data_7EI0 # _model_server_result.job_id X3vkojD1IO9sTt6f3I9MnQ _model_server_result.datetime_utc '2025-01-22 20:10:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ei0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":302}' # _entry.id 7EI0 # _exptl.entry_id 7EI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EI0 _cell.length_a 115.55 _cell.length_b 115.55 _cell.length_c 240.891 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,O 1 1 B,L,M,N,P 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_454 x-1/2,-y+1/2,-z-1/4 1 0 0 0 -1 0 0 0 -1 -57.775 57.775 -60.22275 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 39 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 73 A CYS 73 1_555 A SG CYS 114 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 99 A CYS 99 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 229 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 B SG CYS 39 B CYS 39 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 73 B CYS 73 1_555 B SG CYS 114 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf7 B SG CYS 99 B CYS 99 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 41 A SER 41 1_555 A N YCM 42 A YCM 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C YCM 42 A YCM 42 1_555 A N TRP 43 A TRP 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C SER 41 B SER 41 1_555 B N YCM 42 B YCM 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C YCM 42 B YCM 42 1_555 B N TRP 43 B TRP 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? metalc ? metalc1 A O VAL 33 A VAL 33 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc2 B OD1 ASP 91 B ASP 91 1_555 N NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7EI0 _atom_sites.fract_transf_matrix[1][1] 0.008654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE A 1 301 1 PGE PGE . D 2 PGE A 1 302 2 PGE PGE . E 2 PGE A 1 303 4 PGE PGE . F 3 SO4 A 1 304 1 SO4 SO4 . G 3 SO4 A 1 305 2 SO4 SO4 . H 4 EDO A 1 306 1 EDO EDO . I 4 EDO A 1 307 2 EDO EDO . J 5 NA A 1 308 1 NA NA . K 6 CL A 1 309 1 CL CL . L 2 PGE B 1 301 3 PGE PGE . M 4 EDO B 1 302 3 EDO EDO . N 5 NA B 1 303 2 NA NA . O 7 HOH A 1 401 20 HOH HOH . O 7 HOH A 2 402 49 HOH HOH . O 7 HOH A 3 403 45 HOH HOH . O 7 HOH A 4 404 29 HOH HOH . O 7 HOH A 5 405 43 HOH HOH . O 7 HOH A 6 406 32 HOH HOH . O 7 HOH A 7 407 24 HOH HOH . O 7 HOH A 8 408 46 HOH HOH . O 7 HOH A 9 409 52 HOH HOH . O 7 HOH A 10 410 11 HOH HOH . O 7 HOH A 11 411 9 HOH HOH . O 7 HOH A 12 412 30 HOH HOH . O 7 HOH A 13 413 15 HOH HOH . O 7 HOH A 14 414 37 HOH HOH . O 7 HOH A 15 415 21 HOH HOH . O 7 HOH A 16 416 10 HOH HOH . O 7 HOH A 17 417 42 HOH HOH . O 7 HOH A 18 418 39 HOH HOH . O 7 HOH A 19 419 6 HOH HOH . O 7 HOH A 20 420 2 HOH HOH . O 7 HOH A 21 421 19 HOH HOH . O 7 HOH A 22 422 50 HOH HOH . O 7 HOH A 23 423 17 HOH HOH . O 7 HOH A 24 424 28 HOH HOH . O 7 HOH A 25 425 8 HOH HOH . O 7 HOH A 26 426 48 HOH HOH . O 7 HOH A 27 427 36 HOH HOH . O 7 HOH A 28 428 4 HOH HOH . O 7 HOH A 29 429 33 HOH HOH . O 7 HOH A 30 430 44 HOH HOH . O 7 HOH A 31 431 7 HOH HOH . O 7 HOH A 32 432 5 HOH HOH . O 7 HOH A 33 433 12 HOH HOH . O 7 HOH A 34 434 25 HOH HOH . O 7 HOH A 35 435 18 HOH HOH . O 7 HOH A 36 436 31 HOH HOH . O 7 HOH A 37 437 38 HOH HOH . O 7 HOH A 38 438 51 HOH HOH . O 7 HOH A 39 439 35 HOH HOH . O 7 HOH A 40 440 26 HOH HOH . O 7 HOH A 41 441 22 HOH HOH . O 7 HOH A 42 442 34 HOH HOH . O 7 HOH A 43 443 1 HOH HOH . O 7 HOH A 44 444 53 HOH HOH . O 7 HOH A 45 445 27 HOH HOH . P 7 HOH B 1 401 14 HOH HOH . P 7 HOH B 2 402 16 HOH HOH . P 7 HOH B 3 403 47 HOH HOH . P 7 HOH B 4 404 13 HOH HOH . P 7 HOH B 5 405 3 HOH HOH . P 7 HOH B 6 406 40 HOH HOH . P 7 HOH B 7 407 23 HOH HOH . P 7 HOH B 8 408 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 4 -8.103 20.119 -20.637 1 130.58 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . M 4 -7.768 21.389 -20.055 1 131.38 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . M 4 -7.196 19.783 -21.822 1 130.85 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . M 4 -5.99 19.097 -21.451 1 133.75 ? O2 EDO 302 B 1 HETATM 5 H H11 EDO . . . M 4 -8.01 19.339 -19.879 1 1.06 ? H11 EDO 302 B 1 HETATM 6 H H12 EDO . . . M 4 -9.141 20.14 -20.973 1 1.06 ? H12 EDO 302 B 1 HETATM 7 H HO1 EDO . . . M 4 -8.298 21.528 -19.258 1 1.06 ? HO1 EDO 302 B 1 HETATM 8 H H21 EDO . . . M 4 -7.753 19.159 -22.524 1 1.06 ? H21 EDO 302 B 1 HETATM 9 H H22 EDO . . . M 4 -6.929 20.709 -22.334 1 1.06 ? H22 EDO 302 B 1 HETATM 10 H HO2 EDO . . . M 4 -5.412 19.021 -22.223 1 1.06 ? HO2 EDO 302 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #