data_7EHV # _model_server_result.job_id A_SXqAga9QUMETlRqLgAoA _model_server_result.datetime_utc '2024-11-06 22:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7EHV # _exptl.entry_id 7EHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.361 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EHV _cell.length_a 112.889 _cell.length_b 112.889 _cell.length_c 113.883 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 131 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 166 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 131 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 166 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.649 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H18 N6 O7' _chem_comp.formula_weight 418.361 _chem_comp.id J49 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 J49 doub 173 n n C23 C19 J49 sing 174 n n C23 O24 J49 sing 175 n n O18 C16 J49 doub 176 n n C19 C26 J49 sing 177 n n C19 N17 J49 sing 178 n n C26 C27 J49 sing 179 n n C16 N17 J49 sing 180 n n C16 C13 J49 sing 181 n n C27 C28 J49 sing 182 n n C12 C13 J49 doub 183 n y C12 C11 J49 sing 184 n y C13 C14 J49 sing 185 n y C28 O30 J49 doub 186 n n C28 O29 J49 sing 187 n n C11 C10 J49 doub 188 n y C14 C15 J49 doub 189 n y C10 C15 J49 sing 190 n y C10 N9 J49 sing 191 n n O7 C8 J49 doub 192 n n O20 C3 J49 sing 193 n n N9 C8 J49 sing 194 n n C8 N21 J49 sing 195 n n C3 N2 J49 sing 196 n y C3 C4 J49 doub 197 n y N2 C1 J49 doub 198 n y N21 C4 J49 sing 199 n n C4 C5 J49 sing 200 n y C1 N6 J49 sing 201 n y C5 N6 J49 doub 202 n y C5 N22 J49 sing 203 n n C1 H1 J49 sing 204 n n C11 H2 J49 sing 205 n n C12 H3 J49 sing 206 n n C14 H4 J49 sing 207 n n C15 H5 J49 sing 208 n n C19 H6 J49 sing 209 n n C26 H7 J49 sing 210 n n C26 H8 J49 sing 211 n n C27 H9 J49 sing 212 n n C27 H10 J49 sing 213 n n N9 H12 J49 sing 214 n n N17 H13 J49 sing 215 n n N21 H14 J49 sing 216 n n N22 H15 J49 sing 217 n n N22 H16 J49 sing 218 n n O24 H17 J49 sing 219 n n O29 H18 J49 sing 220 n n O20 H11 J49 sing 221 n n # _atom_sites.entry_id 7EHV _atom_sites.fract_transf_matrix[1][1] 0.008858 _atom_sites.fract_transf_matrix[1][2] 0.005114 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J4L A 1 401 401 J4L 034 . D 3 J49 A 1 402 501 J49 037 . E 2 J4L B 1 401 401 J4L 034 . F 3 J49 B 1 402 501 J49 037 . G 4 HOH A 1 501 13 HOH HOH . G 4 HOH A 2 502 26 HOH HOH . G 4 HOH A 3 503 12 HOH HOH . G 4 HOH A 4 504 28 HOH HOH . G 4 HOH A 5 505 20 HOH HOH . G 4 HOH A 6 506 27 HOH HOH . G 4 HOH A 7 507 10 HOH HOH . G 4 HOH A 8 508 4 HOH HOH . G 4 HOH A 9 509 8 HOH HOH . G 4 HOH A 10 510 14 HOH HOH . H 4 HOH B 1 501 15 HOH HOH . H 4 HOH B 2 502 6 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 3 HOH HOH . H 4 HOH B 5 505 21 HOH HOH . H 4 HOH B 6 506 19 HOH HOH . H 4 HOH B 7 507 17 HOH HOH . H 4 HOH B 8 508 7 HOH HOH . H 4 HOH B 9 509 25 HOH HOH . H 4 HOH B 10 510 23 HOH HOH . H 4 HOH B 11 511 16 HOH HOH . H 4 HOH B 12 512 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J49 . . . D 3 -57.884 23.72 -5.446 1 42.83 ? C1 J49 402 A 1 HETATM 2 C C3 J49 . . . D 3 -55.872 23.701 -6.669 1 40.63 ? C3 J49 402 A 1 HETATM 3 C C4 J49 . . . D 3 -55.341 24.686 -5.796 1 43.52 ? C4 J49 402 A 1 HETATM 4 C C5 J49 . . . D 3 -56.049 25.184 -4.762 1 43.18 ? C5 J49 402 A 1 HETATM 5 C C8 J49 . . . D 3 -53.708 25.913 -7.253 1 44.75 ? C8 J49 402 A 1 HETATM 6 C C10 J49 . . . D 3 -52.044 27.132 -8.623 1 45.19 ? C10 J49 402 A 1 HETATM 7 C C11 J49 . . . D 3 -52.946 27.326 -9.846 1 48.85 ? C11 J49 402 A 1 HETATM 8 C C12 J49 . . . D 3 -52.583 28.166 -10.827 1 47.04 ? C12 J49 402 A 1 HETATM 9 C C13 J49 . . . D 3 -51.267 28.948 -10.658 1 51.9 ? C13 J49 402 A 1 HETATM 10 C C14 J49 . . . D 3 -50.485 28.788 -9.607 1 53.46 ? C14 J49 402 A 1 HETATM 11 C C15 J49 . . . D 3 -50.92 27.825 -8.498 1 49.22 ? C15 J49 402 A 1 HETATM 12 C C16 J49 . . . D 3 -50.781 29.95 -11.698 1 51.48 ? C16 J49 402 A 1 HETATM 13 C C19 J49 . . . D 3 -48.867 31.202 -12.605 1 52.23 ? C19 J49 402 A 1 HETATM 14 C C23 J49 . . . D 3 -47.384 30.923 -12.78 1 54.46 ? C23 J49 402 A 1 HETATM 15 C C26 J49 . . . D 3 -49.023 32.659 -12.242 1 58.53 ? C26 J49 402 A 1 HETATM 16 C C27 J49 . . . D 3 -48.968 32.928 -10.748 1 65.17 ? C27 J49 402 A 1 HETATM 17 C C28 J49 . . . D 3 -49.385 34.423 -10.699 1 71.36 ? C28 J49 402 A 1 HETATM 18 N N2 J49 . . . D 3 -57.169 23.195 -6.502 1 38.5 ? N2 J49 402 A 1 HETATM 19 N N6 J49 . . . D 3 -57.346 24.717 -4.562 1 39.13 ? N6 J49 402 A 1 HETATM 20 N N9 J49 . . . D 3 -52.354 26.283 -7.515 1 39.14 ? N9 J49 402 A 1 HETATM 21 N N17 J49 . . . D 3 -49.36 30.297 -11.607 1 50.32 ? N17 J49 402 A 1 HETATM 22 N N21 J49 . . . D 3 -53.979 25.111 -6.062 1 49 ? N21 J49 402 A 1 HETATM 23 N N22 J49 . . . D 3 -55.387 26.18 -3.918 1 42.91 ? N22 J49 402 A 1 HETATM 24 O O7 J49 . . . D 3 -54.594 26.251 -7.982 1 49.2 ? O7 J49 402 A 1 HETATM 25 O O18 J49 . . . D 3 -51.545 30.444 -12.494 1 46.31 ? O18 J49 402 A 1 HETATM 26 O O20 J49 . . . D 3 -54.989 23.278 -7.667 1 46.48 ? O20 J49 402 A 1 HETATM 27 O O24 J49 . . . D 3 -46.688 30.562 -11.772 1 51.16 ? O24 J49 402 A 1 HETATM 28 O O25 J49 . . . D 3 -46.909 31.073 -13.959 1 55.98 ? O25 J49 402 A 1 HETATM 29 O O29 J49 . . . D 3 -49.779 34.94 -9.596 1 70.36 ? O29 J49 402 A 1 HETATM 30 O O30 J49 . . . D 3 -49.315 35.131 -11.792 1 73.4 ? O30 J49 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 30 #