data_7EIW
#
_model_server_result.job_id            jJ96Dzd_unXHxnD4Pn3D6g 
_model_server_result.datetime_utc      '2025-01-18 18:29:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7eiw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    7EIW 
#
_exptl.entry_id    7EIW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.297 
_cell.angle_gamma         90 
_cell.entry_id            7EIW 
_cell.length_a            69.902 
_cell.length_b            57.654 
_cell.length_c            117.647 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7EIW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 258 A ASP 254 1_555 A N CSX 259 A CSX 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CSX 259 A CSX 255 1_555 A N LEU 260 A LEU 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 A NZ LYS 309 A LYS 305 1_555 C C4A PLP . A PLP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale4 B C ASP 258 B ASP 254 1_555 B N CSX 259 B CSX 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale5 B C CSX 259 B CSX 255 1_555 B N LEU 260 B LEU 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B NZ LYS 309 B LYS 305 1_555 D C4A PLP . B PLP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 274 n y 
N1 C6 PLP sing 275 n y 
C2 C2A PLP sing 276 n n 
C2 C3 PLP sing 277 n y 
C2A H2A1 PLP sing 278 n n 
C2A H2A2 PLP sing 279 n n 
C2A H2A3 PLP sing 280 n n 
C3 O3 PLP sing 281 n n 
C3 C4 PLP doub 282 n y 
O3 HO3 PLP sing 283 n n 
C4 C4A PLP sing 284 n n 
C4 C5 PLP sing 285 n y 
C4A O4A PLP doub 286 n n 
C4A H4A PLP sing 287 n n 
C5 C6 PLP doub 288 n y 
C5 C5A PLP sing 289 n n 
C6 H6 PLP sing 290 n n 
C5A O4P PLP sing 291 n n 
C5A H5A1 PLP sing 292 n n 
C5A H5A2 PLP sing 293 n n 
O4P P PLP sing 294 n n 
P O1P PLP doub 295 n n 
P O2P PLP sing 296 n n 
P O3P PLP sing 297 n n 
O2P HOP2 PLP sing 298 n n 
O3P HOP3 PLP sing 299 n n 
#
_atom_sites.entry_id                     7EIW 
_atom_sites.fract_transf_matrix[1][1]    0.014306 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004182 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008856 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 1000 1000 PLP PLP . 
D 2 PLP B 1 1000 1000 PLP PLP . 
E 3 HOH A 1 1101 95 HOH HOH . 
E 3 HOH A 2 1102 22 HOH HOH . 
E 3 HOH A 3 1103 68 HOH HOH . 
E 3 HOH A 4 1104 132 HOH HOH . 
E 3 HOH A 5 1105 124 HOH HOH . 
E 3 HOH A 6 1106 146 HOH HOH . 
E 3 HOH A 7 1107 75 HOH HOH . 
E 3 HOH A 8 1108 52 HOH HOH . 
E 3 HOH A 9 1109 96 HOH HOH . 
E 3 HOH A 10 1110 101 HOH HOH . 
E 3 HOH A 11 1111 136 HOH HOH . 
E 3 HOH A 12 1112 3 HOH HOH . 
E 3 HOH A 13 1113 102 HOH HOH . 
E 3 HOH A 14 1114 92 HOH HOH . 
E 3 HOH A 15 1115 38 HOH HOH . 
E 3 HOH A 16 1116 112 HOH HOH . 
E 3 HOH A 17 1117 115 HOH HOH . 
E 3 HOH A 18 1118 27 HOH HOH . 
E 3 HOH A 19 1119 74 HOH HOH . 
E 3 HOH A 20 1120 137 HOH HOH . 
E 3 HOH A 21 1121 139 HOH HOH . 
E 3 HOH A 22 1122 105 HOH HOH . 
E 3 HOH A 23 1123 63 HOH HOH . 
E 3 HOH A 24 1124 150 HOH HOH . 
E 3 HOH A 25 1125 21 HOH HOH . 
E 3 HOH A 26 1126 26 HOH HOH . 
E 3 HOH A 27 1127 79 HOH HOH . 
E 3 HOH A 28 1128 39 HOH HOH . 
E 3 HOH A 29 1129 65 HOH HOH . 
E 3 HOH A 30 1130 94 HOH HOH . 
E 3 HOH A 31 1131 19 HOH HOH . 
E 3 HOH A 32 1132 60 HOH HOH . 
E 3 HOH A 33 1133 111 HOH HOH . 
E 3 HOH A 34 1134 77 HOH HOH . 
E 3 HOH A 35 1135 67 HOH HOH . 
E 3 HOH A 36 1136 50 HOH HOH . 
E 3 HOH A 37 1137 89 HOH HOH . 
E 3 HOH A 38 1138 4 HOH HOH . 
E 3 HOH A 39 1139 66 HOH HOH . 
E 3 HOH A 40 1140 69 HOH HOH . 
E 3 HOH A 41 1141 86 HOH HOH . 
E 3 HOH A 42 1142 33 HOH HOH . 
E 3 HOH A 43 1143 70 HOH HOH . 
E 3 HOH A 44 1144 45 HOH HOH . 
E 3 HOH A 45 1145 151 HOH HOH . 
E 3 HOH A 46 1146 87 HOH HOH . 
E 3 HOH A 47 1147 138 HOH HOH . 
E 3 HOH A 48 1148 47 HOH HOH . 
E 3 HOH A 49 1149 100 HOH HOH . 
E 3 HOH A 50 1150 147 HOH HOH . 
E 3 HOH A 51 1151 120 HOH HOH . 
E 3 HOH A 52 1152 135 HOH HOH . 
E 3 HOH A 53 1153 142 HOH HOH . 
E 3 HOH A 54 1154 76 HOH HOH . 
E 3 HOH A 55 1155 119 HOH HOH . 
E 3 HOH A 56 1156 107 HOH HOH . 
E 3 HOH A 57 1157 37 HOH HOH . 
E 3 HOH A 58 1158 88 HOH HOH . 
E 3 HOH A 59 1159 133 HOH HOH . 
F 3 HOH B 1 1101 134 HOH HOH . 
F 3 HOH B 2 1102 78 HOH HOH . 
F 3 HOH B 3 1103 53 HOH HOH . 
F 3 HOH B 4 1104 55 HOH HOH . 
F 3 HOH B 5 1105 42 HOH HOH . 
F 3 HOH B 6 1106 84 HOH HOH . 
F 3 HOH B 7 1107 13 HOH HOH . 
F 3 HOH B 8 1108 17 HOH HOH . 
F 3 HOH B 9 1109 14 HOH HOH . 
F 3 HOH B 10 1110 18 HOH HOH . 
F 3 HOH B 11 1111 126 HOH HOH . 
F 3 HOH B 12 1112 72 HOH HOH . 
F 3 HOH B 13 1113 31 HOH HOH . 
F 3 HOH B 14 1114 130 HOH HOH . 
F 3 HOH B 15 1115 36 HOH HOH . 
F 3 HOH B 16 1116 10 HOH HOH . 
F 3 HOH B 17 1117 41 HOH HOH . 
F 3 HOH B 18 1118 117 HOH HOH . 
F 3 HOH B 19 1119 32 HOH HOH . 
F 3 HOH B 20 1120 28 HOH HOH . 
F 3 HOH B 21 1121 54 HOH HOH . 
F 3 HOH B 22 1122 62 HOH HOH . 
F 3 HOH B 23 1123 82 HOH HOH . 
F 3 HOH B 24 1124 125 HOH HOH . 
F 3 HOH B 25 1125 40 HOH HOH . 
F 3 HOH B 26 1126 123 HOH HOH . 
F 3 HOH B 27 1127 113 HOH HOH . 
F 3 HOH B 28 1128 61 HOH HOH . 
F 3 HOH B 29 1129 16 HOH HOH . 
F 3 HOH B 30 1130 56 HOH HOH . 
F 3 HOH B 31 1131 30 HOH HOH . 
F 3 HOH B 32 1132 20 HOH HOH . 
F 3 HOH B 33 1133 1 HOH HOH . 
F 3 HOH B 34 1134 12 HOH HOH . 
F 3 HOH B 35 1135 23 HOH HOH . 
F 3 HOH B 36 1136 149 HOH HOH . 
F 3 HOH B 37 1137 109 HOH HOH . 
F 3 HOH B 38 1138 83 HOH HOH . 
F 3 HOH B 39 1139 51 HOH HOH . 
F 3 HOH B 40 1140 93 HOH HOH . 
F 3 HOH B 41 1141 90 HOH HOH . 
F 3 HOH B 42 1142 121 HOH HOH . 
F 3 HOH B 43 1143 71 HOH HOH . 
F 3 HOH B 44 1144 58 HOH HOH . 
F 3 HOH B 45 1145 11 HOH HOH . 
F 3 HOH B 46 1146 25 HOH HOH . 
F 3 HOH B 47 1147 43 HOH HOH . 
F 3 HOH B 48 1148 97 HOH HOH . 
F 3 HOH B 49 1149 81 HOH HOH . 
F 3 HOH B 50 1150 48 HOH HOH . 
F 3 HOH B 51 1151 34 HOH HOH . 
F 3 HOH B 52 1152 141 HOH HOH . 
F 3 HOH B 53 1153 57 HOH HOH . 
F 3 HOH B 54 1154 5 HOH HOH . 
F 3 HOH B 55 1155 143 HOH HOH . 
F 3 HOH B 56 1156 29 HOH HOH . 
F 3 HOH B 57 1157 131 HOH HOH . 
F 3 HOH B 58 1158 15 HOH HOH . 
F 3 HOH B 59 1159 144 HOH HOH . 
F 3 HOH B 60 1160 116 HOH HOH . 
F 3 HOH B 61 1161 49 HOH HOH . 
F 3 HOH B 62 1162 59 HOH HOH . 
F 3 HOH B 63 1163 64 HOH HOH . 
F 3 HOH B 64 1164 106 HOH HOH . 
F 3 HOH B 65 1165 104 HOH HOH . 
F 3 HOH B 66 1166 140 HOH HOH . 
F 3 HOH B 67 1167 148 HOH HOH . 
F 3 HOH B 68 1168 103 HOH HOH . 
F 3 HOH B 69 1169 108 HOH HOH . 
F 3 HOH B 70 1170 73 HOH HOH . 
F 3 HOH B 71 1171 2 HOH HOH . 
F 3 HOH B 72 1172 110 HOH HOH . 
F 3 HOH B 73 1173 122 HOH HOH . 
F 3 HOH B 74 1174 6 HOH HOH . 
F 3 HOH B 75 1175 46 HOH HOH . 
F 3 HOH B 76 1176 80 HOH HOH . 
F 3 HOH B 77 1177 118 HOH HOH . 
F 3 HOH B 78 1178 127 HOH HOH . 
F 3 HOH B 79 1179 85 HOH HOH . 
F 3 HOH B 80 1180 35 HOH HOH . 
F 3 HOH B 81 1181 129 HOH HOH . 
F 3 HOH B 82 1182 128 HOH HOH . 
F 3 HOH B 83 1183 44 HOH HOH . 
F 3 HOH B 84 1184 7 HOH HOH . 
F 3 HOH B 85 1185 8 HOH HOH . 
F 3 HOH B 86 1186 91 HOH HOH . 
F 3 HOH B 87 1187 145 HOH HOH . 
F 3 HOH B 88 1188 99 HOH HOH . 
F 3 HOH B 89 1189 114 HOH HOH . 
F 3 HOH B 90 1190 24 HOH HOH . 
F 3 HOH B 91 1191 9 HOH HOH . 
F 3 HOH B 92 1192 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 -26.003 -3.445 -25.072 1 50.36 0 N1 PLP 1000 A 1 
HETATM 2 C C2 PLP . . . C 2 -26.412 -3.315 -23.812 1 55.06 0 C2 PLP 1000 A 1 
HETATM 3 C C2A PLP . . . C 2 -27.867 -3.081 -23.551 1 53.33 0 C2A PLP 1000 A 1 
HETATM 4 C C3 PLP . . . C 2 -25.486 -3.401 -22.752 1 54.71 0 C3 PLP 1000 A 1 
HETATM 5 O O3 PLP . . . C 2 -25.946 -3.263 -21.493 1 55.64 0 O3 PLP 1000 A 1 
HETATM 6 C C4 PLP . . . C 2 -24.12 -3.625 -23.022 1 52.8 0 C4 PLP 1000 A 1 
HETATM 7 C C4A PLP . . . C 2 -23.141 -3.764 -21.904 1 51.98 0 C4A PLP 1000 A 1 
HETATM 8 C C5 PLP . . . C 2 -23.734 -3.777 -24.37 1 53.18 0 C5 PLP 1000 A 1 
HETATM 9 C C6 PLP . . . C 2 -24.703 -3.662 -25.333 1 52.47 0 C6 PLP 1000 A 1 
HETATM 10 C C5A PLP . . . C 2 -22.32 -3.964 -24.856 1 53.17 0 C5A PLP 1000 A 1 
HETATM 11 O O4P PLP . . . C 2 -21.369 -4.633 -23.974 1 51.15 0 O4P PLP 1000 A 1 
HETATM 12 P P PLP . . . C 2 -20.025 -5.153 -24.68 1 44.83 0 P PLP 1000 A 1 
HETATM 13 O O1P PLP . . . C 2 -20.045 -4.567 -26.067 1 45.85 0 O1P PLP 1000 A 1 
HETATM 14 O O2P PLP . . . C 2 -20.106 -6.666 -24.643 1 43.76 0 O2P PLP 1000 A 1 
HETATM 15 O O3P PLP . . . C 2 -18.897 -4.605 -23.876 1 45.34 0 O3P PLP 1000 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           596 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           15 
#