data_7EHY # _model_server_result.job_id X3ARoiUZe1akfBbp_KPpTg _model_server_result.datetime_utc '2024-10-19 03:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ehy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7EHY # _exptl.entry_id 7EHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2,4-dimethyl-5-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-pyrrol-3-yl]ethanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EHY _cell.length_a 32.14 _cell.length_b 47.32 _cell.length_c 78.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H25 N5 O' _chem_comp.formula_weight 351.445 _chem_comp.id YD8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2,4-dimethyl-5-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-pyrrol-3-yl]ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C18 YD8 sing 376 n n C4 C3 YD8 doub 377 n y C4 C5 YD8 sing 378 n y N14 C3 YD8 sing 379 n y N14 C15 YD8 sing 380 n y C18 C19 YD8 sing 381 n y C18 C17 YD8 doub 382 n y O25 C23 YD8 doub 383 n n C24 C23 YD8 sing 384 n n C23 C19 YD8 sing 385 n n C3 C2 YD8 sing 386 n y C19 C20 YD8 doub 387 n y C5 C6 YD8 doub 388 n y C15 C17 YD8 sing 389 n n C15 N16 YD8 doub 390 n y C17 N21 YD8 sing 391 n y C8 N7 YD8 sing 392 n n C8 C9 YD8 sing 393 n n C20 N21 YD8 sing 394 n y C20 C22 YD8 sing 395 n n C2 N16 YD8 sing 396 n y C2 C1 YD8 doub 397 n y C6 C1 YD8 sing 398 n y C6 N7 YD8 sing 399 n n N7 C12 YD8 sing 400 n n C9 N10 YD8 sing 401 n n N10 C13 YD8 sing 402 n n N10 C11 YD8 sing 403 n n C11 C12 YD8 sing 404 n n C1 H1 YD8 sing 405 n n C11 H2 YD8 sing 406 n n C11 H3 YD8 sing 407 n n C12 H4 YD8 sing 408 n n C12 H5 YD8 sing 409 n n C13 H6 YD8 sing 410 n n C13 H7 YD8 sing 411 n n C13 H8 YD8 sing 412 n n C22 H9 YD8 sing 413 n n C22 H10 YD8 sing 414 n n C22 H11 YD8 sing 415 n n C24 H12 YD8 sing 416 n n C24 H13 YD8 sing 417 n n C24 H14 YD8 sing 418 n n C26 H15 YD8 sing 419 n n C26 H16 YD8 sing 420 n n C26 H17 YD8 sing 421 n n C4 H18 YD8 sing 422 n n C5 H19 YD8 sing 423 n n C8 H20 YD8 sing 424 n n C8 H21 YD8 sing 425 n n C9 H22 YD8 sing 426 n n C9 H23 YD8 sing 427 n n N14 H25 YD8 sing 428 n n N21 H27 YD8 sing 429 n n # _atom_sites.entry_id 7EHY _atom_sites.fract_transf_matrix[1][1] 0.031114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YD8 A 1 201 201 YD8 yd8 . C 3 HOH A 1 301 14 HOH HOH . C 3 HOH A 2 302 46 HOH HOH . C 3 HOH A 3 303 2 HOH HOH . C 3 HOH A 4 304 1 HOH HOH . C 3 HOH A 5 305 3 HOH HOH . C 3 HOH A 6 306 51 HOH HOH . C 3 HOH A 7 307 55 HOH HOH . C 3 HOH A 8 308 80 HOH HOH . C 3 HOH A 9 309 52 HOH HOH . C 3 HOH A 10 310 59 HOH HOH . C 3 HOH A 11 311 16 HOH HOH . C 3 HOH A 12 312 49 HOH HOH . C 3 HOH A 13 313 63 HOH HOH . C 3 HOH A 14 314 34 HOH HOH . C 3 HOH A 15 315 98 HOH HOH . C 3 HOH A 16 316 94 HOH HOH . C 3 HOH A 17 317 60 HOH HOH . C 3 HOH A 18 318 87 HOH HOH . C 3 HOH A 19 319 44 HOH HOH . C 3 HOH A 20 320 35 HOH HOH . C 3 HOH A 21 321 20 HOH HOH . C 3 HOH A 22 322 7 HOH HOH . C 3 HOH A 23 323 13 HOH HOH . C 3 HOH A 24 324 25 HOH HOH . C 3 HOH A 25 325 64 HOH HOH . C 3 HOH A 26 326 36 HOH HOH . C 3 HOH A 27 327 67 HOH HOH . C 3 HOH A 28 328 40 HOH HOH . C 3 HOH A 29 329 45 HOH HOH . C 3 HOH A 30 330 73 HOH HOH . C 3 HOH A 31 331 41 HOH HOH . C 3 HOH A 32 332 56 HOH HOH . C 3 HOH A 33 333 37 HOH HOH . C 3 HOH A 34 334 92 HOH HOH . C 3 HOH A 35 335 6 HOH HOH . C 3 HOH A 36 336 109 HOH HOH . C 3 HOH A 37 337 38 HOH HOH . C 3 HOH A 38 338 58 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 8 HOH HOH . C 3 HOH A 41 341 74 HOH HOH . C 3 HOH A 42 342 66 HOH HOH . C 3 HOH A 43 343 71 HOH HOH . C 3 HOH A 44 344 18 HOH HOH . C 3 HOH A 45 345 4 HOH HOH . C 3 HOH A 46 346 24 HOH HOH . C 3 HOH A 47 347 88 HOH HOH . C 3 HOH A 48 348 89 HOH HOH . C 3 HOH A 49 349 82 HOH HOH . C 3 HOH A 50 350 5 HOH HOH . C 3 HOH A 51 351 21 HOH HOH . C 3 HOH A 52 352 47 HOH HOH . C 3 HOH A 53 353 61 HOH HOH . C 3 HOH A 54 354 96 HOH HOH . C 3 HOH A 55 355 32 HOH HOH . C 3 HOH A 56 356 84 HOH HOH . C 3 HOH A 57 357 43 HOH HOH . C 3 HOH A 58 358 57 HOH HOH . C 3 HOH A 59 359 33 HOH HOH . C 3 HOH A 60 360 50 HOH HOH . C 3 HOH A 61 361 10 HOH HOH . C 3 HOH A 62 362 68 HOH HOH . C 3 HOH A 63 363 101 HOH HOH . C 3 HOH A 64 364 12 HOH HOH . C 3 HOH A 65 365 23 HOH HOH . C 3 HOH A 66 366 106 HOH HOH . C 3 HOH A 67 367 75 HOH HOH . C 3 HOH A 68 368 108 HOH HOH . C 3 HOH A 69 369 22 HOH HOH . C 3 HOH A 70 370 54 HOH HOH . C 3 HOH A 71 371 9 HOH HOH . C 3 HOH A 72 372 27 HOH HOH . C 3 HOH A 73 373 29 HOH HOH . C 3 HOH A 74 374 72 HOH HOH . C 3 HOH A 75 375 15 HOH HOH . C 3 HOH A 76 376 62 HOH HOH . C 3 HOH A 77 377 31 HOH HOH . C 3 HOH A 78 378 26 HOH HOH . C 3 HOH A 79 379 104 HOH HOH . C 3 HOH A 80 380 42 HOH HOH . C 3 HOH A 81 381 28 HOH HOH . C 3 HOH A 82 382 93 HOH HOH . C 3 HOH A 83 383 30 HOH HOH . C 3 HOH A 84 384 11 HOH HOH . C 3 HOH A 85 385 48 HOH HOH . C 3 HOH A 86 386 76 HOH HOH . C 3 HOH A 87 387 17 HOH HOH . C 3 HOH A 88 388 53 HOH HOH . C 3 HOH A 89 389 19 HOH HOH . C 3 HOH A 90 390 70 HOH HOH . C 3 HOH A 91 391 85 HOH HOH . C 3 HOH A 92 392 97 HOH HOH . C 3 HOH A 93 393 69 HOH HOH . C 3 HOH A 94 394 86 HOH HOH . C 3 HOH A 95 395 105 HOH HOH . C 3 HOH A 96 396 79 HOH HOH . C 3 HOH A 97 397 83 HOH HOH . C 3 HOH A 98 398 65 HOH HOH . C 3 HOH A 99 399 100 HOH HOH . C 3 HOH A 100 400 95 HOH HOH . C 3 HOH A 101 401 103 HOH HOH . C 3 HOH A 102 402 91 HOH HOH . C 3 HOH A 103 403 78 HOH HOH . C 3 HOH A 104 404 90 HOH HOH . C 3 HOH A 105 405 99 HOH HOH . C 3 HOH A 106 406 102 HOH HOH . C 3 HOH A 107 407 81 HOH HOH . C 3 HOH A 108 408 107 HOH HOH . C 3 HOH A 109 409 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YD8 . . . B 2 28.461 30.724 41.908 1 24.99 ? C1 YD8 201 A 1 HETATM 2 C C11 YD8 . . . B 2 32.424 30.205 43.071 1 36.81 ? C11 YD8 201 A 1 HETATM 3 C C12 YD8 . . . B 2 31.08 30.928 43.221 1 36.27 ? C12 YD8 201 A 1 HETATM 4 C C13 YD8 . . . B 2 34.734 30.897 42.914 1 35.1 ? C13 YD8 201 A 1 HETATM 5 C C15 YD8 . . . B 2 25.171 30.582 40.656 1 17.09 ? C15 YD8 201 A 1 HETATM 6 C C17 YD8 . . . B 2 23.79 30.025 40.673 1 22.57 ? C17 YD8 201 A 1 HETATM 7 C C18 YD8 . . . B 2 22.597 30.573 39.985 1 24.59 ? C18 YD8 201 A 1 HETATM 8 C C19 YD8 . . . B 2 21.599 29.534 40.405 1 20.18 ? C19 YD8 201 A 1 HETATM 9 C C2 YD8 . . . B 2 27.191 30.77 41.334 1 21.51 ? C2 YD8 201 A 1 HETATM 10 C C20 YD8 . . . B 2 22.278 28.56 41.295 1 16.56 ? C20 YD8 201 A 1 HETATM 11 C C22 YD8 . . . B 2 21.655 27.364 41.956 1 22.61 ? C22 YD8 201 A 1 HETATM 12 C C23 YD8 . . . B 2 20.138 29.465 40.15 1 17.36 ? C23 YD8 201 A 1 HETATM 13 C C24 YD8 . . . B 2 19.473 30.809 40.147 1 24.56 ? C24 YD8 201 A 1 HETATM 14 C C26 YD8 . . . B 2 22.519 31.806 39.102 1 22.03 ? C26 YD8 201 A 1 HETATM 15 C C3 YD8 . . . B 2 26.892 31.715 40.232 1 26.06 ? C3 YD8 201 A 1 HETATM 16 C C4 YD8 . . . B 2 27.914 32.537 39.811 1 24.55 ? C4 YD8 201 A 1 HETATM 17 C C5 YD8 . . . B 2 29.164 32.469 40.413 1 30.24 ? C5 YD8 201 A 1 HETATM 18 C C6 YD8 . . . B 2 29.452 31.581 41.442 1 24 ? C6 YD8 201 A 1 HETATM 19 C C8 YD8 . . . B 2 31.767 32.302 41.177 1 43.79 ? C8 YD8 201 A 1 HETATM 20 C C9 YD8 . . . B 2 33.044 32.308 42.004 1 42.39 ? C9 YD8 201 A 1 HETATM 21 N N10 YD8 . . . B 2 33.428 30.912 42.245 1 45.13 ? N10 YD8 201 A 1 HETATM 22 N N14 YD8 . . . B 2 25.609 31.559 39.856 1 25.49 ? N14 YD8 201 A 1 HETATM 23 N N16 YD8 . . . B 2 26.049 30.095 41.559 1 24.12 ? N16 YD8 201 A 1 HETATM 24 N N21 YD8 . . . B 2 23.573 28.908 41.381 1 19.21 ? N21 YD8 201 A 1 HETATM 25 N N7 YD8 . . . B 2 30.755 31.591 41.957 1 33.37 ? N7 YD8 201 A 1 HETATM 26 O O25 YD8 . . . B 2 19.499 28.439 40.069 1 21.24 ? O25 YD8 201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #