11 J4F sing 273 n n CAY H12 J4F sing 274 n n CAY H13 J4F sing 275 n n CAZ H14 J4F sing 276 n n CAZ H15 J4F sing 277 n n CBA H16 J4F sing 278 n n CBA H17 J4F sing 279 n n CBH H18 J4F sing 280 n n CBI H19 J4F sing 281 n n CBJ H20 J4F sing 282 n n NAC H21 J4F sing 283 n n NAR H22 J4F sing 284 n n OBD H23 J4F sing 285 n n # _atom_sites.entry_id 7EHN _atom_sites.fract_transf_matrix[1][1] 0.008836 _atom_sites.fract_transf_matrix[1][2] 0.005102 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J4F A 1 401 401 J4F 038 . D 3 J49 A 1 402 501 J49 037 . E 2 J4F B 1 401 401 J4F 038 . F 3 J49 B 1 402 501 J49 037 . G 4 HOH A 1 501 42 HOH HOH . G 4 HOH A 2 502 30 HOH HOH . G 4 HOH A 3 503 51 HOH HOH . G 4 HOH A 4 504 22 HOH HOH . G 4 HOH A 5 505 25 HOH HOH . G 4 HOH A 6 506 12 HOH HOH . G 4 HOH A 7 507 70 HOH HOH . G 4 HOH A 8 508 27 HOH HOH . G 4 HOH A 9 509 94 HOH HOH . G 4 HOH A 10 510 11 HOH HOH . G 4 HOH A 11 511 15 HOH HOH . G 4 HOH A 12 512 117 HOH HOH . G 4 HOH A 13 513 119 HOH HOH . G 4 HOH A 14 514 1 HOH HOH . G 4 HOH A 15 515 92 HOH HOH . G 4 HOH A 16 516 110 HOH HOH . G 4 HOH A 17 517 16 HOH HOH . G 4 HOH A 18 518 10 HOH HOH . G 4 HOH A 19 519 49 HOH HOH . G 4 HOH A 20 520 122 HOH HOH . G 4 HOH A 21 521 65 HOH HOH . G 4 HOH A 22 522 46 HOH HOH . G 4 HOH A 23 523 113 HOH HOH . G 4 HOH A 24 524 5 HOH HOH . G 4 HOH A 25 525 58 HOH HOH . G 4 HOH A 26 526 28 HOH HOH . G 4 HOH A 27 527 59 HOH HOH . G 4 HOH A 28 528 23 HOH HOH . G 4 HOH A 29 529 37 HOH HOH . G 4 HOH A 30 530 18 HOH HOH . G 4 HOH A 31 531 47 HOH HOH . G 4 HOH A 32 532 56 HOH HOH . G 4 HOH A 33 533 64 HOH HOH . G 4 HOH A 34 534 13 HOH HOH . G 4 HOH A 35 535 39 HOH HOH . G 4 HOH A 36 536 107 HOH HOH . G 4 HOH A 37 537 111 HOH HOH . G 4 HOH A 38 538 80 HOH HOH . G 4 HOH A 39 539 68 HOH HOH . G 4 HOH A 40 540 67 HOH HOH . G 4 HOH A 41 541 72 HOH HOH . G 4 HOH A 42 542 45 HOH HOH . G 4 HOH A 43 543 63 HOH HOH . G 4 HOH A 44 544 21 HOH HOH . G 4 HOH A 45 545 81 HOH HOH . G 4 HOH A 46 546 103 HOH HOH . G 4 HOH A 47 547 77 HOH HOH . G 4 HOH A 48 548 82 HOH HOH . G 4 HOH A 49 549 87 HOH HOH . G 4 HOH A 50 550 112 HOH HOH . G 4 HOH A 51 551 69 HOH HOH . G 4 HOH A 52 552 124 HOH HOH . G 4 HOH A 53 553 115 HOH HOH . G 4 HOH A 54 554 109 HOH HOH . G 4 HOH A 55 555 78 HOH HOH . G 4 HOH A 56 556 131 HOH HOH . G 4 HOH A 57 557 86 HOH HOH . G 4 HOH A 58 558 79 HOH HOH . G 4 HOH A 59 559 85 HOH HOH . G 4 HOH A 60 560 95 HOH HOH . G 4 HOH A 61 561 127 HOH HOH . G 4 HOH A 62 562 44 HOH HOH . G 4 HOH A 63 563 123 HOH HOH . G 4 HOH A 64 564 71 HOH HOH . H 4 HOH B 1 501 43 HOH HOH . H 4 HOH B 2 502 26 HOH HOH . H 4 HOH B 3 503 102 HOH HOH . H 4 HOH B 4 504 4 HOH HOH . H 4 HOH B 5 505 31 HOH HOH . H 4 HOH B 6 506 98 HOH HOH . H 4 HOH B 7 507 96 HOH HOH . H 4 HOH B 8 508 61 HOH HOH . H 4 HOH B 9 509 35 HOH HOH . H 4 HOH B 10 510 2 HOH HOH . H 4 HOH B 11 511 36 HOH HOH . H 4 HOH B 12 512 7 HOH HOH . H 4 HOH B 13 513 20 HOH HOH . H 4 HOH B 14 514 8 HOH HOH . H 4 HOH B 15 515 116 HOH HOH . H 4 HOH B 16 516 17 HOH HOH . H 4 HOH B 17 517 3 HOH HOH . H 4 HOH B 18 518 91 HOH HOH . H 4 HOH B 19 519 9 HOH HOH . H 4 HOH B 20 520 53 HOH HOH . H 4 HOH B 21 521 55 HOH HOH . H 4 HOH B 22 522 52 HOH HOH . H 4 HOH B 23 523 19 HOH HOH . H 4 HOH B 24 524 6 HOH HOH . H 4 HOH B 25 525 29 HOH HOH . H 4 HOH B 26 526 114 HOH HOH . H 4 HOH B 27 527 14 HOH HOH . H 4 HOH B 28 528 93 HOH HOH . H 4 HOH B 29 529 48 HOH HOH . H 4 HOH B 30 530 38 HOH HOH . H 4 HOH B 31 531 66 HOH HOH . H 4 HOH B 32 532 40 HOH HOH . H 4 HOH B 33 533 106 HOH HOH . H 4 HOH B 34 534 120 HOH HOH . H 4 HOH B 35 535 34 HOH HOH . H 4 HOH B 36 536 62 HOH HOH . H 4 HOH B 37 537 54 HOH HOH . H 4 HOH B 38 538 76 HOH HOH . H 4 HOH B 39 539 24 HOH HOH . H 4 HOH B 40 540 99 HOH HOH . H 4 HOH B 41 541 121 HOH HOH . H 4 HOH B 42 542 101 HOH HOH . H 4 HOH B 43 543 97 HOH HOH . H 4 HOH B 44 544 33 HOH HOH . H 4 HOH B 45 545 84 HOH HOH . H 4 HOH B 46 546 41 HOH HOH . H 4 HOH B 47 547 83 HOH HOH . H 4 HOH B 48 548 73 HOH HOH . H 4 HOH B 49 549 75 HOH HOH . H 4 HOH B 50 550 88 HOH HOH . H 4 HOH B 51 551 89 HOH HOH . H 4 HOH B 52 552 50 HOH HOH . H 4 HOH B 53 553 90 HOH HOH . H 4 HOH B 54 554 125 HOH HOH . H 4 HOH B 55 555 108 HOH HOH . H 4 HOH B 56 556 104 HOH HOH . H 4 HOH B 57 557 32 HOH HOH . H 4 HOH B 58 558 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 J4F . . . E 2 -50.252 -0.602 3.936 0.94 48.47 ? O2 J4F 401 B 1 HETATM 2 N N3 J4F . . . E 2 -49.89 -2.637 3.184 0.94 47.41 ? N3 J4F 401 B 1 HETATM 3 C C4 J4F . . . E 2 -50.238 -3.623 2.36 0.94 43.38 ? C4 J4F 401 B 1 HETATM 4 N N7 J4F . . . E 2 -51.384 -4.61 0.838 0.94 42.13 ? N7 J4F 401 B 1 HETATM 5 C C5 J4F . . . E 2 -51.276 -3.471 1.514 0.94 45.27 ? C5 J4F 401 B 1 HETATM 6 C C6 J4F . . . E 2 -51.978 -2.317 1.489 0.94 44.93 ? C6 J4F 401 B 1 HETATM 7 C C8 J4F . . . E 2 -50.408 -5.416 1.269 0.94 41.96 ? C8 J4F 401 B 1 HETATM 8 C C2 J4F . . . E 2 -50.591 -1.495 3.165 0.94 44.04 ? C2 J4F 401 B 1 HETATM 9 N N1 J4F . . . E 2 -51.639 -1.327 2.331 0.94 45.49 ? N1 J4F 401 B 1 HETATM 10 O O6 J4F . . . E 2 -52.937 -2.138 0.735 0.94 40.81 ? O6 J4F 401 B 1 HETATM 11 N N9 J4F . . . E 2 -49.696 -4.822 2.213 0.94 40.77 ? N9 J4F 401 B 1 HETATM 12 C CAA J4F . . . E 2 -51.642 1.052 1.522 0.94 46.26 ? CAA J4F 401 B 1 HETATM 13 C CAB J4F . . . E 2 -51.368 2.299 1.913 0.94 43.2 ? CAB J4F 401 B 1 HETATM 14 C CAD J4F . . . E 2 -52.396 -0.032 2.325 0.94 41.6 ? CAD J4F 401 B 1 HETATM 15 C CAK J4F . . . E 2 -48.736 -2.809 4.118 0.94 39.61 ? CAK J4F 401 B 1 HETATM 16 C CAQ J4F . . . E 2 -52.388 -4.915 -0.227 0.94 44.4 ? CAQ J4F 401 B 1 HETATM 17 C CAS J4F . . . E 2 -49.191 -7.441 1.212 0.94 45.25 ? CAS J4F 401 B 1 HETATM 18 C CAU J4F . . . E 2 -47.114 -7.921 2.232 0.94 46.55 ? CAU J4F 401 B 1 HETATM 19 C CAW J4F . . . E 2 -48.272 -9.641 1.196 0.94 44.62 ? CAW J4F 401 B 1 HETATM 20 C CAX J4F . . . E 2 -49.289 -8.77 0.84 0.94 43.13 ? CAX J4F 401 B 1 HETATM 21 C CAY J4F . . . E 2 -48.323 -11.117 0.816 0.94 49.37 ? CAY J4F 401 B 1 HETATM 22 C CAZ J4F . . . E 2 -45.797 -7.562 2.963 0.94 45.61 ? CAZ J4F 401 B 1 HETATM 23 C CBA J4F . . . E 2 -45.926 -7.057 4.394 0.94 54.32 ? CBA J4F 401 B 1 HETATM 24 C CBB J4F . . . E 2 -46.768 -8.036 5.195 0.94 52.98 ? CBB J4F 401 B 1 HETATM 25 C CBE J4F . . . E 2 -50.566 1.981 -0.104 0.94 46.57 ? CBE J4F 401 B 1 HETATM 26 C CBF J4F . . . E 2 -50.693 2.869 0.89 0.94 47.06 ? CBF J4F 401 B 1 HETATM 27 C CBG J4F . . . E 2 -50.183 4.092 0.75 0.94 44.89 ? CBG J4F 401 B 1 HETATM 28 C CBH J4F . . . E 2 -49.521 4.487 -0.411 0.94 43.96 ? CBH J4F 401 B 1 HETATM 29 C CBI J4F . . . E 2 -49.388 3.561 -1.442 0.94 44.75 ? CBI J4F 401 B 1 HETATM 30 C CBJ J4F . . . E 2 -49.936 2.297 -1.259 0.94 46.36 ? CBJ J4F 401 B 1 HETATM 31 N NAC J4F . . . E 2 -51.163 0.853 0.3 0.94 45.49 ? NAC J4F 401 B 1 HETATM 32 N NAR J4F . . . E 2 -50.212 -6.655 0.815 0.94 42.64 ? NAR J4F 401 B 1 HETATM 33 N NAT J4F . . . E 2 -48.089 -7.038 1.904 0.94 48.31 ? NAT J4F 401 B 1 HETATM 34 N NAV J4F . . . E 2 -47.222 -9.199 1.87 0.94 44.09 ? NAV J4F 401 B 1 HETATM 35 O OBC J4F . . . E 2 -46.253 -9.153 5.494 0.94 53.3 ? OBC J4F 401 B 1 HETATM 36 O OBD J4F . . . E 2 -47.906 -7.613 5.497 0.94 50.58 ? OBD J4F 401 B 1 HETATM 37 CL CL J4F . . . E 2 -50.385 5.148 2.027 0.94 57.22 ? CL J4F 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #