data_7EJ9 # _model_server_result.job_id GFym1G1EgN8yC09jNS1oVQ _model_server_result.datetime_utc '2024-11-17 00:33:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ej9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7EJ9 # _exptl.entry_id 7EJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.983 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-chlorophenyl)-N-[2-(4-methoxyphenyl)-5,5-bis(oxidanylidene)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]cyclopentane-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7EJ9 _cell.length_a 89.486 _cell.length_b 93.815 _cell.length_c 128.535 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 383 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 381 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 432 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 430 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H24 Cl N3 O4 S' _chem_comp.formula_weight 485.983 _chem_comp.id DYX _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-chlorophenyl)-N-[2-(4-methoxyphenyl)-5,5-bis(oxidanylidene)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]cyclopentane-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 S18 DYX doub 83 n n O20 S18 DYX doub 84 n n S18 C19 DYX sing 85 n n S18 C17 DYX sing 86 n n C19 C05 DYX sing 87 n n C17 C06 DYX sing 88 n n C05 C06 DYX sing 89 n y C05 C04 DYX doub 90 n y C26 C25 DYX sing 91 n n C26 C22 DYX sing 92 n n C06 N07 DYX doub 93 n y C04 N03 DYX sing 94 n n C04 N08 DYX sing 95 n y N07 N08 DYX sing 96 n y C25 C24 DYX sing 97 n n N03 C01 DYX sing 98 n n C10 C11 DYX doub 99 n y C10 C09 DYX sing 100 n y N08 C09 DYX sing 101 n n C01 O02 DYX doub 102 n n C01 C22 DYX sing 103 n n C11 C12 DYX sing 104 n y C09 C14 DYX doub 105 n y C22 C23 DYX sing 106 n n C22 C27 DYX sing 107 n n C24 C23 DYX sing 108 n n C32 C27 DYX doub 109 n y C32 C31 DYX sing 110 n y C12 O15 DYX sing 111 n n C12 C13 DYX doub 112 n y C14 C13 DYX sing 113 n y C27 C28 DYX sing 114 n y O15 C16 DYX sing 115 n n C31 C30 DYX doub 116 n y C28 C29 DYX doub 117 n y C30 C29 DYX sing 118 n y C30 CL1 DYX sing 119 n n C10 H1 DYX sing 120 n n C13 H2 DYX sing 121 n n C17 H3 DYX sing 122 n n C17 H4 DYX sing 123 n n C24 H5 DYX sing 124 n n C24 H6 DYX sing 125 n n C26 H7 DYX sing 126 n n C26 H8 DYX sing 127 n n C28 H9 DYX sing 128 n n C11 H10 DYX sing 129 n n C14 H11 DYX sing 130 n n C16 H12 DYX sing 131 n n C16 H13 DYX sing 132 n n C16 H14 DYX sing 133 n n C19 H15 DYX sing 134 n n C19 H16 DYX sing 135 n n C23 H17 DYX sing 136 n n C23 H18 DYX sing 137 n n C25 H19 DYX sing 138 n n C25 H20 DYX sing 139 n n C29 H21 DYX sing 140 n n C31 H22 DYX sing 141 n n C32 H23 DYX sing 142 n n N03 H24 DYX sing 143 n n # _atom_sites.entry_id 7EJ9 _atom_sites.fract_transf_matrix[1][1] 0.011175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DYX A 1 601 601 DYX LIG . D 2 DYX B 1 601 601 DYX LIG . E 3 HOH A 1 701 110 HOH HOH . E 3 HOH A 2 702 125 HOH HOH . E 3 HOH A 3 703 65 HOH HOH . E 3 HOH A 4 704 84 HOH HOH . E 3 HOH A 5 705 24 HOH HOH . E 3 HOH A 6 706 28 HOH HOH . E 3 HOH A 7 707 121 HOH HOH . E 3 HOH A 8 708 56 HOH HOH . E 3 HOH A 9 709 74 HOH HOH . E 3 HOH A 10 710 136 HOH HOH . E 3 HOH A 11 711 51 HOH HOH . E 3 HOH A 12 712 23 HOH HOH . E 3 HOH A 13 713 82 HOH HOH . E 3 HOH A 14 714 76 HOH HOH . E 3 HOH A 15 715 58 HOH HOH . E 3 HOH A 16 716 30 HOH HOH . E 3 HOH A 17 717 68 HOH HOH . E 3 HOH A 18 718 29 HOH HOH . E 3 HOH A 19 719 97 HOH HOH . E 3 HOH A 20 720 79 HOH HOH . E 3 HOH A 21 721 13 HOH HOH . E 3 HOH A 22 722 62 HOH HOH . E 3 HOH A 23 723 75 HOH HOH . E 3 HOH A 24 724 61 HOH HOH . E 3 HOH A 25 725 81 HOH HOH . E 3 HOH A 26 726 34 HOH HOH . E 3 HOH A 27 727 109 HOH HOH . E 3 HOH A 28 728 96 HOH HOH . E 3 HOH A 29 729 46 HOH HOH . E 3 HOH A 30 730 80 HOH HOH . E 3 HOH A 31 731 36 HOH HOH . E 3 HOH A 32 732 22 HOH HOH . E 3 HOH A 33 733 101 HOH HOH . E 3 HOH A 34 734 6 HOH HOH . E 3 HOH A 35 735 122 HOH HOH . E 3 HOH A 36 736 119 HOH HOH . E 3 HOH A 37 737 44 HOH HOH . E 3 HOH A 38 738 100 HOH HOH . E 3 HOH A 39 739 2 HOH HOH . E 3 HOH A 40 740 108 HOH HOH . E 3 HOH A 41 741 15 HOH HOH . E 3 HOH A 42 742 21 HOH HOH . E 3 HOH A 43 743 32 HOH HOH . E 3 HOH A 44 744 124 HOH HOH . E 3 HOH A 45 745 106 HOH HOH . E 3 HOH A 46 746 18 HOH HOH . E 3 HOH A 47 747 123 HOH HOH . E 3 HOH A 48 748 78 HOH HOH . E 3 HOH A 49 749 35 HOH HOH . E 3 HOH A 50 750 27 HOH HOH . E 3 HOH A 51 751 1 HOH HOH . E 3 HOH A 52 752 105 HOH HOH . E 3 HOH A 53 753 37 HOH HOH . E 3 HOH A 54 754 94 HOH HOH . E 3 HOH A 55 755 104 HOH HOH . E 3 HOH A 56 756 10 HOH HOH . E 3 HOH A 57 757 102 HOH HOH . E 3 HOH A 58 758 17 HOH HOH . E 3 HOH A 59 759 98 HOH HOH . E 3 HOH A 60 760 52 HOH HOH . E 3 HOH A 61 761 92 HOH HOH . E 3 HOH A 62 762 93 HOH HOH . E 3 HOH A 63 763 40 HOH HOH . E 3 HOH A 64 764 85 HOH HOH . E 3 HOH A 65 765 59 HOH HOH . E 3 HOH A 66 766 73 HOH HOH . E 3 HOH A 67 767 72 HOH HOH . E 3 HOH A 68 768 60 HOH HOH . E 3 HOH A 69 769 67 HOH HOH . E 3 HOH A 70 770 107 HOH HOH . E 3 HOH A 71 771 95 HOH HOH . E 3 HOH A 72 772 120 HOH HOH . E 3 HOH A 73 773 45 HOH HOH . E 3 HOH A 74 774 42 HOH HOH . E 3 HOH A 75 775 43 HOH HOH . E 3 HOH A 76 776 57 HOH HOH . E 3 HOH A 77 777 66 HOH HOH . F 3 HOH B 1 701 127 HOH HOH . F 3 HOH B 2 702 134 HOH HOH . F 3 HOH B 3 703 116 HOH HOH . F 3 HOH B 4 704 117 HOH HOH . F 3 HOH B 5 705 139 HOH HOH . F 3 HOH B 6 706 39 HOH HOH . F 3 HOH B 7 707 87 HOH HOH . F 3 HOH B 8 708 126 HOH HOH . F 3 HOH B 9 709 3 HOH HOH . F 3 HOH B 10 710 111 HOH HOH . F 3 HOH B 11 711 69 HOH HOH . F 3 HOH B 12 712 55 HOH HOH . F 3 HOH B 13 713 89 HOH HOH . F 3 HOH B 14 714 137 HOH HOH . F 3 HOH B 15 715 112 HOH HOH . F 3 HOH B 16 716 114 HOH HOH . F 3 HOH B 17 717 71 HOH HOH . F 3 HOH B 18 718 19 HOH HOH . F 3 HOH B 19 719 135 HOH HOH . F 3 HOH B 20 720 133 HOH HOH . F 3 HOH B 21 721 16 HOH HOH . F 3 HOH B 22 722 128 HOH HOH . F 3 HOH B 23 723 9 HOH HOH . F 3 HOH B 24 724 63 HOH HOH . F 3 HOH B 25 725 131 HOH HOH . F 3 HOH B 26 726 4 HOH HOH . F 3 HOH B 27 727 49 HOH HOH . F 3 HOH B 28 728 26 HOH HOH . F 3 HOH B 29 729 7 HOH HOH . F 3 HOH B 30 730 91 HOH HOH . F 3 HOH B 31 731 88 HOH HOH . F 3 HOH B 32 732 86 HOH HOH . F 3 HOH B 33 733 132 HOH HOH . F 3 HOH B 34 734 31 HOH HOH . F 3 HOH B 35 735 48 HOH HOH . F 3 HOH B 36 736 8 HOH HOH . F 3 HOH B 37 737 50 HOH HOH . F 3 HOH B 38 738 115 HOH HOH . F 3 HOH B 39 739 130 HOH HOH . F 3 HOH B 40 740 20 HOH HOH . F 3 HOH B 41 741 113 HOH HOH . F 3 HOH B 42 742 5 HOH HOH . F 3 HOH B 43 743 54 HOH HOH . F 3 HOH B 44 744 90 HOH HOH . F 3 HOH B 45 745 138 HOH HOH . F 3 HOH B 46 746 70 HOH HOH . F 3 HOH B 47 747 118 HOH HOH . F 3 HOH B 48 748 11 HOH HOH . F 3 HOH B 49 749 129 HOH HOH . F 3 HOH B 50 750 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DYX . . . D 2 -42.327 -8.269 -44.192 0.95 33.52 ? C10 DYX 601 B 1 HETATM 2 C C13 DYX . . . D 2 -42.281 -7.338 -46.822 0.95 35.64 ? C13 DYX 601 B 1 HETATM 3 C C17 DYX . . . D 2 -39.964 -5.172 -40.127 0.95 34.34 ? C17 DYX 601 B 1 HETATM 4 C C22 DYX . . . D 2 -43.946 -2.193 -45.388 0.95 38.39 ? C22 DYX 601 B 1 HETATM 5 C C24 DYX . . . D 2 -45.085 -0.258 -46.247 0.95 44.66 ? C24 DYX 601 B 1 HETATM 6 C C26 DYX . . . D 2 -45.51 -2.198 -44.997 0.95 41.03 ? C26 DYX 601 B 1 HETATM 7 C C28 DYX . . . D 2 -42.407 -3.132 -47.217 0.95 37.28 ? C28 DYX 601 B 1 HETATM 8 C C01 DYX . . . D 2 -43.008 -2.709 -44.27 0.95 39.38 ? C01 DYX 601 B 1 HETATM 9 C C04 DYX . . . D 2 -42.02 -4.884 -43.149 0.95 36.94 ? C04 DYX 601 B 1 HETATM 10 C C05 DYX . . . D 2 -41.442 -4.416 -41.929 0.95 36.88 ? C05 DYX 601 B 1 HETATM 11 C C06 DYX . . . D 2 -40.685 -5.408 -41.44 0.95 33.96 ? C06 DYX 601 B 1 HETATM 12 C C09 DYX . . . D 2 -41.943 -6.953 -44.467 0.95 35.13 ? C09 DYX 601 B 1 HETATM 13 C C11 DYX . . . D 2 -42.683 -9.125 -45.232 0.95 34.73 ? C11 DYX 601 B 1 HETATM 14 C C12 DYX . . . D 2 -42.66 -8.657 -46.545 0.95 36.14 ? C12 DYX 601 B 1 HETATM 15 C C14 DYX . . . D 2 -41.922 -6.482 -45.782 0.95 34.81 ? C14 DYX 601 B 1 HETATM 16 C C16 DYX . . . D 2 -43.614 -8.883 -48.695 0.95 39.41 ? C16 DYX 601 B 1 HETATM 17 C C19 DYX . . . D 2 -41.478 -3.147 -41.09 0.95 36.19 ? C19 DYX 601 B 1 HETATM 18 C C23 DYX . . . D 2 -43.652 -0.941 -45.708 0.95 38.91 ? C23 DYX 601 B 1 HETATM 19 C C25 DYX . . . D 2 -46.107 -1.121 -45.972 0.95 44.45 ? C25 DYX 601 B 1 HETATM 20 C C27 DYX . . . D 2 -43.676 -3.125 -46.635 0.95 38.3 ? C27 DYX 601 B 1 HETATM 21 C C29 DYX . . . D 2 -42.155 -3.952 -48.318 0.95 37.22 ? C29 DYX 601 B 1 HETATM 22 C C30 DYX . . . D 2 -43.172 -4.762 -48.825 0.95 39.87 ? C30 DYX 601 B 1 HETATM 23 C C31 DYX . . . D 2 -44.437 -4.761 -48.238 0.95 39.93 ? C31 DYX 601 B 1 HETATM 24 C C32 DYX . . . D 2 -44.687 -3.944 -47.137 0.95 40.84 ? C32 DYX 601 B 1 HETATM 25 N N03 DYX . . . D 2 -42.906 -4.176 -44.108 0.95 37.16 ? N03 DYX 601 B 1 HETATM 26 N N07 DYX . . . D 2 -40.786 -6.47 -42.322 0.95 35.32 ? N07 DYX 601 B 1 HETATM 27 N N08 DYX . . . D 2 -41.582 -6.085 -43.332 0.95 36.7 ? N08 DYX 601 B 1 HETATM 28 O O02 DYX . . . D 2 -42.404 -1.924 -43.615 0.95 39.42 ? O02 DYX 601 B 1 HETATM 29 O O15 DYX . . . D 2 -43.022 -9.522 -47.592 0.95 37.81 ? O15 DYX 601 B 1 HETATM 30 O O20 DYX . . . D 2 -40.003 -3.394 -38.327 0.95 37.49 ? O20 DYX 601 B 1 HETATM 31 O O21 DYX . . . D 2 -42.181 -3.483 -38.799 0.95 38.12 ? O21 DYX 601 B 1 HETATM 32 S S18 DYX . . . D 2 -40.9 -3.745 -39.433 0.95 34.78 ? S18 DYX 601 B 1 HETATM 33 CL CL1 DYX . . . D 2 -42.858 -5.816 -50.231 0.95 47.16 ? CL1 DYX 601 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #