data_7EHV # _model_server_result.job_id ydJrxmCuXvRPwt1XCT1O9A _model_server_result.datetime_utc '2024-11-06 22:40:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7EHV # _exptl.entry_id 7EHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3,4-dichlorobenzyl)-8-(((1R,4R)-4-hydroxycyclohexyl)amino)-3,7-dimethyl-3,7-dihydro-1H-purine-2,6-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EHV _cell.length_a 112.889 _cell.length_b 112.889 _cell.length_c 113.883 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 131 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 166 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 131 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 166 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.649 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H23 Cl2 N5 O3' _chem_comp.formula_weight 452.334 _chem_comp.id J4L _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3,4-dichlorobenzyl)-8-(((1R,4R)-4-hydroxycyclohexyl)amino)-3,7-dimethyl-3,7-dihydro-1H-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAW N3 J4L sing 222 n n O2 C2 J4L doub 223 n n C2 N3 J4L sing 224 n n C2 N1 J4L sing 225 n n N3 C4 J4L sing 226 n n CAL CAM J4L doub 227 n y CAL CAK J4L sing 228 n y CAP N1 J4L sing 229 n n CAP CAK J4L sing 230 n n N1 C6 J4L sing 231 n n C4 N9 J4L sing 232 n y C4 C5 J4L doub 233 n y CAM CAH J4L sing 234 n y N9 C8 J4L doub 235 n y CAK CAJ J4L doub 236 n y C6 C5 J4L sing 237 n n C6 O6 J4L doub 238 n n C5 N7 J4L sing 239 n y C8 N7 J4L sing 240 n y C8 NBD J4L sing 241 n n CAB CAC J4L sing 242 n n CAB CAA J4L sing 243 n n CAH CL1 J4L sing 244 n n CAH CAI J4L doub 245 n y N7 CBC J4L sing 246 n n CAD CAC J4L sing 247 n n CAD CAE J4L sing 248 n n CAD OAG J4L sing 249 n n NBD CAA J4L sing 250 n n CAF CAA J4L sing 251 n n CAF CAE J4L sing 252 n n CAJ CAI J4L sing 253 n y CAI CL2 J4L sing 254 n n CAA H1 J4L sing 255 n n CAB H2 J4L sing 256 n n CAB H3 J4L sing 257 n n CAC H4 J4L sing 258 n n CAC H5 J4L sing 259 n n CAD H6 J4L sing 260 n n CAE H7 J4L sing 261 n n CAE H8 J4L sing 262 n n CAF H9 J4L sing 263 n n CAF H10 J4L sing 264 n n CAJ H11 J4L sing 265 n n CAL H12 J4L sing 266 n n CAM H13 J4L sing 267 n n CAP H14 J4L sing 268 n n CAP H15 J4L sing 269 n n CAW H16 J4L sing 270 n n CAW H17 J4L sing 271 n n CAW H18 J4L sing 272 n n CBC H19 J4L sing 273 n n CBC H20 J4L sing 274 n n CBC H21 J4L sing 275 n n NBD H22 J4L sing 276 n n OAG H23 J4L sing 277 n n # _atom_sites.entry_id 7EHV _atom_sites.fract_transf_matrix[1][1] 0.008858 _atom_sites.fract_transf_matrix[1][2] 0.005114 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J4L A 1 401 401 J4L 034 . D 3 J49 A 1 402 501 J49 037 . E 2 J4L B 1 401 401 J4L 034 . F 3 J49 B 1 402 501 J49 037 . G 4 HOH A 1 501 13 HOH HOH . G 4 HOH A 2 502 26 HOH HOH . G 4 HOH A 3 503 12 HOH HOH . G 4 HOH A 4 504 28 HOH HOH . G 4 HOH A 5 505 20 HOH HOH . G 4 HOH A 6 506 27 HOH HOH . G 4 HOH A 7 507 10 HOH HOH . G 4 HOH A 8 508 4 HOH HOH . G 4 HOH A 9 509 8 HOH HOH . G 4 HOH A 10 510 14 HOH HOH . H 4 HOH B 1 501 15 HOH HOH . H 4 HOH B 2 502 6 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 3 HOH HOH . H 4 HOH B 5 505 21 HOH HOH . H 4 HOH B 6 506 19 HOH HOH . H 4 HOH B 7 507 17 HOH HOH . H 4 HOH B 8 508 7 HOH HOH . H 4 HOH B 9 509 25 HOH HOH . H 4 HOH B 10 510 23 HOH HOH . H 4 HOH B 11 511 16 HOH HOH . H 4 HOH B 12 512 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 J4L . . . C 2 -52.834 16.627 -3.631 0.9 52.72 ? C2 J4L 401 A 1 HETATM 2 C C4 J4L . . . C 2 -53.215 18.731 -2.751 0.9 53.3 ? C4 J4L 401 A 1 HETATM 3 C C8 J4L . . . C 2 -54.019 20.326 -1.625 0.9 47 ? C8 J4L 401 A 1 HETATM 4 C C5 J4L . . . C 2 -54.205 18.229 -1.975 0.9 50.85 ? C5 J4L 401 A 1 HETATM 5 C C6 J4L . . . C 2 -54.508 16.92 -2.023 0.9 50.29 ? C6 J4L 401 A 1 HETATM 6 C CAA J4L . . . C 2 -53.476 22.688 -0.799 0.9 51.75 ? CAA J4L 401 A 1 HETATM 7 C CAB J4L . . . C 2 -54.054 23.91 -1.506 0.9 46.56 ? CAB J4L 401 A 1 HETATM 8 C CAC J4L . . . C 2 -53.42 25.133 -0.896 0.9 46.08 ? CAC J4L 401 A 1 HETATM 9 C CAD J4L . . . C 2 -51.937 25.084 -1.17 0.9 53.04 ? CAD J4L 401 A 1 HETATM 10 C CAE J4L . . . C 2 -51.291 23.824 -0.576 0.9 48.07 ? CAE J4L 401 A 1 HETATM 11 C CAF J4L . . . C 2 -51.988 22.56 -1.097 0.9 50.06 ? CAF J4L 401 A 1 HETATM 12 C CAH J4L . . . C 2 -51.354 12.001 -1.295 0.9 62.01 ? CAH J4L 401 A 1 HETATM 13 C CAI J4L . . . C 2 -51.83 13.041 -0.506 0.9 60.66 ? CAI J4L 401 A 1 HETATM 14 C CAJ J4L . . . C 2 -52.757 13.938 -0.998 0.9 52.43 ? CAJ J4L 401 A 1 HETATM 15 C CAK J4L . . . C 2 -53.184 13.761 -2.3 0.9 58.34 ? CAK J4L 401 A 1 HETATM 16 C CAL J4L . . . C 2 -52.711 12.718 -3.101 0.9 55.64 ? CAL J4L 401 A 1 HETATM 17 C CAM J4L . . . C 2 -51.782 11.824 -2.598 0.9 55.82 ? CAM J4L 401 A 1 HETATM 18 C CAP J4L . . . C 2 -54.211 14.711 -2.869 0.9 53.24 ? CAP J4L 401 A 1 HETATM 19 C CAW J4L . . . C 2 -51.445 18.471 -4.409 0.9 43.06 ? CAW J4L 401 A 1 HETATM 20 C CBC J4L . . . C 2 -55.809 19.247 -0.323 0.9 43.76 ? CBC J4L 401 A 1 HETATM 21 N N1 J4L . . . C 2 -53.814 16.125 -2.838 0.9 54.44 ? N1 J4L 401 A 1 HETATM 22 N N3 J4L . . . C 2 -52.529 17.931 -3.578 0.9 48.86 ? N3 J4L 401 A 1 HETATM 23 N N7 J4L . . . C 2 -54.713 19.245 -1.293 0.9 43.87 ? N7 J4L 401 A 1 HETATM 24 N N9 J4L . . . C 2 -53.108 20.04 -2.54 0.9 51.46 ? N9 J4L 401 A 1 HETATM 25 N NBD J4L . . . C 2 -54.319 21.515 -1.116 0.9 51.26 ? NBD J4L 401 A 1 HETATM 26 O O2 J4L . . . C 2 -52.2 15.906 -4.399 0.9 51.33 ? O2 J4L 401 A 1 HETATM 27 O O6 J4L . . . C 2 -55.402 16.398 -1.356 0.9 45.74 ? O6 J4L 401 A 1 HETATM 28 O OAG J4L . . . C 2 -51.366 26.231 -0.571 0.9 63.67 ? OAG J4L 401 A 1 HETATM 29 CL CL1 J4L . . . C 2 -50.24 10.969 -0.633 0.9 77.37 ? CL1 J4L 401 A 1 HETATM 30 CL CL2 J4L . . . C 2 -51.255 13.191 1.092 0.9 76.67 ? CL2 J4L 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #