data_7EHV # _model_server_result.job_id VTNGsiVe_NBl-Vy24VcHsw _model_server_result.datetime_utc '2024-11-06 22:33:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 7EHV # _exptl.entry_id 7EHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.361 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7EHV _cell.length_a 112.889 _cell.length_b 112.889 _cell.length_c 113.883 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 131 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 166 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 131 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 166 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.649 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H18 N6 O7' _chem_comp.formula_weight 418.361 _chem_comp.id J49 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[(4-azanyl-6-oxidanyl-pyrimidin-5-yl)carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(4-(3-(4-amino-6-hydroxypyrimidin-5-yl)ureido)benzoyl)-L-glutamic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C23 J49 doub 173 n n C23 C19 J49 sing 174 n n C23 O24 J49 sing 175 n n O18 C16 J49 doub 176 n n C19 C26 J49 sing 177 n n C19 N17 J49 sing 178 n n C26 C27 J49 sing 179 n n C16 N17 J49 sing 180 n n C16 C13 J49 sing 181 n n C27 C28 J49 sing 182 n n C12 C13 J49 doub 183 n y C12 C11 J49 sing 184 n y C13 C14 J49 sing 185 n y C28 O30 J49 doub 186 n n C28 O29 J49 sing 187 n n C11 C10 J49 doub 188 n y C14 C15 J49 doub 189 n y C10 C15 J49 sing 190 n y C10 N9 J49 sing 191 n n O7 C8 J49 doub 192 n n O20 C3 J49 sing 193 n n N9 C8 J49 sing 194 n n C8 N21 J49 sing 195 n n C3 N2 J49 sing 196 n y C3 C4 J49 doub 197 n y N2 C1 J49 doub 198 n y N21 C4 J49 sing 199 n n C4 C5 J49 sing 200 n y C1 N6 J49 sing 201 n y C5 N6 J49 doub 202 n y C5 N22 J49 sing 203 n n C1 H1 J49 sing 204 n n C11 H2 J49 sing 205 n n C12 H3 J49 sing 206 n n C14 H4 J49 sing 207 n n C15 H5 J49 sing 208 n n C19 H6 J49 sing 209 n n C26 H7 J49 sing 210 n n C26 H8 J49 sing 211 n n C27 H9 J49 sing 212 n n C27 H10 J49 sing 213 n n N9 H12 J49 sing 214 n n N17 H13 J49 sing 215 n n N21 H14 J49 sing 216 n n N22 H15 J49 sing 217 n n N22 H16 J49 sing 218 n n O24 H17 J49 sing 219 n n O29 H18 J49 sing 220 n n O20 H11 J49 sing 221 n n # _atom_sites.entry_id 7EHV _atom_sites.fract_transf_matrix[1][1] 0.008858 _atom_sites.fract_transf_matrix[1][2] 0.005114 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J4L A 1 401 401 J4L 034 . D 3 J49 A 1 402 501 J49 037 . E 2 J4L B 1 401 401 J4L 034 . F 3 J49 B 1 402 501 J49 037 . G 4 HOH A 1 501 13 HOH HOH . G 4 HOH A 2 502 26 HOH HOH . G 4 HOH A 3 503 12 HOH HOH . G 4 HOH A 4 504 28 HOH HOH . G 4 HOH A 5 505 20 HOH HOH . G 4 HOH A 6 506 27 HOH HOH . G 4 HOH A 7 507 10 HOH HOH . G 4 HOH A 8 508 4 HOH HOH . G 4 HOH A 9 509 8 HOH HOH . G 4 HOH A 10 510 14 HOH HOH . H 4 HOH B 1 501 15 HOH HOH . H 4 HOH B 2 502 6 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 3 HOH HOH . H 4 HOH B 5 505 21 HOH HOH . H 4 HOH B 6 506 19 HOH HOH . H 4 HOH B 7 507 17 HOH HOH . H 4 HOH B 8 508 7 HOH HOH . H 4 HOH B 9 509 25 HOH HOH . H 4 HOH B 10 510 23 HOH HOH . H 4 HOH B 11 511 16 HOH HOH . H 4 HOH B 12 512 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J49 . . . F 3 -53.249 -9.388 5.225 1 42.27 ? C1 J49 402 B 1 HETATM 2 C C3 J49 . . . F 3 -51.554 -8.519 6.597 1 39.94 ? C3 J49 402 B 1 HETATM 3 C C4 J49 . . . F 3 -50.616 -9.372 5.949 1 41.95 ? C4 J49 402 B 1 HETATM 4 C C5 J49 . . . F 3 -50.968 -10.219 4.974 1 43.15 ? C5 J49 402 B 1 HETATM 5 C C8 J49 . . . F 3 -49.037 -9.997 7.612 1 41.88 ? C8 J49 402 B 1 HETATM 6 C C10 J49 . . . F 3 -47.208 -10.671 9.338 1 43.08 ? C10 J49 402 B 1 HETATM 7 C C11 J49 . . . F 3 -48.032 -10.852 10.611 1 43.44 ? C11 J49 402 B 1 HETATM 8 C C12 J49 . . . F 3 -47.498 -11.453 11.684 1 42.27 ? C12 J49 402 B 1 HETATM 9 C C13 J49 . . . F 3 -46.06 -11.99 11.598 1 49.68 ? C13 J49 402 B 1 HETATM 10 C C14 J49 . . . F 3 -45.329 -11.824 10.508 1 51.66 ? C14 J49 402 B 1 HETATM 11 C C15 J49 . . . F 3 -45.967 -11.144 9.287 1 44.4 ? C15 J49 402 B 1 HETATM 12 C C16 J49 . . . F 3 -45.392 -12.715 12.755 1 53.16 ? C16 J49 402 B 1 HETATM 13 C C19 J49 . . . F 3 -43.327 -13.499 13.86 1 56.02 ? C19 J49 402 B 1 HETATM 14 C C23 J49 . . . F 3 -42.056 -12.699 14.159 1 55.85 ? C23 J49 402 B 1 HETATM 15 C C26 J49 . . . F 3 -43.049 -15.003 13.614 1 57.08 ? C26 J49 402 B 1 HETATM 16 C C27 J49 . . . F 3 -42.313 -15.284 12.297 1 67.1 ? C27 J49 402 B 1 HETATM 17 C C28 J49 . . . F 3 -42.877 -16.594 11.647 1 75.58 ? C28 J49 402 B 1 HETATM 18 N N2 J49 . . . F 3 -52.885 -8.523 6.21 1 38.9 ? N2 J49 402 B 1 HETATM 19 N N6 J49 . . . F 3 -52.296 -10.235 4.592 1 42.54 ? N6 J49 402 B 1 HETATM 20 N N9 J49 . . . F 3 -47.68 -10.037 8.122 1 41.62 ? N9 J49 402 B 1 HETATM 21 N N17 J49 . . . F 3 -43.929 -12.831 12.71 1 57.38 ? N17 J49 402 B 1 HETATM 22 N N21 J49 . . . F 3 -49.233 -9.372 6.341 1 46.5 ? N21 J49 402 B 1 HETATM 23 N N22 J49 . . . F 3 -49.926 -11.061 4.35 1 43.17 ? N22 J49 402 B 1 HETATM 24 O O7 J49 . . . F 3 -50.019 -10.423 8.144 1 43.79 ? O7 J49 402 B 1 HETATM 25 O O18 J49 . . . F 3 -46.029 -13.206 13.671 1 58.4 ? O18 J49 402 B 1 HETATM 26 O O20 J49 . . . F 3 -51.091 -7.695 7.616 1 41.09 ? O20 J49 402 B 1 HETATM 27 O O24 J49 . . . F 3 -41.396 -12.196 13.194 1 57.89 ? O24 J49 402 B 1 HETATM 28 O O25 J49 . . . F 3 -41.687 -12.543 15.368 1 60.26 ? O25 J49 402 B 1 HETATM 29 O O29 J49 . . . F 3 -43.495 -17.45 12.403 1 73.62 ? O29 J49 402 B 1 HETATM 30 O O30 J49 . . . F 3 -42.782 -16.836 10.357 1 78.15 ? O30 J49 402 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #