data_7EHN # _model_server_result.job_id iHibXmvRh8DSU9gMHPpvlQ _model_server_result.datetime_utc '2024-11-06 22:43:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7EHN # _exptl.entry_id 7EHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.361 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EHN _cell.length_a 113.169 _cell.length_b 113.169 _cell.length_c 113.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C17 H18 N6 O7' _chem_comp.formula_weight 418.361 _chem_comp.id J49 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 J49 doub 173 n n C23 C19 J49 sing 174 n n C23 O24 J49 sing 175 n n O18 C16 J49 doub 176 n n C19 C26 J49 sing 177 n n C19 N17 J49 sing 178 n n C26 C27 J49 sing 179 n n C16 N17 J49 sing 180 n n C16 C13 J49 sing 181 n n C27 C28 J49 sing 182 n n C12 C13 J49 doub 183 n y C12 C11 J49 sing 184 n y C13 C14 J49 sing 185 n y C28 O30 J49 doub 186 n n C28 O29 J49 sing 187 n n C11 C10 J49 doub 188 n y C14 C15 J49 doub 189 n y C10 C15 J49 sing 190 n y C10 N9 J49 sing 191 n n O7 C8 J49 doub 192 n n O20 C3 J49 sing 193 n n N9 C8 J49 sing 194 n n C8 N21 J49 sing 195 n n C3 N2 J49 sing 196 n y C3 C4 J49 doub 197 n y N2 C1 J49 doub 198 n y N21 C4 J49 sing 199 n n C4 C5 J49 sing 200 n y C1 N6 J49 sing 201 n y C5 N6 J49 doub 202 n y C5 N22 J49 sing 203 n n C1 H1 J49 sing 204 n n C11 H2 J49 sing 205 n n C12 H3 J49 sing 206 n n C14 H4 J49 sing 207 n n C15 H5 J49 sing 208 n n C19 H6 J49 sing 209 n n C26 H7 J49 sing 210 n n C26 H8 J49 sing 211 n n C27 H9 J49 sing 212 n n C27 H10 J49 sing 213 n n N9 H12 J49 sing 214 n n N17 H13 J49 sing 215 n n N21 H14 J49 sing 216 n n N22 H15 J49 sing 217 n n N22 H16 J49 sing 218 n n O24 H17 J49 sing 219 n n O29 H18 J49 sing 220 n n O20 H11 J49 sing 221 n n # _atom_sites.entry_id 7EHN _atom_sites.fract_transf_matrix[1][1] 0.008836 _atom_sites.fract_transf_matrix[1][2] 0.005102 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J4F A 1 401 401 J4F 038 . D 3 J49 A 1 402 501 J49 037 . E 2 J4F B 1 401 401 J4F 038 . F 3 J49 B 1 402 501 J49 037 . G 4 HOH A 1 501 42 HOH HOH . G 4 HOH A 2 502 30 HOH HOH . G 4 HOH A 3 503 51 HOH HOH . G 4 HOH A 4 504 22 HOH HOH . G 4 HOH A 5 505 25 HOH HOH . G 4 HOH A 6 506 12 HOH HOH . G 4 HOH A 7 507 70 HOH HOH . G 4 HOH A 8 508 27 HOH HOH . G 4 HOH A 9 509 94 HOH HOH . G 4 HOH A 10 510 11 HOH HOH . G 4 HOH A 11 511 15 HOH HOH . G 4 HOH A 12 512 117 HOH HOH . G 4 HOH A 13 513 119 HOH HOH . G 4 HOH A 14 514 1 HOH HOH . G 4 HOH A 15 515 92 HOH HOH . G 4 HOH A 16 516 110 HOH HOH . G 4 HOH A 17 517 16 HOH HOH . G 4 HOH A 18 518 10 HOH HOH . G 4 HOH A 19 519 49 HOH HOH . G 4 HOH A 20 520 122 HOH HOH . G 4 HOH A 21 521 65 HOH HOH . G 4 HOH A 22 522 46 HOH HOH . G 4 HOH A 23 523 113 HOH HOH . G 4 HOH A 24 524 5 HOH HOH . G 4 HOH A 25 525 58 HOH HOH . G 4 HOH A 26 526 28 HOH HOH . G 4 HOH A 27 527 59 HOH HOH . G 4 HOH A 28 528 23 HOH HOH . G 4 HOH A 29 529 37 HOH HOH . G 4 HOH A 30 530 18 HOH HOH . G 4 HOH A 31 531 47 HOH HOH . G 4 HOH A 32 532 56 HOH HOH . G 4 HOH A 33 533 64 HOH HOH . G 4 HOH A 34 534 13 HOH HOH . G 4 HOH A 35 535 39 HOH HOH . G 4 HOH A 36 536 107 HOH HOH . G 4 HOH A 37 537 111 HOH HOH . G 4 HOH A 38 538 80 HOH HOH . G 4 HOH A 39 539 68 HOH HOH . G 4 HOH A 40 540 67 HOH HOH . G 4 HOH A 41 541 72 HOH HOH . G 4 HOH A 42 542 45 HOH HOH . G 4 HOH A 43 543 63 HOH HOH . G 4 HOH A 44 544 21 HOH HOH . G 4 HOH A 45 545 81 HOH HOH . G 4 HOH A 46 546 103 HOH HOH . G 4 HOH A 47 547 77 HOH HOH . G 4 HOH A 48 548 82 HOH HOH . G 4 HOH A 49 549 87 HOH HOH . G 4 HOH A 50 550 112 HOH HOH . G 4 HOH A 51 551 69 HOH HOH . G 4 HOH A 52 552 124 HOH HOH . G 4 HOH A 53 553 115 HOH HOH . G 4 HOH A 54 554 109 HOH HOH . G 4 HOH A 55 555 78 HOH HOH . G 4 HOH A 56 556 131 HOH HOH . G 4 HOH A 57 557 86 HOH HOH . G 4 HOH A 58 558 79 HOH HOH . G 4 HOH A 59 559 85 HOH HOH . G 4 HOH A 60 560 95 HOH HOH . G 4 HOH A 61 561 127 HOH HOH . G 4 HOH A 62 562 44 HOH HOH . G 4 HOH A 63 563 123 HOH HOH . G 4 HOH A 64 564 71 HOH HOH . H 4 HOH B 1 501 43 HOH HOH . H 4 HOH B 2 502 26 HOH HOH . H 4 HOH B 3 503 102 HOH HOH . H 4 HOH B 4 504 4 HOH HOH . H 4 HOH B 5 505 31 HOH HOH . H 4 HOH B 6 506 98 HOH HOH . H 4 HOH B 7 507 96 HOH HOH . H 4 HOH B 8 508 61 HOH HOH . H 4 HOH B 9 509 35 HOH HOH . H 4 HOH B 10 510 2 HOH HOH . H 4 HOH B 11 511 36 HOH HOH . H 4 HOH B 12 512 7 HOH HOH . H 4 HOH B 13 513 20 HOH HOH . H 4 HOH B 14 514 8 HOH HOH . H 4 HOH B 15 515 116 HOH HOH . H 4 HOH B 16 516 17 HOH HOH . H 4 HOH B 17 517 3 HOH HOH . H 4 HOH B 18 518 91 HOH HOH . H 4 HOH B 19 519 9 HOH HOH . H 4 HOH B 20 520 53 HOH HOH . H 4 HOH B 21 521 55 HOH HOH . H 4 HOH B 22 522 52 HOH HOH . H 4 HOH B 23 523 19 HOH HOH . H 4 HOH B 24 524 6 HOH HOH . H 4 HOH B 25 525 29 HOH HOH . H 4 HOH B 26 526 114 HOH HOH . H 4 HOH B 27 527 14 HOH HOH . H 4 HOH B 28 528 93 HOH HOH . H 4 HOH B 29 529 48 HOH HOH . H 4 HOH B 30 530 38 HOH HOH . H 4 HOH B 31 531 66 HOH HOH . H 4 HOH B 32 532 40 HOH HOH . H 4 HOH B 33 533 106 HOH HOH . H 4 HOH B 34 534 120 HOH HOH . H 4 HOH B 35 535 34 HOH HOH . H 4 HOH B 36 536 62 HOH HOH . H 4 HOH B 37 537 54 HOH HOH . H 4 HOH B 38 538 76 HOH HOH . H 4 HOH B 39 539 24 HOH HOH . H 4 HOH B 40 540 99 HOH HOH . H 4 HOH B 41 541 121 HOH HOH . H 4 HOH B 42 542 101 HOH HOH . H 4 HOH B 43 543 97 HOH HOH . H 4 HOH B 44 544 33 HOH HOH . H 4 HOH B 45 545 84 HOH HOH . H 4 HOH B 46 546 41 HOH HOH . H 4 HOH B 47 547 83 HOH HOH . H 4 HOH B 48 548 73 HOH HOH . H 4 HOH B 49 549 75 HOH HOH . H 4 HOH B 50 550 88 HOH HOH . H 4 HOH B 51 551 89 HOH HOH . H 4 HOH B 52 552 50 HOH HOH . H 4 HOH B 53 553 90 HOH HOH . H 4 HOH B 54 554 125 HOH HOH . H 4 HOH B 55 555 108 HOH HOH . H 4 HOH B 56 556 104 HOH HOH . H 4 HOH B 57 557 32 HOH HOH . H 4 HOH B 58 558 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J49 . . . D 3 -57.929 23.802 -5.504 1 33.72 ? C1 J49 402 A 1 HETATM 2 C C3 J49 . . . D 3 -55.989 23.633 -6.822 1 32.53 ? C3 J49 402 A 1 HETATM 3 C C4 J49 . . . D 3 -55.368 24.61 -6.002 1 37.28 ? C4 J49 402 A 1 HETATM 4 C C5 J49 . . . D 3 -56.019 25.149 -4.94 1 35.35 ? C5 J49 402 A 1 HETATM 5 C C8 J49 . . . D 3 -53.821 25.97 -7.353 1 39.4 ? C8 J49 402 A 1 HETATM 6 C C10 J49 . . . D 3 -52.06 27.238 -8.632 1 41.94 ? C10 J49 402 A 1 HETATM 7 C C11 J49 . . . D 3 -52.848 27.334 -9.928 1 44.48 ? C11 J49 402 A 1 HETATM 8 C C12 J49 . . . D 3 -52.452 28.168 -10.896 1 41.82 ? C12 J49 402 A 1 HETATM 9 C C13 J49 . . . D 3 -51.174 28.966 -10.627 1 47.39 ? C13 J49 402 A 1 HETATM 10 C C14 J49 . . . D 3 -50.462 28.872 -9.522 1 46.15 ? C14 J49 402 A 1 HETATM 11 C C15 J49 . . . D 3 -50.952 27.938 -8.444 1 43.44 ? C15 J49 402 A 1 HETATM 12 C C16 J49 . . . D 3 -50.68 29.904 -11.683 1 43.42 ? C16 J49 402 A 1 HETATM 13 C C19 J49 . . . D 3 -48.881 31.298 -12.647 1 50 ? C19 J49 402 A 1 HETATM 14 C C23 J49 . . . D 3 -47.43 30.906 -12.94 1 44.66 ? C23 J49 402 A 1 HETATM 15 C C26 J49 . . . D 3 -49.065 32.804 -12.335 1 50.76 ? C26 J49 402 A 1 HETATM 16 C C27 J49 . . . D 3 -48.753 33.121 -10.898 1 50.31 ? C27 J49 402 A 1 HETATM 17 C C28 J49 . . . D 3 -49.632 34.27 -10.379 1 57.56 ? C28 J49 402 A 1 HETATM 18 N N2 J49 . . . D 3 -57.28 23.244 -6.564 1 31.07 ? N2 J49 402 A 1 HETATM 19 N N6 J49 . . . D 3 -57.317 24.775 -4.683 1 35.18 ? N6 J49 402 A 1 HETATM 20 N N9 J49 . . . D 3 -52.458 26.318 -7.591 1 38.84 ? N9 J49 402 A 1 HETATM 21 N N17 J49 . . . D 3 -49.343 30.422 -11.563 1 45.39 ? N17 J49 402 A 1 HETATM 22 N N21 J49 . . . D 3 -54.026 24.987 -6.322 1 35.17 ? N21 J49 402 A 1 HETATM 23 N N22 J49 . . . D 3 -55.351 26.129 -4.134 1 34.32 ? N22 J49 402 A 1 HETATM 24 O O7 J49 . . . D 3 -54.737 26.462 -7.961 1 40.26 ? O7 J49 402 A 1 HETATM 25 O O18 J49 . . . D 3 -51.408 30.193 -12.554 1 41.77 ? O18 J49 402 A 1 HETATM 26 O O20 J49 . . . D 3 -55.234 23.111 -7.858 1 35.01 ? O20 J49 402 A 1 HETATM 27 O O24 J49 . . . D 3 -46.726 30.307 -12.074 1 45.29 ? O24 J49 402 A 1 HETATM 28 O O25 J49 . . . D 3 -46.902 31.193 -14.042 1 45.52 ? O25 J49 402 A 1 HETATM 29 O O29 J49 . . . D 3 -50.43 34.864 -11.129 1 61.29 ? O29 J49 402 A 1 HETATM 30 O O30 J49 . . . D 3 -49.602 34.67 -9.18 1 60.35 ? O30 J49 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #